mRNA_C-tenellus_contig10205.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10205.1.1
Unique NamemRNA_C-tenellus_contig10205.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig10205.1.1 vs. uniprot
Match: A0A6H5KC01_9PHAE (SUZ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC01_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 3.540e-30
Identity = 99/228 (43.42%), Postives = 124/228 (54.39%), Query Frame = 2
Query:  470 IDPALIDALDNAREYLLKLERELTEFVQAEGGPQ--RLELPPRSSYQRLIAYRLASRFKLQKASAGVHQIQAGSASSMPTAATTYPKEHRP---------------------TVFLKTSDSCVPGILLATLAAXXXXXXXXXXXXXXXXXXXXXXVASTSLANSKGRSSVIKLMRRSPGDPRAPALGRGGSGGAGSEAQMKTVADRAKEYAAARARIFGTASPPAPAP 1084
            +DPAL+DAL NAR+Y+LKLE EL  FV  +  P+   L LPPRSSYQRLIAYRLA+RFKLQKA+A   +    +A   P  ATT      P                     T F++ +DS VP +LL+ L A                        + ++A +  + + IKLMRR+PGDPRAP   +G  G  G E  +KTV  R +EYA ARARIFGT SPP P P
Sbjct:   93 VDPALMDALGNARDYVLKLEGELVAFVTTKEDPKPPHLVLPPRSSYQRLIAYRLAARFKLQKANAAQEREAIVAAGMDP--ATTIGVASPPXXXXXXXXXXXXXXXXXAQKVTAFVRVADSAVPAVLLSALDAEAKRREAAEAV-----------ATAMAVAATGSKGAPIKLMRRNPGDPRAPNPHQG-QGNGGLEKHVKTVEVREREYAEARARIFGTKSPPLPTP 306          
BLAST of mRNA_C-tenellus_contig10205.1.1 vs. uniprot
Match: D8LM72_ECTSI (R3H domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM72_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 3.720e-20
Identity = 81/193 (41.97%), Postives = 102/193 (52.85%), Query Frame = 2
Query:  470 IDPALIDALDNAREYLLKLERELTEFV--QAEGGPQRLELPPRSSYQRLIAYRLASRFKLQKASAGVHQIQAGSASSMPTAATTYPKEHRP--------------------TVFLKTSDSCVPGILLATLAAXXXXXXXXXXXXXXXXXXXXXXVASTSLANSKGRSSVIKLMRRSPGDPRAPALGRG-GSGG 979
            +D AL+DAL NAR+Y+LKLE EL  FV    E  P  L LPPRSSYQRLIAYRLA+RFKLQKA+A   +    +A   P  ATT      P                    T F++ +DS VP +LL+ L A                        +T++A +  + + IKLMRRSPGDPRAP   +G G+GG
Sbjct:  383 VDSALMDALGNARDYVLKLEGELVAFVTNMEEPKPPHLVLPPRSSYQRLIAYRLAARFKLQKANAAQEREAIVAAGMDP--ATTIGVASPPXXXXXXXXXXXXXXXXXQKVTAFVRVADSAVPAVLLSALDAEAKRREAAEAV-----------ATATAVAATGSKGAPIKLMRRSPGDPRAPNPHQGQGNGG 562          
BLAST of mRNA_C-tenellus_contig10205.1.1 vs. uniprot
Match: A0A7S2GQ35_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GQ35_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.610e-14
Identity = 75/210 (35.71%), Postives = 101/210 (48.10%), Query Frame = 2
