mRNA_C-tenellus_contig1028.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig1028.1.1
Unique NamemRNA_C-tenellus_contig1028.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig1028.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig1028contigC-tenellus_contig1028:2..4337 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2012
Hectar predicted targeting categoryother localisation
Exons5
Cds size1236
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig1028.1.1prot_C-tenellus_contig1028.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig1028 62..3621 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789124.1708653-UTR-C-tenellus_contig1028:1..611680789124.1708653-UTR-C-tenellus_contig1028:1..61Choristocarpus tenellus KU2346UTRC-tenellus_contig1028 2..61 +
1680789124.2298465-UTR-C-tenellus_contig1028:3621..43371680789124.2298465-UTR-C-tenellus_contig1028:3621..4337Choristocarpus tenellus KU2346UTRC-tenellus_contig1028 3622..4337 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789124.1815915-CDS-C-tenellus_contig1028:61..5911680789124.1815915-CDS-C-tenellus_contig1028:61..591Choristocarpus tenellus KU2346CDSC-tenellus_contig1028 62..591 +
1680789124.1906023-CDS-C-tenellus_contig1028:937..11591680789124.1906023-CDS-C-tenellus_contig1028:937..1159Choristocarpus tenellus KU2346CDSC-tenellus_contig1028 938..1159 +
1680789124.2010794-CDS-C-tenellus_contig1028:1951..21281680789124.2010794-CDS-C-tenellus_contig1028:1951..2128Choristocarpus tenellus KU2346CDSC-tenellus_contig1028 1952..2128 +
1680789124.2128744-CDS-C-tenellus_contig1028:2346..25151680789124.2128744-CDS-C-tenellus_contig1028:2346..2515Choristocarpus tenellus KU2346CDSC-tenellus_contig1028 2347..2515 +
1680789124.2208548-CDS-C-tenellus_contig1028:3483..36211680789124.2208548-CDS-C-tenellus_contig1028:3483..3621Choristocarpus tenellus KU2346CDSC-tenellus_contig1028 3484..3621 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig1028.1.1

>prot_C-tenellus_contig1028.1.1 ID=prot_C-tenellus_contig1028.1.1|Name=mRNA_C-tenellus_contig1028.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=412bp
MLEGEVHACEEMKRQQGQKALRTWKRWHQQQEALRKRADNFYLRQWPLKA
WRASVRERVKARTCEVLLTARGIARWRDLGLRAGILGLEREAWEAGLIGL
VQRRCGFRSWRRYAKGRVDRYQMLETATLQELQWMARRGLGGLRGKVWRQ
