mRNA_C-tenellus_contig10169.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10169.2.1
Unique NamemRNA_C-tenellus_contig10169.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10169.2.1 vs. uniprot
Match: D7G0T6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0T6_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 1.180e-23
Identity = 77/295 (26.10%), Postives = 134/295 (45.42%), Query Frame = 1 
Query:    1 LRELARRYHFHFVGDSTIRRLAASFEAVFTGKAPNHHTYHRTVYHNTQGLDALFRWTPLC---PQVSEEVTKATQ--ELGRTGQKQLVFITSYGVHEISEA-----SQSKHLYLGPTKPCDLSVISSDRVRLSPR-ECRKPVANYIRNLGNESTAELEETITEDAMHRCLDVTNDLVALSQRK-----------------EGMRPIVLVLQGNPFRPRDGRFKWMKDLHQRRLIMLQELVAEEGTVGGGAGTGMPYMLEDSSSIFDRLECKR-KDDIHFYEPVKLTEAQMLWHVV 798
            L ++A ++ FHF+GDSTIRRL  SF ++FTG+   H   H  +  +T  L+  F W P C     V  ++       +  + G K+ V IT++GVH+  E        +   Y+    P     + +  VR +    C+   A  ++    +  A  + T  +    + +  + +    S  +                 +   P+V ++Q N + P      ++++L + +   +QE  A EG      G    Y+++DS S+F  L C R ++ IHF+EPVKL E +MLW ++
Sbjct:  137 LEDMASKFTFHFIGDSTIRRLGESFVSIFTGQGSKHDMVHSDLDFSTGNLETRFYWAPFCFGSESVGAKLATVMDGVKTAKRGDKRTVIITAFGVHDSYELPLLVKGSASTSYMDALPP---DFVDNGSVRTATLGACQATTAQLVQAAAAKVMAWADPTAEKGQWSKAVHASPNTTTRSTTETNGVSFSFGAPGTTAATDPTPPLVFLMQNNRYPPNSPEDNYLEELRRIQRGEVQEWEAGEGNEDAEGGI---YLVDDSVSLFRNLSCYRERNPIHFHEPVKLVEGKMLWDLL 425
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BLAST of mRNA_C-tenellus_contig10169.2.1 vs. uniprot
Match: A0A6H5JFC3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFC3_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 1.250e-16
Identity = 66/256 (25.78%), Postives = 115/256 (44.92%), Query Frame = 1 
Query:    1 LRELARRYHFHFVGDSTIRRLAASFEAVFTGKAPNHHTYHRTVYHNTQGLDALFRWTPLCPQVSEEVTKATQELG----RTGQKQLVFITSYGVHEI----SEASQSKHLYLGPTKPCDLSVISSDRVRLSPRECRKPVANYIRNLGNESTAELEETITEDAMHRCLDVTNDL----------------VALSQRKEGMRPIVLVLQGNPFRPRDGRFKWMKDLHQRRLIMLQELVAEEGTVGGGAGTGMPYMLED 696
            L +L+ RY FHFVGDST RRLA SF ++ TG+A  H   H  +  ++  L  +F W P+C     ++  +  E+     R G  + + IT++GVH       + + +   Y  P+         ++   L+  E       ++ NL    +A   +       HR LDV ++                 V+LS   EG+ P+V +LQ N + P     ++++ LH  +  ++++   +    G  AG    ++L+D
Sbjct:   79 LEDLSSRYVFHFVGDSTTRRLAESFVSILTGQASPHFVVHERIDMSSGSLKVIFHWAPMCIDARSKIQASIDEIVAAQLRNGDARAIIITAFGVHNAHRLYGDQAGTLPRYTAPSSHDTFREEDAEAAALNVCEEVTSQLVHVANLTAGRSASANQEKLYSPGHRGLDVADEGDPKFGRPRGTWTGGGDVSLSIDDEGLPPLVFLLQNNHYFPGSEEDRFLEHLHDVQDRVVRQGAKDIARHGENAGV---FVLDD 331
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BLAST of mRNA_C-tenellus_contig10169.2.1 vs. uniprot
Match: A0A6H5L6U4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6U4_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 2.080e-10
Identity = 50/178 (28.09%), Postives = 80/178 (44.94%), Query Frame = 1 
Query:    1 LRELARRYHFHFVGDSTIRRLAASFEAVFTGKAPNHHTYHRTVYHNTQGLDALFRWTPLCP---QVSEEVTKATQE-LGRTGQKQLVFITSYGVHEISEASQSKHLYLGPTKPCDL--SVISSDRVRLSPR-ECRKPVANYIRNL------GNESTAELEETITEDAMHRCLDVTNDL 495
            + ++A +Y FHF+GDST RRL  SF ++FTG+   H    R +  ++  L   F W PLC     V   +T      L     K+ V IT++GVH+  E   + + +  P+    L   ++  D +R +    CR      +R        G  +    EE    DA H+  +V+  +
