mRNA_C-tenellus_contig10178.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10178.1.1
Unique NamemRNA_C-tenellus_contig10178.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10178.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10178contigC-tenellus_contig10178:1924..4608 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size289
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_001540.1
Cds size288
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789119.3462918-CDS-C-tenellus_contig10178:1923..20061680789119.3462918-CDS-C-tenellus_contig10178:1923..2006Choristocarpus tenellus KU2346CDSC-tenellus_contig10178 1924..2006 +
1680789119.3562295-CDS-C-tenellus_contig10178:3980..40591680789119.3562295-CDS-C-tenellus_contig10178:3980..4059Choristocarpus tenellus KU2346CDSC-tenellus_contig10178 3981..4059 +
1680789119.364814-CDS-C-tenellus_contig10178:4481..46071680789119.364814-CDS-C-tenellus_contig10178:4481..4607Choristocarpus tenellus KU2346CDSC-tenellus_contig10178 4482..4607 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10178.1.1prot_C-tenellus_contig10178.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10178 1924..4607 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10178.1.1

>prot_C-tenellus_contig10178.1.1 ID=prot_C-tenellus_contig10178.1.1|Name=mRNA_C-tenellus_contig10178.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=96bp
EGHVAAVKKEEDRLKDLLGNSDESCFLRALPGVMGDVEQVLEDSARLVGM
PLPKASHLSQEDFPLGRLHNLTIAPKRSGARSRASPESLGEGHYQG
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mRNA from alignment at C-tenellus_contig10178:1924..4608+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10178.1.1 ID=mRNA_C-tenellus_contig10178.1.1|Name=mRNA_C-tenellus_contig10178.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2685bp|location=Sequence derived from alignment at C-tenellus_contig10178:1924..4608+ (Choristocarpus tenellus KU2346)
GAAGGACATGTTGCTGCTGTCAAGAAAGAAGAGGACCGATTGAAAGATCT
CCTTGGAAATTCTGATGAGAGCTGTTTCCTTCGGTGAGGGTATGCCTGTA
GCAACGGAAAATGAAGATATGCTTCCATTCCATTCTTTGATGCATGTGTA
TGTGGAGGAGGGTGTGTAGATTGAATGCCTGGAGGGTGCTGGAGATCACA
TCACTATCTCTTGATGATGCTTCCAATTGCTGTTTGCGAGAGCCTGTTTT
TGTCGAGATACAATGTTGTTGAGTTTGCTCGAACATACGCAAAGATAGTG
GCAAGGAGAAGCTATACTAACCAGGGGAATAGCCTAACCACAGATAGATG
TGACTGCAGCAATTGATGTTGAATGTATTCAAGCGACCATGGTGGGCACA
ATAGTTTTTTATGGTCCGTAGCTTTTTTTTTAATACCAGACACGCTTTCG
AAGTAATATATACTGTGCTTTTTTTTTTTCAACACCCTTGCTACAGGTCT
TCATGACTAGAACATAACATACGTGGCTTGTATTTGAGATCATAAGAAAT
GTTCTCTTTTTGTGGCATTAGGACACCCTAGTTGATACTTGCCGTACATG
ATGAGGGGACCCCAGGATGTCTCTTCCCTCTTACATAGCCCATGTGTTAG
TCCAGAACAAAACAGTACACCCAACTGAGCTTCTCCAATAGGTCGCATAG
AACGGTCGATGTTGAAGGTCCCATCTGCCCCTACCCCCTGTTGTGTCCTG
GTGTGCTAACTAGTCACAATTGAATTACAGCACAATGTCTTCATTTGGGG