Query:  455 GSEGSIDPALIDALDNAREYL--LKLERELTEFVQAEGGPQRLELPPRSSYQRLIAYRLASRFKLQKASAGVHQIQAGSASSMPTAATTYPKEHRPTVFLKTSDSCVPGILLATLAAXXXXXXXXXXXXXXXXXXXXXXVASTSLANSKGRSSV----IKLMRRSPGDPRAPALGRGGSGGAG--SEAQMKTVADRAKEYAAARARIFGT 1060
            G EG +DP L+DALDN R  L  LK E  +  F++A    ++L+ PP SSYQR+  +RLA RF L   S  V  +  G           Y +E R  +  KT  S +P +LL  L++                      V  T      G  +     +KLM+R P +      G G S G+G   + Q KTV++R K+YAAARARIFGT
Sbjct:   76 GVEGFVDPFLLDALDNPRNRLMILKFEDTIVNFMRA--PREQLDFPPLSSYQRMTLHRLAVRFNLAHQSVSVGPMVPG-----------YDRESRAIMLFKTPQSFIPEVLLINLSSKES-------------------VRPTGAGGVPGCVATPKKQVKLMKRDPANS-GGRRGGGHSNGSGRKDKNQAKTVSEREKDYAAARARIFGT 252          
BLAST of mRNA_C-tenellus_contig10205.1.1 vs. uniprot
Match: W7TB05_9STRA (SUZ domain protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TB05_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 6.120e-10
Identity = 68/212 (32.08%), Postives = 92/212 (43.40%), Query Frame = 2
Query:  461 EGSIDPALIDALDNAREYL--LKLERELTEFVQAEGGPQRLELPPRSSYQRLIAYRLASRFKLQKASAGVHQIQAGSASSMPTAATTYPKEHRPTVFLKTSDSCVPGILLATLAAXXXXXXXXXXXXXXXXXXXXXXVASTSLANSKGRSSVIKLM--RRSPGDPRAPALGRGGSGGAGSEAQMKTV------ADRAKEYAAARARIFGTAS 1066
            + +IDP L  A+DN RE +  L+ E  + +F++A    Q+LEL P SSY RL+ YRLA RF L  A+ G     AG               +R   F KT  S +P +LL                            +         ++ V++LM  RR+PG       G     G+G E    TV       DR K YA ARARIFG++S
Sbjct:   59 DAAIDPILTGAMDNPRERVNVLRYEDAMVQFMKAGTKQQQLELSPNSSYHRLVLYRLAHRFGLHGAAEGEVGADAGG--------------NRSVKFFKTPQSSIPHLLLIDTCGKEGVNG-----------------SGXXXXXXXAKAPVMRLMQRRRTPGGDSEAKEGAVRGKGSGEEKTSSTVNGARSVIDREKAYAEARARIFGSSS 239          
BLAST of mRNA_C-tenellus_contig10205.1.1 vs. uniprot
Match: K3WHI7_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WHI7_GLOUD)

HSP 1 Score: 72.0 bits (175), Expect = 9.000e-10
Identity = 73/217 (33.64%), Postives = 95/217 (43.78%), Query Frame = 2
Query:  422 AGAAAAVASATGSEGSIDPALIDALDNAREYL--LKLERELTEFVQAEGGPQRLELPPRSSYQRLIAYRLASRFKLQKASAGVHQI-QAGSASSMPTAATTYPKEHRPTVFLKTSDSCVPGILLATLAAXXXXXXXXXXXXXXXXXXXXXXVASTSLANSKGRSSVIKLMRRSPGDPRAPALGRGGSGGAGSEAQ--MKTVADRAKEYAAARARIFG 1057
            A  A+A ++  G    +DP L+  LDN RE L  LK E ++  F+++   PQ L  PP SSY RLI +RLA R  L+  +A  +   Q G                R     KTS S VP +LL  L+A                                  +S  K+M R  G  R  A   GG GG G +A+   +T+ DR K YA ARARIFG