RKGCRVLEQGERYQYRNTKIQVIERLRGLLRARRRKFVRADTFHRRVTAK
NLLSRWSRAARIRVQMRQLWRLAVSVERRRARYLGITALAEVAAREVASQ
RLCVYVGQHWEHFMAARAFTSWRRFCLHRADAEKLSKSAEVLRGRSMLSS
GFRGLLEACRLHQRQQFTEEAAVLHCSNVVGKTSLRRWRVVVAFRHDRQT
KTRAATLHWARTLLRKVMFEWETGAVEQWAVRQQTEAAEHHWSCSEKRKV
LEVWTRARNMF*
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mRNA from alignment at C-tenellus_contig1028:2..4337+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig1028.1.1 ID=mRNA_C-tenellus_contig1028.1.1|Name=mRNA_C-tenellus_contig1028.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=4336bp|location=Sequence derived from alignment at C-tenellus_contig1028:2..4337+ (Choristocarpus tenellus KU2346)
CTTTTGGCAGGGGGGCAGGGGCTGGCAGTCTGGCGAGCAAGGTCTGCAGC
AGTGGCAGCAATGCTGGAGGGTGAGGTACATGCATGCGAGGAAATGAAGC
GGCAGCAGGGTCAAAAAGCCCTACGGACATGGAAACGGTGGCACCAACAA
CAGGAAGCATTGCGAAAGCGGGCGGACAACTTCTATCTCAGGCAGTGGCC
ACTGAAGGCCTGGAGGGCTTCAGTGAGGGAAAGAGTGAAGGCACGAACCT
GTGAGGTGTTATTGACTGCACGAGGCATTGCCCGGTGGCGCGATCTGGGG
CTAAGGGCTGGAATTTTGGGCTTGGAGCGTGAGGCATGGGAAGCTGGATT
GATTGGATTAGTTCAGCGGCGGTGTGGATTTCGTTCATGGCGGCGTTATG
CAAAGGGAAGGGTGGACCGGTATCAGATGTTGGAGACTGCAACTTTGCAG
GAGTTGCAGTGGATGGCAAGGAGGGGTCTCGGTGGCCTGAGGGGGAAGGT
ATGGAGGCAGAGGAAAGGGTGCAGGGTGCTGGAACAGGGTGAGAGGTACC
AATATCGGAATACAAAGATACAAGTCATTGAAAGATTGAGGTAAGCATAA
TTAGGTGGGTAGGATTCAAGTTGGAACTTTCAGCCATTTTTGCATTGTGA
TTTGTTTTGCCAGCATGAAACTTTGCTAATTGGAAAGCCCTAAGGTTAAT
CTTTTTGATGACTCAAATATGTACATTATTCAATAGAGTACATGTTGTAG
TACTATGGCACTATACATGTGACCACTTGCATGATGTGATACATTTGGTA
GCGGGCAACAGGTTACTGCACCACCACCTGTACCCCACCCCGCAAATTCA
ACTCCTAACCCAATCCTTTTAAAACCTCTGTCCTCCACCCCTGAAACTTG
CCACTCTTTGCCACACTTGCACTCTGCACCATAAAGGGGTCTCCTAAGGG
CCAGGAGGCGTAAGTTTGTCCGAGCAGATACCTTCCACCGGCGTGTCACT
GCCAAGAACCTCCTCTCCCGCTGGTCAAGGGCAGCACGAATTCGGGTGCA
GATGCGACAACTTTGGAGACTAGCAGTGAGTGTGGAGCGAAGACGTGCAA
GGTACCTGGGTATCACAGCCTTGGCGGAGGTGGCTGCTCGAGAGGTTGCC
TCTCAAAGGTAACTCTATCTCCAATGATGCAGTGCTCCTAGGTCTGTGTG
TGTGTGCATAGAGCAGGGTGGAGAAAGAGATGGGAGGGCAACTCATTGAT
GCCTTGCTCCAGACTCTTGAACCAGTAGCTTAAGCACTATCAGAGTATAG
ATAGATCCACAATTATGCTTTCACGAGTTATATATAGACATATCATAGGA
GGAAGGAGGAGTTGTGCCAGGGGTGTGGGGGAGTAGAGGTGTGAGGCATT
TCTCCTTATTGTTCACTGGACAAGGTAAACCCATTTTGTTGGAGGGGATA
TCTTTTCTGCCTCTTAGTGCTAGAGCTGGCAATACTAGCACCTTTACCTG
CTACAATAAAATCCTGCTGGACTTTGGTATTGTCAAGCTCTTTTAGACGA