Sbjct:  122 MEDIASKYSFHFIGDSTSRRLGESFVSIFTGRGSTHPVVQRDINFSSGNLKVHFYWAPLCSGPESVGAMLTTVMDAVLAAKDGKRAVIITAFGVHDAFELQHAANGHGSPSYQSTLPQDIVEKDGMRAAALGACRDATTQLVRTAAATAVPGTAAPPVEEEQSPGDAQHQLPNVSTQV 299
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BLAST of mRNA_C-tenellus_contig10169.2.1 vs. uniprot
Match: D7FUL3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL3_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 5.570e-5
Identity = 48/192 (25.00%), Postives = 75/192 (39.06%), Query Frame = 1 
Query:    1 LRELARRYHFHFVGDSTIRRLAASFEAVFTGKAPNHHTYHRTVYHNTQGLDALFRWTPLCPQVSEEVTKATQE-LG----------------------RTGQKQLVFITSYGVHEISEASQSKHLYLGPTKPCDLSVISSDRVRLSPRECRKPVANYIRNLGNESTAELEETITEDAMHRCLDVTNDLVALS 507
            L +LA +Y F F+GDST RRLA SF ++ +G+A  H   H  +  +   L   F W P C  V   V+ A ++ LG                          ++ V  T++GVH+ +E  +++                           R P  N    +G    A   +  T  A+  C D T +LV ++
Sbjct:  251 LLDLASKYEFLFIGDSTTRRLAESFVSIVSGRASTHPVVHHRIDMSRGDLKVTFLWAPCC-SVGGGVSAAVRDALGFRSSTYGSDNNYDGDDXXXXXXXXSPRRTVIFTAFGVHDATELRKAE---------------------------RDPELNQWYPMGLPQAAVATDGPTAAALQTCRDATRELVEVA 414
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10169.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G0T6_ECTSI1.180e-2326.10Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JFC3_9PHAE1.250e-1625.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6U4_9PHAE2.080e-1028.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUL3_ECTSI5.570e-525.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10169contigC-tenellus_contig10169:915..2402 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size798
Hectar predicted targeting categorymitochondrion
Exons3
Cds size798
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789118.89628-CDS-C-tenellus_contig10169:914..13141680789118.89628-CDS-C-tenellus_contig10169:914..1314Choristocarpus tenellus KU2346CDSC-tenellus_contig10169 915..1314 +
1680789118.911521-CDS-C-tenellus_contig10169:1938..21901680789118.911521-CDS-C-tenellus_contig10169:1938..2190Choristocarpus tenellus KU2346CDSC-tenellus_contig10169 1939..2190 +
1680789118.922562-CDS-C-tenellus_contig10169:2256..24021680789118.922562-CDS-C-tenellus_contig10169:2256..2402Choristocarpus tenellus KU2346CDSC-tenellus_contig10169 2257..2402 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10169.2.1prot_C-tenellus_contig10169.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10169 915..2402 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10169.2.1

>prot_C-tenellus_contig10169.2.1 ID=prot_C-tenellus_contig10169.2.1|Name=mRNA_C-tenellus_contig10169.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=266bp
LRELARRYHFHFVGDSTIRRLAASFEAVFTGKAPNHHTYHRTVYHNTQGL
DALFRWTPLCPQVSEEVTKATQELGRTGQKQLVFITSYGVHEISEASQSK
HLYLGPTKPCDLSVISSDRVRLSPRECRKPVANYIRNLGNESTAELEETI
TEDAMHRCLDVTNDLVALSQRKEGMRPIVLVLQGNPFRPRDGRFKWMKDL
HQRRLIMLQELVAEEGTVGGGAGTGMPYMLEDSSSIFDRLECKRKDDIHF
YEPVKLTEAQMLWHVV