TGTTGTGACATCTGTACCTTTATGTGGTACGTGTGCAAGGTCTTCCACAA
CCCTCCCTCATCTCCGCAGTCACTAGGGTTCTTTACTCATGCCTGAAATG
ACTATACACTATGCAATACGCTGTACGCTCCAGTTTTTATTATTTCTTGG
GCAGGTTAGAAGTAGGGTTAGCATTTTGGACAGCATGGTGCAAACGAGGG
TTCTCTCTGCAGTACATGTACTGTTGAAGTGTTCATGCAGTGGAGCGCGT
TACTTGACACCCATGCAGCGTTCGATATCACAACCGATAGCTCAGAATGG
CTTGACGCTGGTATCACTTTTTCTGCTGTGTACATGTATGTTCTGTCGAA
GTGGCACACGCCTTAGTCTCGCCCTTGCGCTCACCAGCATCTTACAATGC
GGTTTATGTTTAGATGTTGGGGTACACAAGGTGACCCGAGCAAGAAATCA
AAGAAACCGTTGTTGAGTGCGCGCAATGTGGAACTGCTTCTTCTGTCCGT
GATAAGGGTGGGGCATTGCACCACTCCTGTCATCTGCTAATTTCTACATC
TTCCGTGCTGCATATGATGGAAGATTTCGATAGCACGCATGGAACTGCTT
GTACCATCAGTCCGTGGTAAAAAGAGATAATGTGCAATGACATTCCACTC
CGACAATTGCTGATTTGTTGGTTGGGGGGGGTACAGTATGGCCAAGAAGG
AAGCGGTTGGTGGTGTACGTGTGGAATTGCTTGCACCATCCACGATAGGT
GCATATACCGTAATACGACTGCACCGACTGTCAATTTCTTTGTCTGGCGG
AAGGCGTGTTGTGTACCTCAGAGTCGGAGTGTTATTTTTTTATTGCTACT
GTACATTGCGCGTACAACTAATGTGTGATCCGAGAGCGAGATTTTTTTCG
AAGAGAATTGATTTGAGCCATTTTGTGGTGTAGTATTGCTGTTTGTTGTT
GAGGCCTGCCTCGCTACACAAGAGAGGGACTGTAGAGCGGTTGTATTTGG
TGGGTTTGAAGTGTTGGGGTAGGGTCATGCTTTTTTATCTGTAGTATCAA
TGTATGTCAGAGTATAGTTGTATCAGAAAAGTGCTCTTCTTTGGAAATGC
AAAGTGGCTCAGGTGACACAAAGAAAGAACACACACACACACACGAACAC
ACACTACCAAACCCCCTGTGCATACAATGCTGACAGAGTAGTCCTTCTCC
CTCCTCCCATCCACTGACACCCTCTCTCACACATGCCTACACTCATATCG
GTGGCAGGGCATTGCCAGGGGTAATGGGTGACGTTGAGCAAGTTTTGGAG
GATAGTGCAAGACTGGTCGGGATGCCTCTTCCCAAGGTGACACACTGACA
CTCCTTGATAGCCTTATGTACCTGGACTCTTGAAGCTGTGCGAGCTTGCA
TGATTTTGTGGTGGTCGATTTTATCCCCCCTTGATACCACCATTGAAGAC
ATTTTTTTGTACCAATTCTGCCGTCAGTATTGTATGTCACATTTGATGCA
CTACCCAGTAATGCATCGTTTATTTTTAAAAAAAATCGGTCAGTGCCTGA
ACCTGAAAATCTCTCCTGCCTTACAGACACCACGTGACTATTTCTATTTT
GTATGGACCAGAGCATGAAGTGGCTTATTAATCTTGGCACTATTCCTCCC
CATCCCCCTCCCCCGACTGTAAAGACATCCTTGACCAGTTGCTACACTCT
GGAAGACCCCTCACCTTACCATGGATCCCCCACCTCACTGGTAAAAACTT
CCTTACAGGCAAGTCACCTAAGTCAAGAGGACTTTCCCCTCGGCCGTCTC
CATAACCTCACCATTGCTCCTAAGAGATCTGGTGCCAGGAGTAGGGCCTC
ACCAGAAAGCTTGGGGGAGGGGCACTATCAGGGGC
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Coding sequence (CDS) from alignment at C-tenellus_contig10178:1924..4608+

>mRNA_C-tenellus_contig10178.1.1 ID=mRNA_C-tenellus_contig10178.1.1|Name=mRNA_C-tenellus_contig10178.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=288bp|location=Sequence derived from alignment at C-tenellus_contig10178:1924..4608+ (Choristocarpus tenellus KU2346)
GAAGGACATGTTGCTGCTGTCAAGAAAGAAGAGGACCGATTGAAAGATCT
CCTTGGAAATTCTGATGAGAGCTGTTTCCTTCGGGCATTGCCAGGGGTAA
TGGGTGACGTTGAGCAAGTTTTGGAGGATAGTGCAAGACTGGTCGGGATG
CCTCTTCCCAAGGCAAGTCACCTAAGTCAAGAGGACTTTCCCCTCGGCCG
TCTCCATAACCTCACCATTGCTCCTAAGAGATCTGGTGCCAGGAGTAGGG
CCTCACCAGAAAGCTTGGGGGAGGGGCACTATCAGGGG
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