Sbjct:   95 AATASAASALNGGGAPMDPVLVACLDNPRERLTVLKFEDQIVRFIRSSREPQ-LIFPPLSSYHRLIIHRLAERCCLEHQTADYNPYAQHGGYDG---------NSSRVVTLFKTSQSVVPSVLLIDLSADRQQPMVTP-------------------------ASAPKIMVRKRGTTRPGA--NGGRGGNGQDAKNAQRTMQDREKAYAEARARIFG 274          
BLAST of mRNA_C-tenellus_contig10205.1.1 vs. uniprot
Match: A0A662WIY5_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WIY5_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 2.630e-8
Identity = 69/214 (32.24%), Postives = 92/214 (42.99%), Query Frame = 2
Query:  425 GAAAAVASATGS-EGSIDPALIDALDNAREYL--LKLERELTEFVQAEGGPQRLELPPRSSYQRLIAYRLASRFKLQKASAGVHQIQAGSASSMPTAATTYPKEHRPTVFLKTSDSCVPGILLATLAAXXXXXXXXXXXXXXXXXXXXXXVASTSLANSKGRSSVIKLMRRSPGDPRAPALGRGGSGGAGSEAQMKTVADRAKEYAAARARIFG 1057
            GA + V  AT S  G +DP L+  L+N+RE L  LK E ++  F++    P  L  PP SSY RLI +RLA R  L+  +A  +  +  SA              R     KTS S VP +LL  L+                                   +S  K+M R  G  R  A G  G+G  G     +++ DR + YA ARARIFG
Sbjct:   74 GAGSPVGPATASAHGPLDPVLVAGLENSRERLTLLKFEDQIVRFLKNPREPH-LNFPPLSSYHRLIVHRLAQRCALEHQTADYNPYEGSSA--------------RVVTLFKTSQSAVPRVLLIDLSTDRQTPAVTP-------------------------ASAPKIMVRKRGAQRPGANGGRGNGADGRA--TRSMQDRERAYAEARARIFG 245          
BLAST of mRNA_C-tenellus_contig10205.1.1 vs. uniprot
Match: A0A662YFL1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YFL1_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.850e-7
Identity = 62/200 (31.00%), Postives = 84/200 (42.00%), Query Frame = 2
Query:  464 GSIDPALIDALDNAREYL--LKLERELTEFVQAEGGPQRLELPPRSSYQRLIAYRLASRFKLQKASAGVHQIQAGSASSMPTAATTYPKEHRPTVFLKTSDSCVPGILLATLAAXXXXXXXXXXXXXXXXXXXXXXVASTSLANSKGRSSVIKLMRRSPGDPRAPALGRGGSGGAGSEAQMKTVADRAKEYAAARARIFG 1057
            G +DP L+  L+N+RE L  LK E ++  F++    P  L  PP SSY RLI +RLA R  L+  +A  +  +  SA              R     KT  S VP +LL  L+                                   +S  K+M R  G  R  A G  G+G  G     +++ DR + YA ARARIFG
Sbjct:  157 GPLDPVLVAGLENSRERLTLLKFEDQIVRFLKNPREPH-LNFPPLSSYHRLIVHRLAQRCALEHQTADYNPYEGSSA--------------RVVTLFKTPQSAVPRVLLIDLSTDRQTPAVTP-------------------------ASAPKIMVRKRGAQRPGANGGRGNGADGRA--TRSMQDRERAYAEARARIFG 314          
BLAST of mRNA_C-tenellus_contig10205.1.1 vs. uniprot
Match: A0A485KN85_9STRA (Aste57867_9610 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KN85_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 2.000e-7
Identity = 64/210 (30.48%), Postives = 95/210 (45.24%), Query Frame = 2
