mRNA_C-tenellus_contig10223.1.2 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10223.1.2
Unique NamemRNA_C-tenellus_contig10223.1.2
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig10223.1.2 vs. uniprot
Match: A0A7S2V4J2_9STRA (KRR-R motif-containing protein 1 (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4J2_9STRA)

HSP 1 Score: 174 bits (440), Expect = 2.530e-53
Identity = 85/109 (77.98%), Postives = 91/109 (83.49%), Query Frame = 1
Query:    1 KNHNKYRRDKPWDNANIDHWAISSWKDDDMKVSRFQDSSLLEESSFATLFPKYREKYLREVWPIVTKALEKRGLACELDLIEGSMTVRTTRKTRDPYAIIKARDLIKLL 327
            KNHNKYRRDKPWDN NIDHW +  W  +DMK       +LLEESSFATLFPKYREKYLREVWPIVTKAL+  G+ CEL+LIEGSMTVRTTRKT DPY IIKARDLIKLL
Sbjct:   27 KNHNKYRRDKPWDNENIDHWKVEQWNKEDMK------GALLEESSFATLFPKYREKYLREVWPIVTKALQAVGIGCELNLIEGSMTVRTTRKTSDPYIIIKARDLIKLL 129          
BLAST of mRNA_C-tenellus_contig10223.1.2 vs. uniprot
Match: A0A836CN64_9STRA (KRR1 small subunit processome component n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN64_9STRA)

HSP 1 Score: 174 bits (440), Expect = 4.400e-51
Identity = 82/109 (75.23%), Postives = 94/109 (86.24%), Query Frame = 1
Query:    1 KNHNKYRRDKPWDNANIDHWAISSWKDDDMKVSRFQDSSLLEESSFATLFPKYREKYLREVWPIVTKALEKRGLACELDLIEGSMTVRTTRKTRDPYAIIKARDLIKLL 327
            KN+ KYRRDKPWDN +IDHWA   WKD+DM         LLEESSFATLFPKYREKYLREVWP+VTKALEKRG+ CELDL+EGSMTVRT+R+TRDPYA++KARD++KLL
Sbjct:   17 KNNRKYRRDKPWDNESIDHWAQPEWKDEDMP------GPLLEESSFATLFPKYREKYLREVWPMVTKALEKRGIGCELDLVEGSMTVRTSRRTRDPYAVVKARDVVKLL 119          
BLAST of mRNA_C-tenellus_contig10223.1.2 vs. uniprot
Match: A0A812WNJ2_SYMMI (KRR-R motif-containing protein 1 n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812WNJ2_SYMMI)

HSP 1 Score: 167 bits (422), Expect = 1.920e-50
Identity = 79/109 (72.48%), Postives = 92/109 (84.40%), Query Frame = 1
Query:    1 KNHNKYRRDKPWDNANIDHWAISSWKDDDMKVSRFQDSSLLEESSFATLFPKYREKYLREVWPIVTKALEKRGLACELDLIEGSMTVRTTRKTRDPYAIIKARDLIKLL 327
            KNH KYR+DKPWD+ ++DHW +  W  + +K      SSLLEESSFATLFPKYREKYLREVWPIVTKALE  G++CEL+L+EGSMTVRTTRKT+DPY I+KARDLIKLL
Sbjct:    4 KNHKKYRKDKPWDDKDVDHWKVEEWNPEHLK------SSLLEESSFATLFPKYREKYLREVWPIVTKALEGHGVSCELNLVEGSMTVRTTRKTKDPYVIMKARDLIKLL 106          
BLAST of mRNA_C-tenellus_contig10223.1.2 vs. uniprot
Match: A0A7S2DCQ6_9STRA (KRR-R motif-containing protein 1 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DCQ6_9STRA)

HSP 1 Score: 169 bits (427), Expect = 7.280e-49
Identity = 81/109 (74.31%), Postives = 90/109 (82.57%), Query Frame = 1
Query:    1 KNHNKYRRDKPWDNANIDHWAISSWKDDDMKVSRFQDSSLLEESSFATLFPKYREKYLREVWPIVTKALEKRGLACELDLIEGSMTVRTTRKTRDPYAIIKARDLIKLL 327
            KNHNKYRRDKPWDN  IDHW +  W + DM        SLLEESSFATLFPKYREKYLREVWP+VT+ L+K+ +ACELDLIEGSMTV+TTRKT DPY I+KARDLIKLL
Sbjct:    4 KNHNKYRRDKPWDNDEIDHWKLEDWNEGDMH------GSLLEESSFATLFPKYREKYLREVWPLVTRTLDKQKIACELDLIEGSMTVKTTRKTNDPYIILKARDLIKLL 106          
BLAST of mRNA_C-tenellus_contig10223.1.2 vs. uniprot
Match: A0A7S2KVF1_9STRA (KRR1 small subunit processome component n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KVF1_9STRA)

