mRNA_C-tenellus_contig10227.1.2 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10227.1.2
Unique NamemRNA_C-tenellus_contig10227.1.2
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
[Close]
BLAST of mRNA_C-tenellus_contig10227.1.2 vs. uniprot
Match: D7FKL3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKL3_ECTSI)

HSP 1 Score: 127 bits (320), Expect = 1.720e-29
Identity = 85/190 (44.74%), Postives = 126/190 (66.32%), Query Frame = 2 
Query:  248 EMERELRLQRLQQVREQSREHAAAVREEYRQRHRDGMQEAVEKTRRDFETTKRADLAAMNSQLQQKLLGVGCAHRLAVCTKMAQEREGERIRATRSVSAERRRSRTTKAIEKRAAELREAGQEEVVAHQRLQVWRGIGEAGRSCAKDYQQRRASRTLASEEQRQNSERQQRERAVRGREVKLAGSRVTQV 817
            E+E+ LRL+RL+QVR+QSR+ AAAVREEYR+R  +  + A+++++R FE  + A+L ++N QLQ KLL VG AHR+A C+ +A+E E ER+RA RSVSAERRR+R   A  KR  ELREA +E  +A QR +VW+  G+  R  A++    + +   A   + +    + R+RA +G  V+   + V +V
Sbjct:    2 EIEKGLRLRRLEQVRQQSRQQAAAVREEYRRRQAENKRAALQESKRHFEDNRAAELLSLNQQLQAKLLEVGTAHRMAACSTLAREGEEERLRAKRSVSAERRRNRNLLAATKRETELREARRESDLAQQRQEVWKDEGDDERLRAREAAVMQEAVAAARRAREEFESERLRQRAEKGGSVRTTQAPVVEV 191
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10227.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FKL3_ECTSI1.720e-2944.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10227contigC-tenellus_contig10227:510..3883 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size841
Hectar predicted targeting categoryother localisation
Exons4
Cds size795
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789121.9123116-CDS-C-tenellus_contig10227:509..7071680789121.9123116-CDS-C-tenellus_contig10227:509..707Choristocarpus tenellus KU2346CDSC-tenellus_contig10227 510..707 -
1680789121.9240165-CDS-C-tenellus_contig10227:2356..24831680789121.9240165-CDS-C-tenellus_contig10227:2356..2483Choristocarpus tenellus KU2346CDSC-tenellus_contig10227 2357..2483 -
1680789121.9319293-CDS-C-tenellus_contig10227:3042..31761680789121.9319293-CDS-C-tenellus_contig10227:3042..3176Choristocarpus tenellus KU2346CDSC-tenellus_contig10227 3043..3176 -
1680789121.9397645-CDS-C-tenellus_contig10227:3501..38371680789121.9397645-CDS-C-tenellus_contig10227:3501..3837Choristocarpus tenellus KU2346CDSC-tenellus_contig10227 3502..3837 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789121.9521282-UTR-C-tenellus_contig10227:3837..38831680789121.9521282-UTR-C-tenellus_contig10227:3837..3883Choristocarpus tenellus KU2346UTRC-tenellus_contig10227 3838..3883 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10227.1.2prot_C-tenellus_contig10227.1.2Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10227 510..3837 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10227.1.2