Query:  470 IDPALIDALDNAREYL--LKLERELTEFVQAEGGPQRLELPPRSSYQRLIAYRLASRFKLQKASAGVHQIQAGSASSMPTAATTYPKEHRPTVFLKTSDSCVPGILLATLAAXXXXXXXXXXXXXXXXXXXXXXVASTSLANSKGRSSVI--KLMRRSPG------DPRAPALGRGGSGGAGSEAQMKTVADRAKEYAAARARIFGTASP 1069
            +DP L+ AL+N RE L  L+ E ++  F+++    + L  PP SSY RLI +RLA R  L+  ++      +    +  T A T           KT+ +CVP +LL  L+                        +S   A+S   S     K+M R P       + +APA          S+ + +T+ +R KEYAAARARIFG  +P
Sbjct:  103 LDPVLVAALENPRERLTLLQFEDQIVHFIRSSRDTE-LVFPPLSSYHRLIIHRLAERCVLEHQTSDFAAYNSMGYDTNTTRAVT---------LFKTAYTCVPSVLLINLSTE----------------------SSNPAASSAFSSHAAPPKIMTRKPNKNAAHKNQKAPA----------SDTKNRTIQEREKEYAAARARIFGEDAP 270          
BLAST of mRNA_C-tenellus_contig10205.1.1 vs. uniprot
Match: A0A5D6XMK8_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XMK8_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 3.300e-7
Identity = 70/214 (32.71%), Postives = 91/214 (42.52%), Query Frame = 2
Query:  422 AGAAAAVASATGSEGSIDPALIDALDNAREYL--LKLERELTEFVQAEGGPQRLELPPRSSYQRLIAYRLASRFKLQKASAGVHQIQAGSASSMPTAATTYPKEHRPTVFLKTSDSCVPGILLATLAAXXXXXXXXXXXXXXXXXXXXXXVASTSLANSKGRSSVIKLMRRSPGDPRAPALGRGGSGGAGSEAQMKTVADRAKEYAAARARIFG 1057
            A AA A  +  GS G +DP LI  L+N RE L  LK E ++  F++    PQ L  PP SSY RLI +RLA R  L+  +A   Q   G+A     A        R     KT  S VPG+LL  L+                         S     +   + V K+M R    PR  A G  G G A  +   +++ DR + YA     IFG
Sbjct:   59 ASAATAAHALDGSRGPLDPVLIACLENPRERLTLLKFEDQIVRFLKNPREPQ-LVFPPLSSYHRLIIHRLAERCCLEHQTADYGQYAPGAAYDGNAA--------RAVTLFKTGASVVPGVLLIDLS-------------------------SDRQQQTVTPAVVPKIMVRKRAAPRPGANGGRGPGDA--KNAQRSMQDRERAYAEXXXXIFG 236          
BLAST of mRNA_C-tenellus_contig10205.1.1 vs. uniprot
Match: A0A8K1FCI7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FCI7_PYTOL)

HSP 1 Score: 63.2 bits (152), Expect = 5.610e-7
Identity = 65/214 (30.37%), Postives = 94/214 (43.93%), Query Frame = 2
Query:  434 AAVASATGSEGSIDPALIDALDNAREYL--LKLERELTEFVQAEGGPQRLELPPRSSYQRLIAYRLASRFKLQKASAGVHQIQA----GSASSMPTAATTYPKEHRPTVFLKTSDSCVPGILLATLAAXXXXXXXXXXXXXXXXXXXXXXVASTSLANSKGRSSVIKLMRRSPGDPRAPALGRGGSGGAGSEAQMKTVADRAKEYAAARARIFG 1057
            AA  +A+   G +DP L+  L+N RE L  LK E ++  F++     Q L  PP SSY RLI +RLA R  L+  +   +   +    G+AS + T               KTS + +P +LL  L+A                            A +   +  I + +R+   P   A G  G GGA   A  +++ DR + YA ARARIFG
