mRNA_C-tenellus_contig10259.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10259.1.1
Unique NamemRNA_C-tenellus_contig10259.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10259.1.1 vs. uniprot
Match: D7FPV9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPV9_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 1.350e-16
Identity = 55/84 (65.48%), Postives = 60/84 (71.43%), Query Frame = 1 
Query:    1 RGERLRRREEEREAKRAAKRVKLGKCPKAPGRSDSHEDRGKKRATKRRLEVARLGRLVAKQEELLGDYHPPKVKEVLDPELKRK 252
            RGERLR+RE ER  KRA KR KLGK P    RS  +E + KK A KRRLE+ARL RLV+KQEELL DY PP     LDPELKRK
Sbjct:    3 RGERLRKREAERAEKRAKKRRKLGKKPLTVDRSGGYESQPKKHANKRRLELARLERLVSKQEELLRDYRPPVHVAPLDPELKRK 86
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10259.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FPV9_ECTSI1.350e-1665.48Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10259contigC-tenellus_contig10259:3..1321 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FPV9
Model size606
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue5.72e-18
EggNOG OGs2C0FH@1|root,2QU7Q@2759|Eukaryota
Cds size468
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789123.4652135-UTR-C-tenellus_contig10259:2..1401680789123.4652135-UTR-C-tenellus_contig10259:2..140Choristocarpus tenellus KU2346UTRC-tenellus_contig10259 3..140 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789123.4817247-CDS-C-tenellus_contig10259:140..4581680789123.4817247-CDS-C-tenellus_contig10259:140..458Choristocarpus tenellus KU2346CDSC-tenellus_contig10259 141..458 -
1680789123.4923804-CDS-C-tenellus_contig10259:1171..13211680789123.4923804-CDS-C-tenellus_contig10259:1171..1321Choristocarpus tenellus KU2346CDSC-tenellus_contig10259 1172..1321 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10259.1.1prot_C-tenellus_contig10259.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10259 141..1321 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10259.1.1

>prot_C-tenellus_contig10259.1.1 ID=prot_C-tenellus_contig10259.1.1|Name=mRNA_C-tenellus_contig10259.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=156bp
RGERLRRREEEREAKRAAKRVKLGKCPKAPGRSDSHEDRGKKRATKRRLE
VARLGRLVAKQEELLGDYHPPKVKEVLDPELKRKVSVVPVLYGSAVSLLP
CGTPPFYFCGTGALLCGPTTVLPGSTTDLCDTDTTVLCSNIVALGANKET
KVLRL*
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mRNA from alignment at C-tenellus_contig10259:3..1321-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10259.1.1 ID=mRNA_C-tenellus_contig10259.1.1|Name=mRNA_C-tenellus_contig10259.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1319bp|location=Sequence derived from alignment at C-tenellus_contig10259:3..1321- (Choristocarpus tenellus KU2346)
AGAGGAGAGCGCTTGCGTAGGAGAGAGGAGGAGCGGGAGGCAAAGAGGGC
AGCAAAGAGAGTGAAACTTGGGAAATGCCCCAAAGCTCCCGGACGATCCG
ATAGCCATGAGGACAGGGGGAAGAAGCGAGCAACTAAACGAAGGCTTGAG
GTTAGAGAACTCCCAACCCCAACCCCTAATGTTGCAAGTCTCGGTGAATA
CCATGTGAAACAATCAGGCCTGGAACTGATTGGTTACCGTTTTCTTTCTT
GAGGAATGTATCAATATCATTTTGGCATCCCCACTGCTTTATCCAATACT
TCCAATGCCTCAATGTATCCAGTTAACAAACCTTCCATTGTGTCTATTGA
TCACCAATCAGGGGCGTTTACTTAAACACCAGCACTCCCTAGTTTTGTCA
CAGATGATTGAACACCTAGTGGAATATATGTTACAAACACAGCATTACCA
AAGTTGGAATCTGATAGGATTCCATGCCTCTATTTTCCAACCCTTTTTTC
AAGCCCCTCTCCCTCATTGCCAACAATTGTTCCTGAGATGCCAAGATACA
GGGTATGTGGCAGTACTACTCCGCGAAACCAAAAAATAATGTAAAAGATT
GTCACCAAATGCATACAATGTGCGCACCCTGAAATGCTTTGAAGATCTGA
ACAAGCGGAAGGTATACCTTGTAATGACAGCACCCGCGTGAGAGGTGTAC
TGTATCCACTGGTGCAATCAGATGACCCGGGAGTTGGGCCAAATACTGTC
ATCCTCTCTAGATAACCTCACTCCTCAAAGGCAACAAACATGCACATGTG
TACGCACACACACCTAAAGATACCACACACACAGTCAAGATGGTACTCTT
GTGTTGGTGTCAGGTGGCACGCCTTGGCCGCCTTGTGGCGAAGCAAGAGG
AGTTACTTGGCGATTATCACCCCCCAAAGGTGAAGGAAGTCTTGGACCCG
GAGTTGAAGCGCAAGGTAAGTGTGGTACCAGTACTGTATGGTTCTGCGGT
TTCACTACTGCCCTGTGGAACACCTCCATTCTACTTTTGTGGTACCGGTG
CTTTGTTGTGTGGTCCTACCACGGTACTACCTGGTTCCACTACGGATCTG
TGCGATACTGATACTACTGTGCTCTGTAGCAACATTGTGGCTCTGGGGGC
AAATAAAGAAACAAAAGTGTTACGATTGTAATTGCTGTCATCATGCGCCT
GCAAGTGGCAGTATCCGCGGTATGTTTGAGGCATGTATTGTAGGTAAGTC
TTGCTAAGTACTTTGGCATTCCTAAGTTTTTCTAGTATACTGTATGGACC
CAAAGTATCTGGGAGGGGG
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Coding sequence (CDS) from alignment at C-tenellus_contig10259:3..1321-

>mRNA_C-tenellus_contig10259.1.1 ID=mRNA_C-tenellus_contig10259.1.1|Name=mRNA_C-tenellus_contig10259.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=468bp|location=Sequence derived from alignment at C-tenellus_contig10259:3..1321- (Choristocarpus tenellus KU2346)
AGAGGAGAGCGCTTGCGTAGGAGAGAGGAGGAGCGGGAGGCAAAGAGGGC
AGCAAAGAGAGTGAAACTTGGGAAATGCCCCAAAGCTCCCGGACGATCCG
ATAGCCATGAGGACAGGGGGAAGAAGCGAGCAACTAAACGAAGGCTTGAG
GTGGCACGCCTTGGCCGCCTTGTGGCGAAGCAAGAGGAGTTACTTGGCGA
TTATCACCCCCCAAAGGTGAAGGAAGTCTTGGACCCGGAGTTGAAGCGCA
AGGTAAGTGTGGTACCAGTACTGTATGGTTCTGCGGTTTCACTACTGCCC
TGTGGAACACCTCCATTCTACTTTTGTGGTACCGGTGCTTTGTTGTGTGG
TCCTACCACGGTACTACCTGGTTCCACTACGGATCTGTGCGATACTGATA
CTACTGTGCTCTGTAGCAACATTGTGGCTCTGGGGGCAAATAAAGAAACA
AAAGTGTTACGATTGTAA
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