mRNA_C-tenellus_contig10174.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10174.1.1
Unique NamemRNA_C-tenellus_contig10174.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10174.1.1 vs. uniprot
Match: D8LQ31_ECTSI (PCI domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ31_ECTSI)

HSP 1 Score: 189 bits (479), Expect = 6.200e-54
Identity = 95/174 (54.60%), Postives = 124/174 (71.26%), Query Frame = 2 
Query:    2 LDRYLRALDDAIRTKDGVAIGRCFSADRVDVPYSQDFVPWLNERSIDRQCEKNLPEDVAVVAGGVLRSLSATHDRKAEEAHKYYLTALESFLDRLYIPGGTWLAPCLYLMVAGVRKLAKQADWGSRDGTSSMSKAVLSYGDTEVEEANSKCMVVTTHIIMKAFRISINDRSNEP 523
            L+RYL+ L+ A R+ DG  + R  SA   D   S   V +L+ER I+++C + L   +A VA GVLRS  A+H+ +A++AHK+Y+ ALESFLD +Y+P G W+APCLY MVAGVRKLAK+ADWG  DG  +   A  SYG+ E EE  SK MV+TTH IM+AFR+SINDRSN+P
Sbjct:    3 LERYLKTLNTAFRSHDGSTMARLLSASAADSS-SSGVVAYLDEREIEKECPRRLKGALATVAAGVLRSWHASHEGRADDAHKHYIAALESFLDGIYVPEGIWVAPCLYGMVAGVRKLAKKADWGGPDGRKA---AAPSYGEAEAEEEGSKSMVLTTHTIMRAFRLSINDRSNDP 172
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10174.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQ31_ECTSI6.200e-5454.60PCI domain-containing protein n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10174contigC-tenellus_contig10174:2424..5552 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LQ31
PFAMsPCI
Model size806
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons5
Evalue2.55e-18
EggNOG OGsCOG5600@1|root,KOG2688@2759|Eukaryota
Descriptionposttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery
Cds size234
COG categoryL
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10174.1.1prot_C-tenellus_contig10174.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10174 3020..5308 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789119.042345-UTR-C-tenellus_contig10174:2423..25531680789119.042345-UTR-C-tenellus_contig10174:2423..2553Choristocarpus tenellus KU2346UTRC-tenellus_contig10174 2424..2553 +
1680789119.0526469-UTR-C-tenellus_contig10174:2653..27901680789119.0526469-UTR-C-tenellus_contig10174:2653..2790Choristocarpus tenellus KU2346UTRC-tenellus_contig10174 2654..2790 +
1680789119.0613394-UTR-C-tenellus_contig10174:2958..30191680789119.0613394-UTR-C-tenellus_contig10174:2958..3019Choristocarpus tenellus KU2346UTRC-tenellus_contig10174 2959..3019 +
1680789119.218585-UTR-C-tenellus_contig10174:5308..55521680789119.218585-UTR-C-tenellus_contig10174:5308..5552Choristocarpus tenellus KU2346UTRC-tenellus_contig10174 5309..5552 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789119.1736057-CDS-C-tenellus_contig10174:3019..30521680789119.1736057-CDS-C-tenellus_contig10174:3019..3052Choristocarpus tenellus KU2346CDSC-tenellus_contig10174 3020..3052 +