HSP 1 Score: 167 bits (423), Expect = 3.950e-48
Identity = 79/109 (72.48%), Postives = 91/109 (83.49%), Query Frame = 1
Query:    1 KNHNKYRRDKPWDNANIDHWAISSWKDDDMKVSRFQDSSLLEESSFATLFPKYREKYLREVWPIVTKALEKRGLACELDLIEGSMTVRTTRKTRDPYAIIKARDLIKLL 327
            KNHNKYRRDKPWDN +IDHW++S W  DD          LLEESSFATLFPKYREKYLREVWP++T++L+K  +ACEL+L+EGSMTVRTTRKT DPY I+KARDLIKLL
Sbjct:   14 KNHNKYRRDKPWDNPDIDHWSVSPW--DDTAGDNLPGGRLLEESSFATLFPKYREKYLREVWPLITRSLDKVKIACELNLVEGSMTVRTTRKTSDPYVILKARDLIKLL 120          
BLAST of mRNA_C-tenellus_contig10223.1.2 vs. uniprot
Match: B8C0X8_THAPS (KRR1 small subunit processome component n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C0X8_THAPS)

HSP 1 Score: 167 bits (422), Expect = 5.110e-48
Identity = 80/109 (73.39%), Postives = 92/109 (84.40%), Query Frame = 1
Query:    1 KNHNKYRRDKPWDNANIDHWAISSWKDDDMKVSRFQDSSLLEESSFATLFPKYREKYLREVWPIVTKALEKRGLACELDLIEGSMTVRTTRKTRDPYAIIKARDLIKLL 327
            KNHNKYRRDKPWDN +IDHWAI+ W D++          LLEESSFATLFPKYREKYLREVWP+VTK+L+K  +ACEL+L+EGSMTVRTT+KT DPY I+KARDLIKLL
Sbjct:   22 KNHNKYRRDKPWDNPSIDHWAITPW-DEETNNDSLPGGRLLEESSFATLFPKYREKYLREVWPLVTKSLDKYKVACELNLVEGSMTVRTTKKTSDPYIILKARDLIKLL 129          
BLAST of mRNA_C-tenellus_contig10223.1.2 vs. uniprot
Match: A0A196SI70_BLAHN (KRR1 small subunit processome component n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SI70_BLAHN)

HSP 1 Score: 161 bits (408), Expect = 8.720e-47
Identity = 76/104 (73.08%), Postives = 87/104 (83.65%), Query Frame = 1
Query:   16 YRRDKPWDNANIDHWAISSWKDDDMKVSRFQDSSLLEESSFATLFPKYREKYLREVWPIVTKALEKRGLACELDLIEGSMTVRTTRKTRDPYAIIKARDLIKLL 327
            YR+DKPWD  +IDHW I  WKDDDMK        LLEESSFAT+FP+YRE+YLREVWP+VTK L+K G+ACELD IEG+MTVRTTRKT+DPY I+KARDLIKLL
Sbjct:   24 YRKDKPWDGDHIDHWKIEEWKDDDMKAP------LLEESSFATMFPRYREQYLREVWPLVTKELDKVGIACELDCIEGTMTVRTTRKTKDPYIIVKARDLIKLL 121          
BLAST of mRNA_C-tenellus_contig10223.1.2 vs. uniprot
Match: A0A5A8CHK8_CAFRO (KRR1 small subunit processome component n=5 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CHK8_CAFRO)

HSP 1 Score: 163 bits (412), Expect = 1.190e-46
Identity = 79/109 (72.48%), Postives = 91/109 (83.49%), Query Frame = 1
Query:    1 KNHNKYRRDKPWDNANIDHWAISSWKDDDMKVSRFQDSSLLEESSFATLFPKYREKYLREVWPIVTKALEKRGLACELDLIEGSMTVRTTRKTRDPYAIIKARDLIKLL 327
            KNHNKYRRDKPWD+  IDHWAI  W    MK       SL+EESSFATLFP+YREKYLRE+WP VTKALE +G+ACEL+L+EGSMTV+TTRKTRDP+ I+KARDLI+LL
Sbjct:   31 KNHNKYRRDKPWDHDGIDHWAIPEWDPAMMK------HSLVEESSFATLFPQYREKYLREIWPAVTKALEAQGIACELNLVEGSMTVKTTRKTRDPFIILKARDLIRLL 133          
BLAST of mRNA_C-tenellus_contig10223.1.2 vs. uniprot
Match: K0TB32_THAOC (KRR-R motif-containing protein 1 n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TB32_THAOC)