GGGAAATGACTCCTTCAAAATTTCAGCTCTCTATCTCCCTAAGTCATCGT
GCCCTCCTGAAGGCACCTGTTTGGTGTGTGTGGCCCCAGGGAAATATACT
CTGTTGTAGGTGCTACAGACCAAGCAGTGTCTACCTAAGTTGCCTACCAA
CACTCAAGCAAGGTTGTTGAGGCTAAACTACCACAAATGCAAGGCGCAGC
ACCTTTGCGGCCCTTATCTCCGGCAGTTACTTCACCCCTTGTCACTATGT
TAACTTTCCACTATCATAGTACCACAAATCACCCACATATGTATGTTCAC
CCCCCTCCTCACTCCACTGTCTTATGCCCCCTAATCACCAATCCCCAATG
GTCAATGATGTTGTGCATACAACATCCTCACAAAATTTCTTGACGGAAAG
GCTGTGTGTCTATGTAGGACAGCACTGGGAGCACTTTATGGCTGCAAGGG
CCTTCACCAGCTGGAGGCGTTTTTGCCTGCACAGGGCTGATGCTGAGAAG
CTGTCAAAATCAGCCGAGGTGTTGAGAGGTAGAAGCATGCTATCCTCTGG
TTTTCGTGGACTGTTGGAGGCCTGCAGGTGTGTGAGCTGATTGTGTTTGG
GATACAGGGGAGGTGATGCTGGCTGAACTCCTTCAAATATCTTTCACTGT
CTACTGTTCTCAAACCTGTTCAAGTTCAAGTCTGGAAAGTATGGAGAGAT
CACCCCCAAGGATTCCTCTCCCACACATTCATTTATCCTCTCTGCACCTG
ACATTTCTTTGTGCGCTTGGTGGGTGCTCCGGAGCCCTCCCATAGACTAC
ACCAGCGGCAGCAATTCACTGAGGAAGCAGCAGTACTCCACTGCTCAAAC
GTGGTTGGAAAGACTTCCCTAAGGAGGTGGAGGGTGGTTGTGGCCTTCAG
GCATGACAGGCAAACCAAGACAAGGGCTGCCACATTACACTGGGCCAGAA
CGCTCTTGCGCAAGGTGGAAGGGGGTAGGGGGAAGGCAGGGGAGGAGGGG
GGAACTGGCCATTCTCTGTTGCAGTGTCAGGACAGAGGTGTTTCCCTAAA
GTGGAGAATGCTTGAGTGCCTTGCAACTTTTTCTCTAAGTACTTGATATA
ATTGAAGTATTGGTATTGCTTGGTGGAAAACGTGAATGTGGGGATTGGTC
TGTGGTCATAAGCTACTGCAGGCAAAGCTGTTGAAGAAGCAACAGAGACA
ATATATCACAAAGTCGGCTACAAACTTATGCTGCTATTTTTGCTTTGGAG
AAGCTCATTGATGAAGTGTGATTCTATTGATGGTTTAATCCACCAGGACG
GCCGCCTGTGCCCCTTGGGTCACACTCTAGCAGAAGTTGCTTCCCGAATT
TTACAGGCGCAAGCACTCTCAGTATGACTTAAGCCAACATTGAGCAGTGG
GGATGTGGTACAGAGAGCAACATTTACACGATAAAATCTTGCACTTGTGG
TTCTTAGTATTTACACTGCTCTATCTGAGTGAAAGTATCTTAGAGGGTAC
GAATTTTGCTCTGTTTGTCCATTTGGGGCTTGGTTTTCCACAGATTTTTT
TATGACATTTTCCTACTCCGAAATGTTTTGAAGTAAGTGAAATGTGTATG
TTATGAAAAGGTGTGTTTGGAACAAGGATATTGATACTTCCTGACAAACA
CAAGAGCCCAATTTGCATCAAAATCGCAACTTTGGATTTTGGCCCCCAAA
CGGATGCGGCTCTACCCTCAAAGATACTTTGGCTCATCTTCTAGTCCCAC
AATCTTTTGACATTCATACTATTATTATTATTTACTATGTTTTAGTGTGT
CACTCTTTAAATGCGTTTTTGAAAAGTATTCCTCTGCAACATGTAACACT
CTATGGTCCCCTACCCCGTTCTCCTCCTGCGTACAAATATTTTGCACTTT
CATGTCTACGTTTGTTTGTGACACTCAAACAGGTGATGTTCGAGTGGGAG
ACAGGGGCAGTGGAGCAGTGGGCAGTGCGGCAGCAAACTGAGGCGGCAGA
GCATCATTGGAGTTGTTCGGAGAAGAGGAAAGTGTTGGAAGTCTGGACTA
GAGCAAGGAACATGTTTTAGCATAAATTTTGGTCCATGAGTAGAGACATA
GGCAACTATGGCCCAGGGATGTTGGCAAGGAATTAGCGTGTGCAAGTAGG
ACCTATGCAGTAGCTGAGGGGGTAACTTTTGGATGTTACAACTGTCATAC
CCTACTGTGGCACACACAACTCAAGAATCCTATTACTTCAAACTCTGGAG
