mRNA_C-tenellus_contig10166.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10166.1.1
Unique NamemRNA_C-tenellus_contig10166.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10166.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10166contigC-tenellus_contig10166:1379..3629 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size404
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_005610.1
Cds size402
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789118.7906756-CDS-C-tenellus_contig10166:1378..16961680789118.7906756-CDS-C-tenellus_contig10166:1378..1696Choristocarpus tenellus KU2346CDSC-tenellus_contig10166 1379..1696 +
1680789118.8021398-CDS-C-tenellus_contig10166:3544..36281680789118.8021398-CDS-C-tenellus_contig10166:3544..3628Choristocarpus tenellus KU2346CDSC-tenellus_contig10166 3545..3628 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10166.1.1prot_C-tenellus_contig10166.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10166 1379..3628 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10166.1.1

>prot_C-tenellus_contig10166.1.1 ID=prot_C-tenellus_contig10166.1.1|Name=mRNA_C-tenellus_contig10166.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=134bp
GKEDDILTRSRRSRGEGPADIPQCMNQVLGTGQVGPPPVETGSPTPQMTE
SQLRTCDIYPDTASDLLQGGLGMDMGDTDINVGISMIASQAILNRRLGNI
RESLQSLKYRAESSGRLGDIHHYSSLAGTRSYIK
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mRNA from alignment at C-tenellus_contig10166:1379..3629+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10166.1.1 ID=mRNA_C-tenellus_contig10166.1.1|Name=mRNA_C-tenellus_contig10166.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2251bp|location=Sequence derived from alignment at C-tenellus_contig10166:1379..3629+ (Choristocarpus tenellus KU2346)
GGCAAGGAGGACGATATATTGACAAGGAGCAGGAGGAGTAGAGGAGAAGG
CCCTGCTGACATTCCACAGTGTATGAATCAGGTATTGGGGACAGGTCAGG
TTGGGCCACCCCCTGTTGAAACAGGGTCTCCAACACCACAAATGACAGAG
TCGCAACTGAGAACTTGTGACATATATCCTGACACTGCCTCTGACCTTCT
CCAAGGAGGATTGGGTATGGATATGGGAGATACTGATATAAATGTGGGGA
TCAGCATGATTGCATCTCAAGCAATCCTCAATAGGAGACTGGGCAACATT
CGGGAGAGCCTGCAGTCTGTGAGTGGTAGAGATGTATGTCATCAGTACTA
AGATATTACAGGGTGTTAGCTGTGCCCTCATGAGTGAAGAGTTGAGACTG
ATTTTTGTGATAATAGAATGCTTATCACATTCTGTTCCAGTGCCACCCTA
TTCTTTCTATTGCTATATGACATTCTTCAGACTAATAATGCCAGATCTTG
GTTTAAAGTTTAAAGCCTTTCCATTATCCATCGGGGGTCAAATCAAGGAT
TGATGGCTAGTGCAATCTTCACACAGCATTCCACTTCGGAGTATTGGAAG
TGCATTGCATCCCAATGTACTATTCTTCTTATCTTCCAGGTCTCTTCTCA
CCATGTTAATTTCCACCCCAGAACCCTGGAATTCAAAAGGCCAGGTTTAT
