mRNA_C-tenellus_contig10177.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10177.2.1
Unique NamemRNA_C-tenellus_contig10177.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig10177.2.1 vs. uniprot
Match: D7FUN3_ECTSI (Arsenite translocating ATPase like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUN3_ECTSI)

HSP 1 Score: 187 bits (474), Expect = 2.850e-54
Identity = 102/144 (70.83%), Postives = 122/144 (84.72%), Query Frame = 1
Query:    1 ARKNRPVGSRSL--VASATVVE---TSTGLNELLQSRNGVSQRFVFFGGKGGVGKTSTAASVAIQCADAGLRTLVISTDPAHSLGDALDQNVSGGKPVRVTGMDNLEAMEVDTEEAVKEFETALKAFDVTALATEMGISQDMVE 417
            AR +R  G RSL  VA+   +E   ++ GL ELL++RNGV++RFVFFGGKGGVGKTSTAA+VAIQCADAGLRTLVISTDPAHSLGDALDQ+VSGG+PVR+ G+DNL AMEVDT EAVKEFE AL +FD++ +A EMG+ +DMVE
Sbjct:  101 ARSSRSGGVRSLKSVAAPAGLEKGVSARGLGELLEARNGVNERFVFFGGKGGVGKTSTAAAVAIQCADAGLRTLVISTDPAHSLGDALDQDVSGGEPVRIIGLDNLSAMEVDTVEAVKEFEEALSSFDISGMAEEMGVPKDMVE 244          
BLAST of mRNA_C-tenellus_contig10177.2.1 vs. uniprot
Match: A0A7S3T6P5_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3T6P5_9SPIT)

HSP 1 Score: 125 bits (315), Expect = 1.820e-34
Identity = 65/109 (59.63%), Postives = 83/109 (76.15%), Query Frame = 1
Query:   40 ASATVVETSTGLNELLQSRNGVSQRFVFFGGKGGVGKTSTAASVAIQCADAGLRTLVISTDPAHSLGDALDQNVSGGKPVRVTGMDNLEAMEVDTEEAVKEFETALKAF 366
            ASA V   + G    L S  G +QR +F GGKGGVGKT+T++++A++CADAGLRTL++STDPAHSLGDAL Q++SGGK V + G +NL AMEVDTE+AVK F  A+  F
Sbjct:   18 ASAHVAPPAVGPLSRLLSTEGSTQRLIFVGGKGGVGKTTTSSAIAVRCADAGLRTLIVSTDPAHSLGDALMQDLSGGKAVDIIGCENLSAMEVDTEDAVKRFRAAVSGF 126          
BLAST of mRNA_C-tenellus_contig10177.2.1 vs. uniprot
Match: A0A4D9DG36_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DG36_9STRA)

HSP 1 Score: 133 bits (335), Expect = 1.880e-33
Identity = 73/144 (50.69%), Postives = 94/144 (65.28%), Query Frame = 1
Query:    4 RKNRPVGSRSLVASATVVETSTGLNELLQS-------RNGVSQRFVFFGGKGGVGKTSTAASVAIQCADAGLRTLVISTDPAHSLGDALDQNVSGGKPVRVTGMDNLEAMEVDTEEAVKEFETALKAFDVTALATEMGISQDMV 414
            R  +   SR  VAS     +S  L             + G++QRF+FFGGKGGVGKTST+ ++A+  AD GL+TL+ISTDPAHSLGD L+Q VSGG PVRV G DNL AMEVDT  A+  F    K  DV+ALA + G+S++++
Sbjct:   64 RMRQERASRMAVASTATQSSSPSLTXXXXXXXXXXTRKTGLTQRFIFFGGKGGVGKTSTSTAIAVHLADKGLKTLIISTDPAHSLGDLLEQKVSGGDPVRVEGCDNLWAMEVDTTRALDRFRALFKELDVSALAAQFGVSEEIL 207          
BLAST of mRNA_C-tenellus_contig10177.2.1 vs. uniprot
Match: A0A7R9U218_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U218_9STRA)