>prot_C-tenellus_contig10227.1.2 ID=prot_C-tenellus_contig10227.1.2|Name=mRNA_C-tenellus_contig10227.1.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=265bp
MPQSNSHRRKMGVAVGGTPAERGRGGGATATRHVGGEANRETRHKSVPKY
PYGHLRYSTGEAEAVRKEMERELRLQRLQQVREQSREHAAAVREEYRQRH
RDGMQEAVEKTRRDFETTKRADLAAMNSQLQQKLLGVGCAHRLAVCTKMA
QEREGERIRATRSVSAERRRSRTTKAIEKRAAELREAGQEEVVAHQRLQV
WRGIGEAGRSCAKDYQQRRASRTLASEEQRQNSERQQRERAVRGREVKLA
GSRVTQVYAGEDRV*
back to top

mRNA from alignment at C-tenellus_contig10227:510..3883-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10227.1.2 ID=mRNA_C-tenellus_contig10227.1.2|Name=mRNA_C-tenellus_contig10227.1.2|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3374bp|location=Sequence derived from alignment at C-tenellus_contig10227:510..3883- (Choristocarpus tenellus KU2346)
CCTGTTCTAGATATGAATGTCTTGACTCGTTGCAAGAGGGGGTAGCATGC
CCCAATCCAACTCTCATCGTCGGAAAATGGGTGTGGCGGTTGGGGGTACA
CCTGCTGAACGAGGACGTGGGGGGGGGGCAACTGCAACGAGACATGTTGG
TGGAGAGGCGAATCGAGAAACGAGGCACAAATCGGTACCAAAGTATCCAT
ATGGCCACCTTCGATATAGCACAGGAGAGGCGGAAGCTGTTAGAAAGGAG
ATGGAGCGTGAACTTCGCCTCCAAAGGCTGCAACAGGTTCGGGAGCAATC
TCGTGAGCATGCGGCAGCGGTGAGGGAGGAGTACAGGCAAAGACACAGGG
ATGGTATGCAAGAAGCGGTGGAAAAGACGAGGGTGAGTGAAAACTGACTT
TCTCCACGATAATTTTATCAACCAGATCTATTGTTGTACAGGAGGCTCTC
CCCTTGTTAATTTAAGCAATCTTCTGTTGCTTACTACAATCGGACAACCC
ATTGTTCTTCAGCCTCCAAATGGTCGAAGTTGCCCCATTGAAACAAGAAC
TGGAGATATTGCGATTTATTGTCACGCTCAGCTGTATGCTCTCGCACTCC
ATGTTTGGTACGCCGATCTTGTCTGTGCCTTGCCAGGGCTGCAATTTGTA
CTGCCATCTTTTTCAACCTCTCACACTACTTCTCATTCCACCACATATCG
CGATCAGCGTGACTTCGAGACAACGAAGCGGGCAGATCTTGCTGCAATGA
ACTCGCAGCTCCAACAGAAGCTACTGGGCGTCGGCTGTGCCCACCGTCTC
GCTGTATGCACTAAAATGGCACAGGAGAGGGAGGGGGAAAGGTAACCATT
AACATACTGACCCACTTTCCTCGTTCCCAACTCTCGCTGACATGCACTCT
CTCGCCACTGTACTTATTATATTCAAAGGCTGTCCAGCAGTACCCCCTCG
CACCCCAATCCAACACGAAGTTCGTGGATACTCTCCAACACAGTCGCCTT
ACCAACCTTATGCCGCCCCCTTGTTGAGTTCTCGTTGTCTTGTGAGCTCG
GAGGTATCCCCCCCACTCCTGCACCTCCTAAGTTTTCAGCTACCCAGAAC
GTATGATGAGAGGAAATTGCACTAACAAGTACAATAGACCATTCCATAGA
ACAATCAATTCTACTCCCAGCTCTCTCGACAGATTTAATTCTTCAACCCA
CTGGTTGCTTCAGGAACCGAGACACAGCTCTAGCACAGGGCCCCCTCACC
CCGTTCAGACTCCCCACCCTCCAAATCTCCTTTTTTTGGTTCTGAAATAT
GCACCGTCAAAAAAAGTAACTGAAGCAGTGTTGGTCCCATGCCTTGGAAA
GGGCTCGGTGCCTCATTGATGCTATCGCGATTGTGTTATAACTGTGCCAG
GATAAGGGCAACAAGGTCAGTCAGTGCAGAGCGCAGGAGGTCCAGAACGA
CCAAGGCAATTGAAAAGAGGGCGGCAGAATTGAGAGAGGCTGGGCAAGAG
GAAGTGGTGGCTCACCAGAGGCTCCAGGTGGGTTGACACCGCTACCATAC
TCACCAATTTTTTTGTCTAGCGGCATTGCTCTACACGGTTTTTGTGTTTT
TGTGATTCTGTGTGTGTAGCTGTTTTTTTTATTACTATTGTTTTTATTGT
TATTAGTGCTATTACTGTTACTGTTGTGCATGTGCGAGCCAACTGCCATG
CATTTTTTTGTATTCAAAGCAAGAGCATGCCAAAAGAAGATTGTACTTGT
GTGGAGTTTCATTAAAAAACACTTAATATATATATATATTTATTCTAGAA
GGTAACTCAGAAGGTGTACCTTTTTGGAGTGCCAGTATTTTCTTTTCGAG
ATTTTTTTGTTTTTGTTTGAAGGAAGAGAGCGTCATTTGAAGGCTGTACT