Sbjct:   96 AAATAASARFGPLDPVLLAGLENPRERLSVLKFEDQIVRFIKNPRENQ-LSFPPLSSYHRLIIHRLAERCCLEHQTGDYNPYSSQGYDGNASRVVT-------------LFKTSQTVIPRVLLIDLSAEKQQP-----------------------AVTPASAPKIMMRKRNTQHPGNGAAG--GRGGADGRATQRSIEDRERAYAEARARIFG 270          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10205.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5KC01_9PHAE3.540e-3043.42SUZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LM72_ECTSI3.720e-2041.97R3H domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S2GQ35_9STRA1.610e-1435.71Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
W7TB05_9STRA6.120e-1032.08SUZ domain protein n=2 Tax=Monodopsidaceae TaxID=4... [more]
K3WHI7_GLOUD9.000e-1033.64Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A662WIY5_9STRA2.630e-832.24Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A662YFL1_9STRA1.850e-731.00Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]
A0A485KN85_9STRA2.000e-730.48Aste57867_9610 protein n=1 Tax=Aphanomyces stellat... [more]
A0A5D6XMK8_9STRA3.300e-732.71Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A8K1FCI7_PYTOL5.610e-730.37Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10205contigC-tenellus_contig10205:1587..5542 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog65071.PYU1_T004429
PFAMsR3H,SUZ
Model size1407
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons5
Evalue9.44e-11
EggNOG OGsKOG2953@1|root,KOG2953@2759|Eukaryota,1MGQF@121069|Pythiales
Descriptionnucleic acid binding
Cds size1194
COG categoryA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10205.1.1prot_C-tenellus_contig10205.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10205 2110..5542 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789120.4486554-UTR-C-tenellus_contig10205:1586..17531680789120.4486554-UTR-C-tenellus_contig10205:1586..1753Choristocarpus tenellus KU2346UTRC-tenellus_contig10205 1587..1753 +
1680789120.459548-UTR-C-tenellus_contig10205:2065..21091680789120.459548-UTR-C-tenellus_contig10205:2065..2109Choristocarpus tenellus KU2346UTRC-tenellus_contig10205 2066..2109 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789120.4725373-CDS-C-tenellus_contig10205:2109..21541680789120.4725373-CDS-C-tenellus_contig10205:2109..2154Choristocarpus tenellus KU2346CDSC-tenellus_contig10205 2110..2154 +