HSP 1 Score: 116 bits (291), Expect = 1.600e-27
Identity = 62/105 (59.05%), Postives = 77/105 (73.33%), Query Frame = 1
Query:  100 GVSQRFVFFGGKGGVGKTSTAASVAIQCADAGLRTLVISTDPAHSLGDALDQNVSGGKPVRVTGMDNLEAMEVDTEEAVKEFETALKAFDVTALATEMGISQDMV 414
            G  Q+ VF GGKGGVGKTSTAA++ +  AD GL TLV+STDPAHSLGDAL Q+V GG  V V G  NL A+EVD E AV+EF+ AL+A D   +A  +G+ +D+V
Sbjct:    7 GGQQQLVFLGGKGGVGKTSTAAALGVTMADRGLSTLVLSTDPAHSLGDALGQDVGGGDAVLVQGTTNLYALEVDGERAVREFQEALEALDAKKIAVTLGLPEDVV 111          
BLAST of mRNA_C-tenellus_contig10177.2.1 vs. uniprot
Match: A0A7S0HAT0_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0HAT0_9EUKA)

HSP 1 Score: 113 bits (283), Expect = 2.300e-27
Identity = 59/101 (58.42%), Postives = 79/101 (78.22%), Query Frame = 1
Query:  112 RFVFFGGKGGVGKTSTAASVAIQCADAGLRTLVISTDPAHSLGDALDQNVSGGKPVRVTGMDNLEAMEVDTEEAVKEFETALKAFDVTALATEMGISQDMV 414
            RFVF GGKGGVGKTST++S+A++ AD+GL TL++STDPAHSL DAL Q+V GGKPV V G++ LEAMEV TEEA + F +A+  F  + L    G+++++V
Sbjct:  169 RFVFVGGKGGVGKTSTSSSIAVRLADSGLSTLIVSTDPAHSLSDALMQDVGGGKPVVVNGVEGLEAMEVSTEEAAERFRSAIGGFRASDLGLG-GVAEELV 268          
BLAST of mRNA_C-tenellus_contig10177.2.1 vs. uniprot
Match: A0A8J6C886_DIALT (Uncharacterized protein n=4 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C886_DIALT)

HSP 1 Score: 115 bits (289), Expect = 3.060e-27
Identity = 58/90 (64.44%), Postives = 73/90 (81.11%), Query Frame = 1
Query:   97 NGVSQRFVFFGGKGGVGKTSTAASVAIQCADAGLRTLVISTDPAHSLGDALDQNVSGGKPVRVTGMDNLEAMEVDTEEAVKEFETALKAF 366
            +G +QRFV  GGKGGVGKTSTA+++AI+CA +GLRTLV STDPAHSLGDAL  +++GGKPV V G+D L+A+E+D  EA+  F  AL AF
Sbjct:   64 SGAAQRFVLVGGKGGVGKTSTASALAIRCAQSGLRTLVASTDPAHSLGDALQLDLAGGKPVAVPGLDGLDALEIDPSEAIGRFRAALAAF 153          
BLAST of mRNA_C-tenellus_contig10177.2.1 vs. uniprot
Match: A0A0G4FEQ3_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FEQ3_VITBC)

HSP 1 Score: 111 bits (278), Expect = 9.220e-26
Identity = 64/121 (52.89%), Postives = 85/121 (70.25%), Query Frame = 1
Query:   64 STGLNELLQSRNG-VSQRFVFFGGKGGVGKTSTAASVAIQCADAGLRTLVISTDPAHSLGDALDQNVSG--GKPVRVTGMDNLEAMEVDTEEAVKEFETALKAFDVTALATEMGISQDMVE 417
            S+ LN+LLQ+  G  S R + FGGKGGVGKT+TAA+ A++ AD GLRTL+ISTDPAHSLGDAL Q +     +   V G+DNL A+EVD  +AV E + AL+ FD   L+ ++GI   ++E
Sbjct:   59 SSSLNDLLQAPGGSTSTRLILFGGKGGVGKTTTAAATAVRFADEGLRTLIISTDPAHSLGDALGQQLHAPPDEMTAVEGVDNLWALEVDAGQAVIEMKAALETFDAIELSRKLGIGTTVLE 179          
BLAST of mRNA_C-tenellus_contig10177.2.1 vs. uniprot
Match: A0A0G4GDI4_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GDI4_9ALVE)