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mRNA from alignment at C-tenellus_contig10169:915..2402+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10169.2.1 ID=mRNA_C-tenellus_contig10169.2.1|Name=mRNA_C-tenellus_contig10169.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1488bp|location=Sequence derived from alignment at C-tenellus_contig10169:915..2402+ (Choristocarpus tenellus KU2346)
TTGAGAGAGCTTGCGAGGAGGTACCACTTTCATTTTGTTGGGGACAGCAC
TATCCGGCGTCTGGCTGCTAGCTTCGAGGCCGTCTTCACCGGCAAGGCCC
CGAATCACCATACCTACCACCGAACAGTATACCATAACACCCAAGGGTTA
GATGCCTTATTCAGGTGGACCCCTCTTTGCCCACAAGTGTCAGAGGAAGT
CACCAAGGCCACACAAGAGCTCGGCAGGACAGGACAAAAACAGCTTGTGT
TTATCACCAGCTATGGAGTGCATGAGATCAGTGAGGCAAGTCAGTCCAAA
CATTTGTATCTCGGGCCCACTAAGCCCTGTGATTTGTCAGTTATTTCCTC
TGATCGTGTTAGACTCTCACCTCGAGAGTGTAGGAAACCGGTAGCAAATT
GTGTTGCCTAAGGAAGGCCCTGTCAAGTCGCAATGTTCCATACATGGTAC
TTGTAGGTCTATATTTTTCCATATCGTTTATCTTTATCATTTCCAGTCCA
TGCACTGTACCGTATGGTAGATAGAGGGGCTCCATTCCTTGTGCAACTAT
CAATAGTTTTTATCACGAGGATGGTTGTTTCGATGGACTAGGTGGGGGTA
ACCTACCTCTTAACCAATTCTGCAGACATTAAGGTCCAGGAAACGAGGTA
TACCCTATCCTTCTGTTTCCTTCTTCTTGTACTTCATTTTTTCTCCCCCT
ATCAAAAAGTGGTCAAGACGGATGTGTTGTGCGTGTGTGCCACAGCAGCA
GTGGAGGATAGCTGCTGGGAAAGAAACTCTCCATCAGGCCCCATATACCC
TGAGCCAGTGGTATCAGATTCATCCTTGTACCTGCTCAACCTGTGATGCT
TTGCACAACAGCCCTTTTCTATGCTTCTTGGAATATTACTATTCTGCAAA
GCGAACTACTAACTTCATGATACAGGTACCTTTAGTCAACACCATCCTTC
ATGCCCCAAGTGACCTCATAATGATGATTCTGTGTGGATATACCTGCACT
TTGCCCTTGTACAGGCACGAAGAGATATCCGAAACCTTGGGAATGAATCA
ACAGCGGAATTAGAGGAGACAATCACAGAGGATGCAATGCACCGTTGTCT
GGATGTAACAAATGATCTTGTTGCCCTTTCCCAGCGAAAGGAAGGAATGC
GGCCAATCGTGCTGGTACTACAGGGAAACCCATTCCGGCCACGGGATGGT
CGTTTTAAGTGGATGAAAGACCTGCATCAGCGGCGGCTAATCATGTTGCA
AGAGCTGGTTGCTGAGGAAGGCACTGGTAAAGATAAAGAGGAAAGAGAGA
AAAGAGAATTGAGGAATCCCAAAGGGTTATCTGGTCAAGTAGTTGGTGGA
GGGGCAGGGACAGGGATGCCGTATATGCTAGAAGATTCATCCAGCATTTT
TGACCGTTTGGAGTGTAAGAGGAAGGATGACATCCACTTCTACGAGCCAG
TTAAGCTGACTGAAGCGCAGATGCTCTGGCATGTAGTT
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Coding sequence (CDS) from alignment at C-tenellus_contig10169:915..2402+

>mRNA_C-tenellus_contig10169.2.1 ID=mRNA_C-tenellus_contig10169.2.1|Name=mRNA_C-tenellus_contig10169.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=798bp|location=Sequence derived from alignment at C-tenellus_contig10169:915..2402+ (Choristocarpus tenellus KU2346)
TTGAGAGAGCTTGCGAGGAGGTACCACTTTCATTTTGTTGGGGACAGCAC
TATCCGGCGTCTGGCTGCTAGCTTCGAGGCCGTCTTCACCGGCAAGGCCC
CGAATCACCATACCTACCACCGAACAGTATACCATAACACCCAAGGGTTA
GATGCCTTATTCAGGTGGACCCCTCTTTGCCCACAAGTGTCAGAGGAAGT
CACCAAGGCCACACAAGAGCTCGGCAGGACAGGACAAAAACAGCTTGTGT
TTATCACCAGCTATGGAGTGCATGAGATCAGTGAGGCAAGTCAGTCCAAA
CATTTGTATCTCGGGCCCACTAAGCCCTGTGATTTGTCAGTTATTTCCTC
TGATCGTGTTAGACTCTCACCTCGAGAGTGTAGGAAACCGGTAGCAAATT
ATATCCGAAACCTTGGGAATGAATCAACAGCGGAATTAGAGGAGACAATC
ACAGAGGATGCAATGCACCGTTGTCTGGATGTAACAAATGATCTTGTTGC
CCTTTCCCAGCGAAAGGAAGGAATGCGGCCAATCGTGCTGGTACTACAGG
GAAACCCATTCCGGCCACGGGATGGTCGTTTTAAGTGGATGAAAGACCTG
CATCAGCGGCGGCTAATCATGTTGCAAGAGCTGGTTGCTGAGGAAGGCAC
TGTTGGTGGAGGGGCAGGGACAGGGATGCCGTATATGCTAGAAGATTCAT
CCAGCATTTTTGACCGTTTGGAGTGTAAGAGGAAGGATGACATCCACTTC
TACGAGCCAGTTAAGCTGACTGAAGCGCAGATGCTCTGGCATGTAGTT
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