GATGCACAAATGTGCAGCAAAATGTTGTACTGTTAAAAGCTGGATTTGGC
GCTGGCTTGGTGTGTTGTGTTATGTTGATGATGCCGAACTTGATGCCACA
TCTATGGTTGCTGAGGTTTGAATTTCAAAACCAACACTGTTGGAGAAACT
TATACACAGAAGAAACAAGGTACGTTCAATTTTCCTCACCTTTATATTTA
TTCCAATGTTCGACTAGTTGTTACACTTTGATGCAATTGCGAAAATATTC
TGAAGTACGTAAATAATTATAGCGCTGAAGACCAACTCATTCATGAAGGA
GTGTACCTGGGGAAGTCAACAACATAATGCTTCAACCATGTGCAAGCTTA
TTGAAGGGATTTTGTCAAGTAGCTGGACAGATAATGCAAGAGGTTGAGAC
CGAGAAGGGGAATTGTTCTATTCATCCACCTCGATGATGTGCTGTTGTTA
TTGGTCATATTGATGCTATCTGTGTAATGTACATAAATCACCCCGACCAC
GTTCCATTTAAATATATGGTGTGGACCATGGTTTGT
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Coding sequence (CDS) from alignment at C-tenellus_contig1028:2..4337+

>mRNA_C-tenellus_contig1028.1.1 ID=mRNA_C-tenellus_contig1028.1.1|Name=mRNA_C-tenellus_contig1028.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1236bp|location=Sequence derived from alignment at C-tenellus_contig1028:2..4337+ (Choristocarpus tenellus KU2346)
ATGCTGGAGGGTGAGGTACATGCATGCGAGGAAATGAAGCGGCAGCAGGG
TCAAAAAGCCCTACGGACATGGAAACGGTGGCACCAACAACAGGAAGCAT
TGCGAAAGCGGGCGGACAACTTCTATCTCAGGCAGTGGCCACTGAAGGCC
TGGAGGGCTTCAGTGAGGGAAAGAGTGAAGGCACGAACCTGTGAGGTGTT
ATTGACTGCACGAGGCATTGCCCGGTGGCGCGATCTGGGGCTAAGGGCTG
GAATTTTGGGCTTGGAGCGTGAGGCATGGGAAGCTGGATTGATTGGATTA
GTTCAGCGGCGGTGTGGATTTCGTTCATGGCGGCGTTATGCAAAGGGAAG
GGTGGACCGGTATCAGATGTTGGAGACTGCAACTTTGCAGGAGTTGCAGT
GGATGGCAAGGAGGGGTCTCGGTGGCCTGAGGGGGAAGGTATGGAGGCAG
AGGAAAGGGTGCAGGGTGCTGGAACAGGGTGAGAGGTACCAATATCGGAA
TACAAAGATACAAGTCATTGAAAGATTGAGGGGTCTCCTAAGGGCCAGGA
GGCGTAAGTTTGTCCGAGCAGATACCTTCCACCGGCGTGTCACTGCCAAG
AACCTCCTCTCCCGCTGGTCAAGGGCAGCACGAATTCGGGTGCAGATGCG
ACAACTTTGGAGACTAGCAGTGAGTGTGGAGCGAAGACGTGCAAGGTACC
TGGGTATCACAGCCTTGGCGGAGGTGGCTGCTCGAGAGGTTGCCTCTCAA
AGGCTGTGTGTCTATGTAGGACAGCACTGGGAGCACTTTATGGCTGCAAG
GGCCTTCACCAGCTGGAGGCGTTTTTGCCTGCACAGGGCTGATGCTGAGA
AGCTGTCAAAATCAGCCGAGGTGTTGAGAGGTAGAAGCATGCTATCCTCT
GGTTTTCGTGGACTGTTGGAGGCCTGCAGACTACACCAGCGGCAGCAATT
CACTGAGGAAGCAGCAGTACTCCACTGCTCAAACGTGGTTGGAAAGACTT
CCCTAAGGAGGTGGAGGGTGGTTGTGGCCTTCAGGCATGACAGGCAAACC
AAGACAAGGGCTGCCACATTACACTGGGCCAGAACGCTCTTGCGCAAGGT
GATGTTCGAGTGGGAGACAGGGGCAGTGGAGCAGTGGGCAGTGCGGCAGC
AAACTGAGGCGGCAGAGCATCATTGGAGTTGTTCGGAGAAGAGGAAAGTG
TTGGAAGTCTGGACTAGAGCAAGGAACATGTTTTAG
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