1680789120.483317-CDS-C-tenellus_contig10205:2368..26211680789120.483317-CDS-C-tenellus_contig10205:2368..2621Choristocarpus tenellus KU2346CDSC-tenellus_contig10205 2369..2621 +
1680789120.4923594-CDS-C-tenellus_contig10205:3714..38641680789120.4923594-CDS-C-tenellus_contig10205:3714..3864Choristocarpus tenellus KU2346CDSC-tenellus_contig10205 3715..3864 +
1680789120.5073516-CDS-C-tenellus_contig10205:4796..55421680789120.5073516-CDS-C-tenellus_contig10205:4796..5542Choristocarpus tenellus KU2346CDSC-tenellus_contig10205 4797..5542 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10205.1.1

>prot_C-tenellus_contig10205.1.1 ID=prot_C-tenellus_contig10205.1.1|Name=mRNA_C-tenellus_contig10205.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=398bp
MAMEEWETAVATLEIDPGHKESNGTLSAEKPPSSLGEAGGGSTGGSGGVN
GMTEARVEDGGGREGTGVSRAGAAAAVASATGSEGSIDPALIDALDNARE
YLLKLERELTEFVQAEGGPQRLELPPRSSYQRLIAYRLASRFKLQKASAG
VHQIQAGSASSMPTAATTYPKEHRPTVFLKTSDSCVPGILLATLAAASQQ
REETAALRAAADASAAAAVASTSLANSKGRSSVIKLMRRSPGDPRAPALG
RGGSGGAGSEAQMKTVADRAKEYAAARARIFGTASPPAPAPAQGLAASTA
AASSGVESSETAAAVTSGGADVAGGGVGGTTGAVSVGGGEGGQAVNVDAS
LGAGSPVEGVPDGGVRDTSGSVDGKGSSGQEGGEGSISSAGAGGGGGQ
back to top

mRNA from alignment at C-tenellus_contig10205:1587..5542+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10205.1.1 ID=mRNA_C-tenellus_contig10205.1.1|Name=mRNA_C-tenellus_contig10205.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3956bp|location=Sequence derived from alignment at C-tenellus_contig10205:1587..5542+ (Choristocarpus tenellus KU2346)
AGGTATGCTAAAGCAAACCTGTATAGGCTCTGCAACACAAGGGGTGGCTT GGCGTGCGTGCTACTCATCCCCACGCTGACTTTGTGGGGTGCTATCCTTG GATTTCTTTTTGTCAAGGAACGATAAGCGTGACCATCACACAGAGAGGTA GATTACCTCTCAATCAGGCGAGTTTTATGGGGTTGGTATTCCTTCACCCT ACGACCCTTGGTTGCAACGAAGCCAGCGAATGCTGGCTCGGCTCAACCCC ACTCATACTCCTAGTTCAAGGTCTTCTCTAGTTTTAACTCCAGATGGTGT ACCTGTTTTAACGAAGAAGCTTTTCCGGTTTGATGACTCCCTGACCAGCG GCCTGAACGAGCAAGACACCTTCGCGTTTTGCTTTCTCCCTTGATCCCAA ACAGCCTGTTGATGTCAGAACCTCTACTTTTAACGAAACCTGTAAGTGCG TTGAAACTTCTCCCAAACACCATGTCCAGGCTACGATATCTGCAATTGAG GAGCTGTCGAAGTGGCACCATTCATGGCAATGGAGGAATGGGAAACAGCA GTGGCAACCCTGGAAATTGTGAGTCCACATTTGTCATGCACTTGGTTTCG TGTGAGATAAGGTCTGACATGTGGACGGGATAGTTTAGGGGTGCTATCGA TCTTCCCTCCACCTCCCTTGATCTGAACACCCCTTTTTGGACTTTCTAGT CATTTCTTTGCTTTCCCTCCTGTGGTAAACCAATTACATACACTCATCTG CTACCCCTAATACCAATCTTCGCACCACCAAGGACCCTGGCCATAAGGAG TCGAACGGAACGCTAAGTGCTGAGAAGCCGCCTTCGAGTCTTGGAGAGGC