1680789119.185965-CDS-C-tenellus_contig10174:3328..34511680789119.185965-CDS-C-tenellus_contig10174:3328..3451Choristocarpus tenellus KU2346CDSC-tenellus_contig10174 3329..3451 +
1680789119.2098308-CDS-C-tenellus_contig10174:5230..53081680789119.2098308-CDS-C-tenellus_contig10174:5230..5308Choristocarpus tenellus KU2346CDSC-tenellus_contig10174 5231..5308 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10174.1.1

>prot_C-tenellus_contig10174.1.1 ID=prot_C-tenellus_contig10174.1.1|Name=mRNA_C-tenellus_contig10174.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=78bp
MVAGVRKLAKQADWGSRDGTSSMSKAVLSYGDTEVEEANSKCMVVTTHII
MKAFRISINDRSNEPNGEGYDDSSVRS*
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mRNA from alignment at C-tenellus_contig10174:2424..5552+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10174.1.1 ID=mRNA_C-tenellus_contig10174.1.1|Name=mRNA_C-tenellus_contig10174.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3129bp|location=Sequence derived from alignment at C-tenellus_contig10174:2424..5552+ (Choristocarpus tenellus KU2346)
CCTGGACAGGTATCTCAGAGCTCTAGATGATGCTATCAGGACCAAGGATG
GGGTTGCTATTGGGCGATGCTTCAGTGCAGATAGGGTGGATGTGCCCTAC
AGTCAGGACTTCGTGCCGTGGTTGAATGAGGTGCGCCACAAACGCGATCA
TCTTGGATCGAGGCAATCTCCGATGTACCGCACAAGCTTTCACACGCCCT
GCTCCCACCTCCCTCTGAATTAATCGCCAGCGGAGTATTGACAGGCAGTG
CGAAAAGAACTTGCCCGAAGATGTTGCCGTGGTTGCGGGTGGTGTTCTAA
GATCTTTGAGTGCTACCCATGACCGGAAAGCAGAGGAGGCACACAAGTAC
TACCTCACCGCCCTCGAGTAAGCTCTCCAAAGTATCTTCAGATTCCTAAG
AGGCACCAATCGTGTTGCACTTATATTAGGTTCATCCTGTCTGCATCTTC
GAACAAGGATAGGGTGTGTTCGACGTCAACCATACCGTGAATTAACTTAC
AGCCCGAACCCTTGCAAACGTACCGTGCGTGATAGGTCATTTCTAGATCG
TCTTTACATTCCTGGGGGAACATGGCTGGCACCTTGTCTGTACTTGATGG
TGGCTGGCGTCAGAAAGTTGGCAAAGCAGGTGACCTGTTGCATTGGGGGA
AACTATATTCAGCCTATGGTCACACCGACAACTGCATCTTCAAATGATGT
CAATTGCTTCTGTCACATTAACGCCGCTTGACTAAGCCTCAATTTTCTAC
TTGCTTCATAATATACAGGCCATGGTCTTATGCTTGAGGTTGAAACGCCG
CCTTTGACGTGAGCCTCTTTCTACAGCAAATTGAAACTTAAGAGAATTGC
ATGGAAGCACCGATTGGTATCAATGGCACTAATGAGTAACGGTCTCTCTA
CACAGGCTGATTGGGGTTCAAGGGATGGCACCTCATCTATGTCAAAGGCG
GTGCTTAGCTATGGAGATACAGAAGTCGAGGAAGCTAATAGCAAGTGCAT
GGTGGTCACCACCCACATCATCATGAAGGTTAGTGTGCCCACTTGAACTA
TGCCTACTCTATTGCCTTCCTTCTGTGGCGGTTGCTTGATGGAAGATGTT
GTATTCATTCAAAGGGAATATGAGCTTAGATATGGTTGAACATAACTGCG
CACAAGAACACAGTAATACACACTCAGGTAGCATCTACACACATAGGAGT
GATCCATTTTACGTGTCGTGTTTAGAATACTTCAGCACATTCAGTTAGAA
GTACAGAATGACTGTTAGCCAGTCTGCTGTAGGGTTTTATCCCTTCACCT