HSP 1 Score: 163 bits (412), Expect = 1.840e-46
Identity = 79/109 (72.48%), Postives = 89/109 (81.65%), Query Frame = 1
Query:    1 KNHNKYRRDKPWDNANIDHWAISSWKDDDMKVSRFQDSSLLEESSFATLFPKYREKYLREVWPIVTKALEKRGLACELDLIEGSMTVRTTRKTRDPYAIIKARDLIKLL 327
            KNHNKYRRDKPWDNA+IDHW  + W  D+          LLEESSFATLFPKYREKYLREVWP+VT+ L+K  +ACEL+L+EGSMTVRTTRKT DPY I+KARDLIKLL
Sbjct:   26 KNHNKYRRDKPWDNADIDHWENNPW--DESTGDTLPGGRLLEESSFATLFPKYREKYLREVWPLVTRTLDKYKIACELNLVEGSMTVRTTRKTSDPYIILKARDLIKLL 132          
BLAST of mRNA_C-tenellus_contig10223.1.2 vs. uniprot
Match: B7FXP7_PHATC (KRR1 small subunit processome component n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FXP7_PHATC)

HSP 1 Score: 161 bits (408), Expect = 3.020e-46
Identity = 74/109 (67.89%), Postives = 91/109 (83.49%), Query Frame = 1
Query:    1 KNHNKYRRDKPWDNANIDHWAISSWKDDDMKVSRFQDSSLLEESSFATLFPKYREKYLREVWPIVTKALEKRGLACELDLIEGSMTVRTTRKTRDPYAIIKARDLIKLL 327
            KNHNKYRRDKPWDN +IDHW ++SW  DD          LLEESSFATLFPKYRE YLR++WP+VT+ L++ G+ACEL+L+EGSMTVRTT++T+DPY I+KARDL+KLL
Sbjct:   14 KNHNKYRRDKPWDNDDIDHWKLASWNADD-GGDTLPGGRLLEESSFATLFPKYREAYLRQIWPVVTRHLDQHGVACELNLVEGSMTVRTTKRTKDPYVILKARDLLKLL 121          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10223.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2V4J2_9STRA2.530e-5377.98KRR-R motif-containing protein 1 (Fragment) n=1 Ta... [more]
A0A836CN64_9STRA4.400e-5175.23KRR1 small subunit processome component n=1 Tax=Tr... [more]
A0A812WNJ2_SYMMI1.920e-5072.48KRR-R motif-containing protein 1 n=1 Tax=Symbiodin... [more]
A0A7S2DCQ6_9STRA7.280e-4974.31KRR-R motif-containing protein 1 n=1 Tax=Dictyocha... [more]
A0A7S2KVF1_9STRA3.950e-4872.48KRR1 small subunit processome component n=1 Tax=Sk... [more]
B8C0X8_THAPS5.110e-4873.39KRR1 small subunit processome component n=1 Tax=Th... [more]
A0A196SI70_BLAHN8.720e-4773.08KRR1 small subunit processome component n=1 Tax=Bl... [more]
A0A5A8CHK8_CAFRO1.190e-4672.48KRR1 small subunit processome component n=5 Tax=Ca... [more]
K0TB32_THAOC1.840e-4672.48KRR-R motif-containing protein 1 n=1 Tax=Thalassio... [more]
B7FXP7_PHATC3.020e-4667.89KRR1 small subunit processome component n=2 Tax=Ph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10223contigC-tenellus_contig10223:2976..4392 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog35128.Thaps268598
Model size327
Max annot lvl2836|Bacillariophyta
KEGG koko:K06961
Hectar predicted targeting categoryother localisation
Exons3
Evalue8.38e-49
EggNOG OGsCOG1094@1|root,KOG2874@2759|Eukaryota,2XBS2@2836|Bacillariophyta
Ec32 ortholog descriptionK Homology domain, type 1
Ec32 orthologEc-09_003790.1
DescriptionRequired for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly
Cds size327
COG categoryA
BRITEko00000,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789121.7898827-CDS-C-tenellus_contig10223:2975..30861680789121.7898827-CDS-C-tenellus_contig10223:2975..3086Choristocarpus tenellus KU2346CDSC-tenellus_contig10223 2976..3086 +
1680789121.801642-CDS-C-tenellus_contig10223:3383..34821680789121.801642-CDS-C-tenellus_contig10223:3383..3482Choristocarpus tenellus KU2346CDSC-tenellus_contig10223 3384..3482 +
1680789121.8116076-CDS-C-tenellus_contig10223:4275..43921680789121.8116076-CDS-C-tenellus_contig10223:4275..4392Choristocarpus tenellus KU2346CDSC-tenellus_contig10223 4276..4392 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10223.1.2prot_C-tenellus_contig10223.1.2Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10223 2976..4392 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10223.1.2