ATTTTATCCGAACCTTTTTTCGAAATGTCCGATAAAACTTGCATTTGTTC
TTGATGAGGAACACAAAAAAATAGATTTTCAGTAGACAATAAAGTAGGTA
GGAGTACGTAATAGGTCCTCACATTGGATCACTTAAATCTGACATAATTC
CCATAGAATAATTAATACATATTTCGTAGTACCAACCAATTACGGTTTGT
ACCGTAGATCATAATTGTACGAATTTTGTCTACAACCAGAACAATTTTTT
TTAATATATTACCCTTTCTGTACGATCTTCAATTTGATTGTATTTCCGGT
GTTATTTTAAACTCAATTACGAAAAATTAATGATGGAGTGGGGCGACAAA
ACTAACACGGGAACACTTTTGCAGGGATGATATTAATGCCACCTTTCATG
TAGGTGAAGGAACTCAATATGATCATTTGCGCGGGTTGAAAAACCTAGAC
AGAGTTGGAGAAGTGAGACAAGTCCTCTACGAATCAATGCATCAACCAAA
AAACCATCAGCTTATTCTGTAAGAATGGAGGATAGTGATATATTGGGTTG
AGGAATAGGCAAGACCCCCAAGGAGACATGGTGTAAAGGGCACGTGATTT
ACAACTTCTAGCTAAACTCTCTTAGTTCTTCATGGAGCGATGAGCAGTAG
CGTAAAATCATCTATACATCTGGACGGGCATGTCACTTGAGCCTGTATGA
ATAGTTGACACAAGTCTGTGTACATAGGAGTTGTACACCAACCAAGACTA
TTGTAGTGTTCACCTACATTCATACATATCCAAGATGTTGAATATGAAAT
GTCACCCCCTGTACACATATGTATGTATATATGTCAAAACAAGCCATCAA
CCAGGTTCATCACATGAACAACTCCAGAGTGTGAATTATCTTCAATGCCC
ACTACCAGAATGTGGGGAGACTCCTTCACAAAAAAGGAGTTCTTAACGCC
TTGTCAGGCATTTATGAGTACAATACGAAAGGATTGTTTGCACATTTGTT
GTGTCTTCAATAAGTCAGTCGTGCATACTGGTAGAGTATGTATATACTCA
GCATACATACAAGTATTTAATCAACATTTTAGTCTCAGATGTGGTGTTGA
TAGTTGGTGGTATAGTGTGAAAAGGTGGTGGAAAACGATTTGTGGCCCTC
TCTTAACCGACACAAATGAAATGTTGTCCTATTTTTTCCTGCTACTAACC
CTAACCCCAATTTTGTTACACAGAGGTGGGTAAAAAATGGTGGTGATCCA
ATTCGCGGATACTGGTGATGGTAGGAGCTGCTACATAAAAAAAAACTTCG
ATGTTGGAATCATTCTTGTACGTCTATGAGCTGCAACCATTGGTGAATCT
TTCATTCCTAAGCAAGAATATATATGAGGTATTCCAATTTCAGAAACTTA
CCGTGCGTTCGACCGTACTTTTTTCCTCCTCCCCCATAACTTTAAATTAC
GTTTTTGTACCCACAGCTCAAGTACCGTGCCGAATCTTCAGGCAGGCTTG
GTGACATTCATCACTACTCATCACTGGCTGGTACAAGATCATACATCAAG
A
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Coding sequence (CDS) from alignment at C-tenellus_contig10166:1379..3629+

>mRNA_C-tenellus_contig10166.1.1 ID=mRNA_C-tenellus_contig10166.1.1|Name=mRNA_C-tenellus_contig10166.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=402bp|location=Sequence derived from alignment at C-tenellus_contig10166:1379..3629+ (Choristocarpus tenellus KU2346)
GGCAAGGAGGACGATATATTGACAAGGAGCAGGAGGAGTAGAGGAGAAGG
CCCTGCTGACATTCCACAGTGTATGAATCAGGTATTGGGGACAGGTCAGG
TTGGGCCACCCCCTGTTGAAACAGGGTCTCCAACACCACAAATGACAGAG
TCGCAACTGAGAACTTGTGACATATATCCTGACACTGCCTCTGACCTTCT
CCAAGGAGGATTGGGTATGGATATGGGAGATACTGATATAAATGTGGGGA
TCAGCATGATTGCATCTCAAGCAATCCTCAATAGGAGACTGGGCAACATT
CGGGAGAGCCTGCAGTCTCTCAAGTACCGTGCCGAATCTTCAGGCAGGCT
TGGTGACATTCATCACTACTCATCACTGGCTGGTACAAGATCATACATCA
AG
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