HSP 1 Score: 110 bits (276), Expect = 1.710e-25
Identity = 68/137 (49.64%), Postives = 89/137 (64.96%), Query Frame = 1
Query:   43 SATVVETSTGLNELLQSRNGVSQRFVFFGGKGGVGKTSTAASVAIQCADAGLRTLVISTDPAHSLGDALDQNVSGGK------------PVRVTGMDNLEAMEVDTEEAVKEFETALKAFDVTALATEMGISQDMVE 417
            SA++ + S G ++LL S  G  Q+ V FGGKGGVGKT++AA+ A+Q ADAG RTLV+STDPAHSLGDAL Q++   K            PV V+G  NL A+EVD   AV+EF  ALK  D+  +A ++GI    +E
Sbjct:    2 SASLADGS-GFSDLL-SPKGAGQKIVLFGGKGGVGKTTSAAAAAVQLADAGFRTLVVSTDPAHSLGDALGQDIMYAKGAAEETGELSAAPVAVSGCANLWALEVDASGAVREFRDALKKIDLNDMAEKLGIDPSTLE 136          
BLAST of mRNA_C-tenellus_contig10177.2.1 vs. uniprot
Match: A0A7S0NW41_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NW41_9EUKA)

HSP 1 Score: 108 bits (271), Expect = 7.040e-25
Identity = 63/121 (52.07%), Postives = 84/121 (69.42%), Query Frame = 1
Query:    4 RKNRPVGSRSLVASATVVETSTGLNELLQSRNGVSQRFVFFGGKGGVGKTSTAASVAIQCADAGLRTLVISTDPAHSLGDALDQNVSGGKPVRVTGMDNLEAMEVDTEEAVKEFETALKAF 366
            R + P+    +VA AT       L +LL+ R+   QR +F GGKGGVGKTST++++A++CAD GL TL++STDPAHSL DAL Q+VSGG PV V G   L AMEV+T++AV+ F  A+  F
Sbjct:   21 RLHAPMMCAPMVAPAT-----RPLAQLLE-RDSTQQRLIFVGGKGGVGKTSTSSAIALRCADKGLSTLIVSTDPAHSLSDALVQDVSGGSPVLVMGCMGLSAMEVETDKAVERFREAVGGF 135          
BLAST of mRNA_C-tenellus_contig10177.2.1 vs. uniprot
Match: R1FYY7_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FYY7_EMIHU)