CGGTGGAGGTTCCACGGGTGGTAGCGGTGGCGTTAATGGAATGACCGAGG CGAGGGTGGAGGACGGAGGCGGCAGAGAGGGGACTGGAGTATCACGGGCT GGTGCAGCAGCAGCGGTAGCCAGTGCCACTGGGAGTGAAGGGTCAATAGA TCCTGCTCTAATAGATGCTCTTGACAATGCTCGAGGTTAGTTGACAAGGT CGTATTCCAACATGCTGATATGTGGATGGTAGAGGGTTCATTGGTTGTGA CCGTGGAAAGGGCTTTAGTACTTTTGGAGAAATGCACTTCTATCTTTTCT AGACCGCTGATTGACGAACTGGAAAAGAAAAGGTTGTGTAACACCTTTAA TCCTTTTTTATCCTTTCGCTTTTTTTAAATATTGGTGAGAAGAAATTACA GATTCAAATTACTCCAAAAAGTACGTAAGACAAGGTTGTGGAGTTAAAAC TGCCGCTGCAATTCCAGTAGAACCTTGCTAGTCTTGTCATGAAATGTTCA TCCTCCCTCTGCCCAGGCTGCCTCACTTTGCAGTGCAGTTGAAGTGCGTA CATGAAGATGTTAAGAAGCCCTTGGTACTACATCTGGAATGGGACAGATT TATGGATACTGCATTTCTACCTCGTTGATAGTGAGCAGTTAGCCAGCAAA CTGGCTCAGTAGAAACAGGAAATAGAAACAGGCTGCACTAGCTTGTGCGC TTGCCGGATAGAATCTTATTATATAGTGACAGTGGGCTAAAAGTGGAAGA GCTTATTTATTTTTTATTTGATGTGGTGAATATGAAGGCGTACCTGCAAA GTGTTTCAGATGGAGATATCAATAACCTATTTTTCTATGATAGAGGGGTG TGTTCCAAATGATTGCAAATCTCATCCAGCGCTTAAGAGGGTTGCTTAGG TGGTACTGAGTCAAGGTGAAAAATTAGTGCAAATTATGTGTTACAGGCTG GATTGTGCTCTAAGGCATAGTAGCATTGAGTTAAACCTATAGATAAGTTA TTGTGGACTAACATGCTGCAAAAATGCTGTGGTGATGCTCAAGAAAGACT TTTTAAAATTAAATTTTGAGTCTCTTGTTGATGCCCCCCAGCAAACTTGC TCTCTCACATCAGAAATTTTCTTGAAGTAAAGGGGTAATAAAATCTGCAC TACCACAGGATTGTGATGCAGTTGTTTTTTAACAACTGTACAATCTACAT TTGTAAAAGCACTCTCATTCTGCAGTGCCTGCCACCTGTGCCCCCCCACC CCCTTCTCTTCATTTCACAAAATTATAGAATACTTGCTAAAGCTAGAGAG GGAGTTGACTGAGTTTGTTCAGGCAGAAGGTGGGCCTCAACGGTTAGAAC TTCCTCCCCGATCTTCATACCAACGCCTGATTGCCTATCGCCTGGCATCG AGATTTAAGCTCCAGAAGGCCAGCGCAGGTTTGACTAGGGAGGGGTTGAT AGCAGGAGATTCTTGCTGGGATGGACAGGATCTGTTAGGTTGTAGGTGGT GATATTAGTGTGGTGTGGGGGTCTGAATATGTGTTATCTGCATCACTTGA TTTAGACATTCTGTTTATTCAATTCATTGAATGCTTGATAGAGGTGCATC AAAGTACTATAGTGCACTGTATCAACGTTACTACTGATAGACAAAAACAC AGAAATACTGCATACAAAATACTTCAACTGTTGTAATGTAAAGCGCTATA TTAACTTACTATTATTTTATCTTTCACATTTTATTTTTTTCTTCAACTAG GAACCTAGGTTAACCTGCAGTGAAGAGGCACTACACCCTGCATGTTTCAT GAACTAACTGTTGCACTGCAACTATTTGTGCTATCCCATGAATACTTTGC ACTCTTCCTTGTGTGTTGAGTTTAGACACCCCAGTCAGTGCTCATTGCTC CGCCTCCTCCCTTGAATCTTGTGCAATAATTGCCTCATTGCAATATAGCC TTGGTACCACGGTACAGGTGTACCTTTCTGATGTGCTTGCCACGTGGTCC ATCGAAATAAAATTTCACATGAACAAAAAGTCTTAACCTTGACCGGGCGT GAACCCTTCTGTTGCTATGGCAGAAGCTGATAGTTTTCCAAAGAGCTGTG AGGTATGGTACTTGGGTTTGAATTGAAGACTGCACACTGAGAAGGGCATG TTGTGTGTAACCAAGTTTGATGGGGGGCGGGCAAAGGGTATTGTGAGTAC ATCCGCATCTGCCGACAAGAATGTGTAATGCCTTGTACAATTCTTGCTTC GTGTCCAACTTTTCTTGTAATACATCCTATTTTTATTCTTTTAACCTTCC