>prot_C-tenellus_contig10223.1.2 ID=prot_C-tenellus_contig10223.1.2|Name=mRNA_C-tenellus_contig10223.1.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=109bp
KNHNKYRRDKPWDNANIDHWAISSWKDDDMKVSRFQDSSLLEESSFATLF
PKYREKYLREVWPIVTKALEKRGLACELDLIEGSMTVRTTRKTRDPYAII
KARDLIKLL
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mRNA from alignment at C-tenellus_contig10223:2976..4392+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10223.1.2 ID=mRNA_C-tenellus_contig10223.1.2|Name=mRNA_C-tenellus_contig10223.1.2|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1417bp|location=Sequence derived from alignment at C-tenellus_contig10223:2976..4392+ (Choristocarpus tenellus KU2346)
AAGAATCACAATAAATACCGACGAGACAAGCCTTGGGACAATGCCAATAT CGACCACTGGGCCATCTCATCCTGGAAGGACGACGATATGAAGGTTAGCC GCTTCCAGGATGTTATCTGGGTCGGCTGGATCAATGCCGAGCTCTACTAA GTGGTACGCTCTAGTGGCACATAAGAAACTAGCAGTCGTGGCGGTACGGA GGCATCAATGACCCTCACGAAAATGCCATATAATGTCGAAATGGCCCATT GTTTCAGTAATGATGCGACCGGATGAATGCGTAGCCCTTCCCTTCTATGC TATTGCTATATAATTGAGGTATTAACCAGAATCGGGCGACGCGCAAAGCA TGCAAGCAATCGCAAACTCATTGATGACGATGCCCCTTCTTTGTACTATC TTTAACAGTCAAGTTTGCTCGAGGAGAGCAGCTTCGCTACTCTATTCCCA AAGTACCGAGAGAAGTACCTACGAGAGGTGTGGCCAATTGTCACGAAGGC CCTCGAGGTGCGATGACATTTCTTGCTCTGGCATGGAGTTGCTGGTGCAT ATCATACGGTATAGTTTTGAGAAAGTCCAGTAGTTTTTTTCCCATTTCGC TTCGTGATTGGACTGCTGATGCTTTATATCCCCACAGCTCAACTGGCAAC TTCCAACGTGCTAGGTTTTCATTCCTCGCGTCTATTCTTGCCGTGGACAA TGGATCACCCCTCGGGTAATCCATATTAGGAAAGCACATCACATTTCTCC TAGTCGACCATTTGTAGTGTCCCTGGCATACTATCTGGTTTTGATTACGC ACGTCCACCTGAAAGCTCCCGCCATGGAGATTTTTTTTGAGGACAAGCAA ACAACCCTGAGTGTGTAACCATGGTAGCCACTCCAACACCACTTTGATCT CTTGATAGTATCGGCCGTACTGTTCCATATGTTCATCCTTGTGAATATCC TCAGGAGTGTTGTGTAGACATTAAGTGCTCATATAAAATCCGTTTTACTG TGCTTCATATTTCTTACCTTATATCTAAGCCCAACCCACACAATTCTCAC CAGAGCATTCAACACTAAAATGATTATGGACACCTGCACACACCACCATA GCACTCCACCAGAACCACCTGGTCAATTGGCCACCATTCATCCCACAACC TGAGAGCTCTTAATGCTACCACTCACCTTCCCGCTTTCTGCATAACTGAC TCATATTTCCCATACACAAACCCTATTGGGCCTTGAAAACCCCCAACTCC TGTGGTAAATGGCACAACAAAACGGGGGGGGGGGGGGTTAAATGCTCCAG AAACGTGGGTTGGCTTGTGAGCTAGATTTGATTGAAGGTTCAATGACTGT CAGGACCACTCGGAAGACACGTGACCCCTATGCCATCATCAAGGCAAGGG ATCTCATCAAGCTCCTG
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Coding sequence (CDS) from alignment at C-tenellus_contig10223:2976..4392+

>mRNA_C-tenellus_contig10223.1.2 ID=mRNA_C-tenellus_contig10223.1.2|Name=mRNA_C-tenellus_contig10223.1.2|organism=Choristocarpus tenellus KU2346|type=CDS|length=327bp|location=Sequence derived from alignment at C-tenellus_contig10223:2976..4392+ (Choristocarpus tenellus KU2346)
AAGAATCACAATAAATACCGACGAGACAAGCCTTGGGACAATGCCAATAT
CGACCACTGGGCCATCTCATCCTGGAAGGACGACGATATGAAGGTTAGCC
GCTTCCAGGATTCAAGTTTGCTCGAGGAGAGCAGCTTCGCTACTCTATTC
CCAAAGTACCGAGAGAAGTACCTACGAGAGGTGTGGCCAATTGTCACGAA
GGCCCTCGAGAAACGTGGGTTGGCTTGTGAGCTAGATTTGATTGAAGGTT
CAATGACTGTCAGGACCACTCGGAAGACACGTGACCCCTATGCCATCATC
AAGGCAAGGGATCTCATCAAGCTCCTG
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