HSP 1 Score: 107 bits (266), Expect = 3.600e-24
Identity = 60/115 (52.17%), Postives = 81/115 (70.43%), Query Frame = 1
Query:   82 LLQSRNGVSQRFVFFGGKGGVGKTSTAASVAIQCADAGLRTLVISTDPAHSLGDALDQNVSGGKPVRVTGMDNLEAMEVDTEEAVKEFETALKAFDVTALATEMGISQDMVEVGG 426
            +LQS  G +QR +  GGKGGVGKTS+++++A++ AD GL TL++STDPAHSL DAL Q+VSGG PV V G +NL+AMEV+T +AV  F  A+  F     A ++G+     EV G
Sbjct:    1 MLQS--GAAQRLILVGGKGGVGKTSSSSAIAVRLADTGLSTLIVSTDPAHSLSDALMQDVSGGSPVGVAGCENLQAMEVETADAVDRFRAAVSGFR----AADLGLGGLAEEVLG 109          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10177.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUN3_ECTSI2.850e-5470.83Arsenite translocating ATPase like protein n=1 Tax... [more]
A0A7S3T6P5_9SPIT1.820e-3459.63Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
A0A4D9DG36_9STRA1.880e-3350.69Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7R9U218_9STRA1.600e-2759.05Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S0HAT0_9EUKA2.300e-2758.42Hypothetical protein (Fragment) n=1 Tax=Phaeocysti... [more]
A0A8J6C886_DIALT3.060e-2764.44Uncharacterized protein n=4 Tax=Diacronema lutheri... [more]
A0A0G4FEQ3_VITBC9.220e-2652.89Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A0G4GDI4_9ALVE1.710e-2549.64Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A7S0NW41_9EUKA7.040e-2552.07Hypothetical protein (Fragment) n=1 Tax=Calcidiscu... [more]
R1FYY7_EMIHU3.600e-2452.17Uncharacterized protein n=2 Tax=Emiliania huxleyi ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10177contigC-tenellus_contig10177:4041..5439 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FUN3
PFAMsArsA_ATPase
Model size432
Max annot lvl2759|Eukaryota
KEGG koko:K01551
KEGG TC3.A.19.1,3.A.21.1,3.A.4.1
Hectar predicted targeting categoryother localisation
Exons3
Evalue4.67e-55
EggNOG OGsCOG0003@1|root,KOG2825@2759|Eukaryota
EC3.6.3.16
DescriptionATPase activity
Cds size432
COG categoryP
BRITEko00000,ko01000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789119.2841396-CDS-C-tenellus_contig10177:4040..42401680789119.2841396-CDS-C-tenellus_contig10177:4040..4240Choristocarpus tenellus KU2346CDSC-tenellus_contig10177 4041..4240 +
1680789119.2977529-CDS-C-tenellus_contig10177:4661..47761680789119.2977529-CDS-C-tenellus_contig10177:4661..4776Choristocarpus tenellus KU2346CDSC-tenellus_contig10177 4662..4776 +
1680789119.3055468-CDS-C-tenellus_contig10177:5322..54391680789119.3055468-CDS-C-tenellus_contig10177:5322..5439Choristocarpus tenellus KU2346CDSC-tenellus_contig10177 5323..5439 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10177.2.1prot_C-tenellus_contig10177.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10177 4041..5439 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10177.2.1