TCCCTAAAACCCTCTTATTGCCCTGTGCCACAATTGTTTGGTTTGCAATG ACATTATCAGGTGTGCACCAGATCCAGGCAGGATCGGCGTCATCAATGCC AACTGCAGCCACAACATACCCCAAGGAACATCGTCCAACTGTGTTCCTCA AGACATCTGATAGCTGTGTTCCTGGTATACTCCTGGCCACCCTCGCTGCT GCCTCCCAGCAAAGAGAAGAGACTGCTGCCCTTAGGGCTGCTGCTGATGC CTCGGCTGCTGCTGCAGTAGCCTCCACATCACTTGCCAACTCCAAGGGCA GGTCTTCTGTTATCAAGCTCATGAGAAGGAGCCCAGGCGACCCAAGGGCA CCTGCCCTCGGGCGAGGGGGGTCTGGAGGTGCAGGGTCTGAGGCGCAGAT GAAGACTGTTGCTGATCGGGCAAAAGAGTATGCGGCTGCAAGGGCAAGGA TCTTTGGGACAGCTAGTCCTCCGGCCCCCGCCCCTGCTCAAGGATTAGCT GCCTCTACGGCGGCAGCATCAAGCGGTGTTGAATCTTCAGAAACTGCAGC TGCTGTCACATCAGGAGGGGCAGATGTTGCAGGTGGAGGAGTGGGAGGGA CAACAGGGGCAGTCAGCGTTGGAGGTGGTGAGGGAGGGCAGGCAGTCAAT GTAGATGCATCATTGGGAGCGGGGAGTCCTGTGGAGGGAGTTCCAGATGG AGGTGTCAGGGACACCAGTGGCAGCGTTGATGGAAAAGGATCCTCAGGGC AAGAAGGGGGGGAAGGAAGCATAAGCAGTGCTGGGGCTGGTGGTGGGGGT GGTCAG
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig10205:1587..5542+

>mRNA_C-tenellus_contig10205.1.1 ID=mRNA_C-tenellus_contig10205.1.1|Name=mRNA_C-tenellus_contig10205.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1194bp|location=Sequence derived from alignment at C-tenellus_contig10205:1587..5542+ (Choristocarpus tenellus KU2346)
ATGGCAATGGAGGAATGGGAAACAGCAGTGGCAACCCTGGAAATTGACCC
TGGCCATAAGGAGTCGAACGGAACGCTAAGTGCTGAGAAGCCGCCTTCGA
GTCTTGGAGAGGCCGGTGGAGGTTCCACGGGTGGTAGCGGTGGCGTTAAT
GGAATGACCGAGGCGAGGGTGGAGGACGGAGGCGGCAGAGAGGGGACTGG
AGTATCACGGGCTGGTGCAGCAGCAGCGGTAGCCAGTGCCACTGGGAGTG
AAGGGTCAATAGATCCTGCTCTAATAGATGCTCTTGACAATGCTCGAGAA
TACTTGCTAAAGCTAGAGAGGGAGTTGACTGAGTTTGTTCAGGCAGAAGG
TGGGCCTCAACGGTTAGAACTTCCTCCCCGATCTTCATACCAACGCCTGA
TTGCCTATCGCCTGGCATCGAGATTTAAGCTCCAGAAGGCCAGCGCAGGT
GTGCACCAGATCCAGGCAGGATCGGCGTCATCAATGCCAACTGCAGCCAC
AACATACCCCAAGGAACATCGTCCAACTGTGTTCCTCAAGACATCTGATA
GCTGTGTTCCTGGTATACTCCTGGCCACCCTCGCTGCTGCCTCCCAGCAA
AGAGAAGAGACTGCTGCCCTTAGGGCTGCTGCTGATGCCTCGGCTGCTGC
TGCAGTAGCCTCCACATCACTTGCCAACTCCAAGGGCAGGTCTTCTGTTA
TCAAGCTCATGAGAAGGAGCCCAGGCGACCCAAGGGCACCTGCCCTCGGG
CGAGGGGGGTCTGGAGGTGCAGGGTCTGAGGCGCAGATGAAGACTGTTGC
TGATCGGGCAAAAGAGTATGCGGCTGCAAGGGCAAGGATCTTTGGGACAG
CTAGTCCTCCGGCCCCCGCCCCTGCTCAAGGATTAGCTGCCTCTACGGCG
GCAGCATCAAGCGGTGTTGAATCTTCAGAAACTGCAGCTGCTGTCACATC
AGGAGGGGCAGATGTTGCAGGTGGAGGAGTGGGAGGGACAACAGGGGCAG
TCAGCGTTGGAGGTGGTGAGGGAGGGCAGGCAGTCAATGTAGATGCATCA
TTGGGAGCGGGGAGTCCTGTGGAGGGAGTTCCAGATGGAGGTGTCAGGGA
CACCAGTGGCAGCGTTGATGGAAAAGGATCCTCAGGGCAAGAAGGGGGGG
AAGGAAGCATAAGCAGTGCTGGGGCTGGTGGTGGGGGTGGTCAG
back to top