TTCAGAGTATCAAAAATTAGAGTTTGATATCGTAGACAAGAGGGTATTGT
GGTCGGTGACCTTGTCCTTCCCTTGCAACTAGGATAGGTTAACCGTCTTT
ATTTTGAAGGCAGTACAGAAACGGGGATAGGGTTAGGGGTTATGGTTATG
GTTATGGTTAAGGTTGGAGTTAAAGTGAGAACAATTGCACCCATATTGAA
GGCAGTATAGGAATGGGGATAGGGTTGGGGGTTGTGGTTAGGGGTTAGGG
TTAAGTTTAAAGTTGAAGTTAAAGTGAGAACAATTGCGCCCATATTGAAG
GCAGTACAGGAATGGGGATAGGGTTGGGGGTTGTGGTTAGGGTTAGGGTT
GGAGTTAAAGCGATAAAGTGCCGTCTCTTTGGTCTTTTCTCATTACTCTA
AAAATACGCCTGATCATAGTGGTTTATAAATTTATGTTTATAAATTTATG
TTTAAAGAATCACACACATTTTGATCGGTACGAAACATGTGGAGACAGAG
TATTGATGCAAACAGACGGCCTATGTTTTGTTTTGTTTTGTTTTGTTTTT
CTAAAAGAAAAAAGAGACGTATGCTGTGGATGCAAATGATTTGTGACTTC
CTGTTTGTAGTACTGATGCTGTTCTTTTTTTGTTGAGCTTTATTTTTTAA
CATATATTTTATTTTTATCCACCTGTGTTGAAAGTGCCGATCCAACATAT
TTACAGCGATACAAGGACAATGAGTATTTTTTAGAACGATTTTCAACCAT
TATTTTAAAACCGTGATAGAATCATGATAATACCATGATAGTATCATCAT
GATGATATCGCAATAGTGCTGTGATGATACCACGATAAGATATTACGATA
AGATATCGCGATAAGATATCACGACAATACCGCAATAACAATGTATATTT
TTGTTTTTTTCTGTTTTATTTTTATTCTGTTGTTCTGAAGTGTTACTTGT
TTTGTTCTGAAGTGAAAAAAACCAAAGGGAAAAAAATAAGTAAAAGATAA
AACTTCTATACTTAGTACTATACTTCATACCCTATGTCATACTATACTTC
ATACTATACTTCATACTATACTTCATACTATACTTCATACCATACCCTAT
AATGGGCAGACACGAGTCGAAGATGGATAGGAGATCTAGCTATACATGCA
TATATATACCTATTCATTTCATATTCTTGTTAACAGGACCTTCCCTCAGA
TCCAAGCACTAAGGAAAAGCCTCCTATTGTCCTAGTAAGCTATTTGATTC
CACTGTTGCTGATGCATTGCTATCAGGTGTGGAGAGGTATAGGGGAGGCT
GGGCGCTCATGTGCTAAGGATTATCAGCAGCGGCGAGCATCTAGAACTCT
AGCCTCTGAGGAACAGAGACAGAACTCTGAGAGGCAACAGAGGGAAAGGG
CGGTGAGGGGTAGGGAGGTTAAACTCGCTGGCTCCAGGGTGACTCAGGTA
TATGCTGGGGAGGATAGGGTCTGA
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig10227:510..3883-

>mRNA_C-tenellus_contig10227.1.2 ID=mRNA_C-tenellus_contig10227.1.2|Name=mRNA_C-tenellus_contig10227.1.2|organism=Choristocarpus tenellus KU2346|type=CDS|length=795bp|location=Sequence derived from alignment at C-tenellus_contig10227:510..3883- (Choristocarpus tenellus KU2346)
ATGCCCCAATCCAACTCTCATCGTCGGAAAATGGGTGTGGCGGTTGGGGG
TACACCTGCTGAACGAGGACGTGGGGGGGGGGCAACTGCAACGAGACATG
TTGGTGGAGAGGCGAATCGAGAAACGAGGCACAAATCGGTACCAAAGTAT
CCATATGGCCACCTTCGATATAGCACAGGAGAGGCGGAAGCTGTTAGAAA
GGAGATGGAGCGTGAACTTCGCCTCCAAAGGCTGCAACAGGTTCGGGAGC
AATCTCGTGAGCATGCGGCAGCGGTGAGGGAGGAGTACAGGCAAAGACAC
AGGGATGGTATGCAAGAAGCGGTGGAAAAGACGAGGCGTGACTTCGAGAC
AACGAAGCGGGCAGATCTTGCTGCAATGAACTCGCAGCTCCAACAGAAGC
TACTGGGCGTCGGCTGTGCCCACCGTCTCGCTGTATGCACTAAAATGGCA
CAGGAGAGGGAGGGGGAAAGGATAAGGGCAACAAGGTCAGTCAGTGCAGA
GCGCAGGAGGTCCAGAACGACCAAGGCAATTGAAAAGAGGGCGGCAGAAT
TGAGAGAGGCTGGGCAAGAGGAAGTGGTGGCTCACCAGAGGCTCCAGGTG
TGGAGAGGTATAGGGGAGGCTGGGCGCTCATGTGCTAAGGATTATCAGCA
GCGGCGAGCATCTAGAACTCTAGCCTCTGAGGAACAGAGACAGAACTCTG
AGAGGCAACAGAGGGAAAGGGCGGTGAGGGGTAGGGAGGTTAAACTCGCT
GGCTCCAGGGTGACTCAGGTATATGCTGGGGAGGATAGGGTCTGA
back to top