>prot_C-tenellus_contig10177.2.1 ID=prot_C-tenellus_contig10177.2.1|Name=mRNA_C-tenellus_contig10177.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=144bp
ARKNRPVGSRSLVASATVVETSTGLNELLQSRNGVSQRFVFFGGKGGVGK
TSTAASVAIQCADAGLRTLVISTDPAHSLGDALDQNVSGGKPVRVTGMDN
LEAMEVDTEEAVKEFETALKAFDVTALATEMGISQDMVEVGGW*
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mRNA from alignment at C-tenellus_contig10177:4041..5439+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10177.2.1 ID=mRNA_C-tenellus_contig10177.2.1|Name=mRNA_C-tenellus_contig10177.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1399bp|location=Sequence derived from alignment at C-tenellus_contig10177:4041..5439+ (Choristocarpus tenellus KU2346)
GCCCGGAAGAATCGACCTGTGGGCTCCCGATCTCTAGTTGCCAGTGCTAC AGTCGTTGAGACCTCGACCGGATTGAATGAGCTGTTGCAGTCACGCAACG GTGTGAGCCAACGTTTCGTATTCTTCGGTGGTAAAGGTGGTGTGGGGAAG ACATCAACCGCTGCTTCGGTGGCTATACAGTGTGCAGATGCTGGATTGAG GTGTGGTATCTGTCTAATTTCTTCTCTTCCATGCTTGCTATCGTCGTTCT GCCCCCCTAATGTTCGAGGTTTTTGGAGTTGAAGTATCGCCATGACGCCC GCCGTATCATTCTTATTACACCAAGAGGATATTTTCACATTATCACGGTA GGATAATCATGGTCCTTCCTGTTGGGTGGTGCTTTAGAGCGAGTAGCACT GGATCCTTGAACTTCTGATCGACCACGTCGCGAGTCTCTTCTTTGTGATT CCACATCGGGACCAACGATTATTTCTATCAAGTTTGCGTTGCCACATAAC CACGCAAGCATGGCACGCCAAGATGCACCCTCGTGCCTTTAGCCATCCAT CATGATACACTTGTTTCCTCTTGCCTGGGCCCCATTGTGCCCATATCAAT ATCTCTTTACATTGGTGGCAGAACTCTGGTGATCAGCACAGACCCGGCTC ACTCCCTTGGCGATGCACTTGACCAGAATGTGTCGGGAGGAAAACCTGTG CGAGTCACAGGGATGGACAACCTAGAAGCTATGGAGGTAGCGGAATTTGT TGCAGGAGAACGTTTAAGAGGAATGAATGCCTTCGTCCAATATTGGAAAT TGTTTTGACCGAACAATGTATTGCTCCATTCACTGGTGGATGCCTGTCAC CAGGAGTCTGAAGCTGGACAGCAGAGCAACTAGGGCATTCAAGTACTCTT TTGTCCCTGTTTTCTCTGGTGTGCTTTTCTTACCTGCAGGCAGATCCCTC TCCAGAGTGTTTTAACCCTTGTGCAAGCTGCTGCATTTGTAGATTACTAG ATTTCTGCGGGTGTTGGGATGCAAGATGTTTCGAATGGATGTCTTGCACG TGCATGGTGTGTGTACGTTGTTTGGGGGTGTTTGGGTGGGTGTGAATGAG GAGTGGTAGGAGTGTGGAAAAGCCCACAATGCTTTACAGCTCATGTGCAT AAGAATGTATTACCCACTTTAAATGTTGGCACTCATTCACGCCCTACACG GTTATGAAGTGCAGACTTGTTGGAGACGTTTTTTGACGAGCTGGCCTTTC GTGCTCTTGTCTGTGTGCTTCCTCTCGGTCAGGTAGATACAGAAGAGGCT GTCAAAGAGTTTGAGACTGCGCTGAAGGCGTTTGATGTGACTGCCTTGGC CACGGAGATGGGAATATCTCAGGACATGGTAGAGGTGGGTGGTTGGTGA
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Coding sequence (CDS) from alignment at C-tenellus_contig10177:4041..5439+

>mRNA_C-tenellus_contig10177.2.1 ID=mRNA_C-tenellus_contig10177.2.1|Name=mRNA_C-tenellus_contig10177.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=432bp|location=Sequence derived from alignment at C-tenellus_contig10177:4041..5439+ (Choristocarpus tenellus KU2346)
GCCCGGAAGAATCGACCTGTGGGCTCCCGATCTCTAGTTGCCAGTGCTAC
AGTCGTTGAGACCTCGACCGGATTGAATGAGCTGTTGCAGTCACGCAACG
GTGTGAGCCAACGTTTCGTATTCTTCGGTGGTAAAGGTGGTGTGGGGAAG
ACATCAACCGCTGCTTCGGTGGCTATACAGTGTGCAGATGCTGGATTGAG
AACTCTGGTGATCAGCACAGACCCGGCTCACTCCCTTGGCGATGCACTTG
ACCAGAATGTGTCGGGAGGAAAACCTGTGCGAGTCACAGGGATGGACAAC
CTAGAAGCTATGGAGGTAGATACAGAAGAGGCTGTCAAAGAGTTTGAGAC
TGCGCTGAAGGCGTTTGATGTGACTGCCTTGGCCACGGAGATGGGAATAT
CTCAGGACATGGTAGAGGTGGGTGGTTGGTGA
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