CCAATTGCCTTAGTTGCATGTCCAGATATTGGTTACCCTTGAAAGTTGAT
CTCATTGGGACCAGTGTTTGGCTGAATTTCTGAATATAAAAAGTTTTAAT
CAACATCTCAAATGATCAAAATATGGCGTGCAAGAATAATTCCAATTTTA
ATACAACTCCACTATCCCTGAGACCCTCTTGTGCTTCAATCCGCCTGATA
CATACATACATACGCTTGCCTTTTGGAGGAACAATCCCGGAGCATTCGCC
GCAGACAAGCCACGTGAAATGGCTCTCTCAGGACATGCTTACTCCACATC
ACTCCATTAGTCTTAGCTTATCATTGAGAGTCACCTCTTTCATCTTTCAA
ACACTCCAGTAGGACTTCACGGGCCCCAAAACAATGGCTCTATTTGATGA
CCACACCGGGAGGGCCGCGATCCTTTTCAGAGATAGACTGTTCCTAGGCT
GTTCTTAGACTATTCCAGTCCCTTTTTTTTTTTTCCAAATTTTCTCTGCA
TATGCGAAAAGAATGCTCGCCATTCACTGAAGGGCATTACCTTTTTGGCC
CTGTGCTTTTAGCATCCGAGTTTTGTCGCCTTCCCTTCTTTCAATACTCG
ACGGTGCTGTTGGTCCTGGCAACTACTCCCATTTCGTTTTTGTTTTTTTT
CAATTTGTGCACTAGGTTGTGTATGTTTTGAAGCCGTTGCGTCTTCGTTT
TTTGCACAAAATGCAATCCACTGACTGCCGATGACGAGGGGTTTTGTAGT
GCTTTGGAGGTATTTTAGTTTGGTGCGCACGTAGAGGGTTATCGCAGTCG
ATACAAATGAAAGTTCAAATGTTGGATGGGAAGAGGAGTCCTGATGATGC
AGTTGAGGATTTAAAATCAATTCTTTTTTATTTTGTTCCAATCTGATTTT
TCTTGGCAGTTTGCTTTCAATCACCGCAAATTGTAGGAAGCATATGTGCT
TCCCCACGTTCAAAAAAGAGTGTTCTTGGCCACTTCTTCGTCATGCCTGC
AGGATTTTCATTTCCCAGCTGCTTTAAAGTATCACCGCTGAATAGGAAGT
AAGAGTACTGTTTTCTATGCTGTAGCAAAGTTTGAATGGAGCTCATGTTA
GGGGTGGACTCCGACAATAATCAGAGCCTCCGTGCAAAAAAAGAAAGAAA
GTGTTTTTTGATGCTCTTTTTTGTGTATATTTTGATGCTCTTTTTTGTGT
ATTTTTTTACGCTCTTTTTTTTTTTGGCGGTTAACTACTTGTACGTTCAC
GCGTGTATCTATATAGTATATGAACAGATCTTCCGTTCCATAGAGTTGCT
GGTTCTGTTGTAGGATAGTAGGGTCTCGGTGTAGTTTTAGATGCCTATGC
CTATAGAGAAGGTTTCCTATACGCTGGAGCGTTACGTTTTCTTATTGCTT
CTGTTTTTGTTTTTGTTTTTGTTTTTGTTATATTTTTATTTTTATTTTTA
TTTGGTGTTAAGCCGACTTTTTCAATGTGCCCATCCTGTTTCTACGATTC
TTGGCAGGCATTCCGCATCTCCATCAACGACCGCAGCAATGAACCCAACG
GTGAGGGGTACGACGACAGTTCAGTACGTTCATAATCGCCATACTGTGCA
CTACAAAAAGGACTGCTTGTGTTTGTAGCACGCTTACTATAGACTGTGGA
CTGAAATCTTCATTAGGGTTTTATTTATTTTTTGGTATCAGCCTTCGTTA
CTCCTATCTTTTCACCTTCCTATGTAATGCTGTTTACGATGGTCTGCCAA
CCCTAACCCTAACCCTAATCCTAACCCTATAGTATTGATGCTCTAATGCA
CCTCGCTTTGGTTCCAAGAACAGTCGGGG
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Coding sequence (CDS) from alignment at C-tenellus_contig10174:2424..5552+

>mRNA_C-tenellus_contig10174.1.1 ID=mRNA_C-tenellus_contig10174.1.1|Name=mRNA_C-tenellus_contig10174.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=234bp|location=Sequence derived from alignment at C-tenellus_contig10174:2424..5552+ (Choristocarpus tenellus KU2346)
ATGGTGGCTGGCGTCAGAAAGTTGGCAAAGCAGGCTGATTGGGGTTCAAG
GGATGGCACCTCATCTATGTCAAAGGCGGTGCTTAGCTATGGAGATACAG
AAGTCGAGGAAGCTAATAGCAAGTGCATGGTGGTCACCACCCACATCATC
ATGAAGGCATTCCGCATCTCCATCAACGACCGCAGCAATGAACCCAACGG
TGAGGGGTACGACGACAGTTCAGTACGTTCATAA
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