mRNA_C-tenellus_contig10143.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10143.1.1
Unique NamemRNA_C-tenellus_contig10143.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
[Close]
BLAST of mRNA_C-tenellus_contig10143.1.1 vs. uniprot
Match: S8E361_FOMPI (F-box domain-containing protein n=1 Tax=Fomitopsis pinicola (strain FP-58527) TaxID=743788 RepID=S8E361_FOMPI)

HSP 1 Score: 52.8 bits (125), Expect = 2.080e-6
Identity = 22/58 (37.93%), Postives = 35/58 (60.34%), Query Frame = 1 
Query:    1 IPSDIVPLMFQFMDAPTLCSATEVSQEWKSQGNDDLLWKRLCRSR--QADTLHTWGIP 168
            IP ++   +  ++DA +LC A +VS++WKS  +DDLLW+ +C     Q      WG+P
Sbjct:  154 IPREVALRVLGYLDATSLCRAAQVSKQWKSLADDDLLWRGICEQHIGQKCLKCGWGLP 211
[Close]
BLAST of mRNA_C-tenellus_contig10143.1.1 vs. uniprot
Match: A0A1C7MEL1_GRIFR (Putative E3 ubiquitin ligase complex SCF subunit sconB n=1 Tax=Grifola frondosa TaxID=5627 RepID=A0A1C7MEL1_GRIFR)

HSP 1 Score: 51.2 bits (121), Expect = 7.310e-6
Identity = 21/58 (36.21%), Postives = 35/58 (60.34%), Query Frame = 1 
Query:    1 IPSDIVPLMFQFMDAPTLCSATEVSQEWKSQGNDDLLWKRLCRSR--QADTLHTWGIP 168
            +P ++   +  ++DA +LC A +VS++WKS  +DDLLW+ +C     Q      WG+P
Sbjct:  161 LPREVSLKILGYLDATSLCRAAQVSRQWKSLADDDLLWRGICEQHIGQKCLKCGWGLP 218
[Close]
BLAST of mRNA_C-tenellus_contig10143.1.1 vs. uniprot
Match: UPI001C7B5080 (uncharacterized protein n=1 Tax=Marasmius oreades TaxID=181124 RepID=UPI001C7B5080)

HSP 1 Score: 50.8 bits (120), Expect = 9.970e-6
Identity = 19/57 (33.33%), Postives = 33/57 (57.89%), Query Frame = 1 
Query:    4 PSDIVPLMFQFMDAPTLCSATEVSQEWKSQGNDDLLWKRLCRSRQADTLHT--WGIP 168
            P ++   +  ++DA +LC A++VS+ WK   +DD+LW+ +C        H   WG+P
Sbjct:  159 PREVSLKVLGYLDATSLCRASQVSKRWKKLADDDILWRGICEQHIGTKCHKCGWGLP 215
[Close]
BLAST of mRNA_C-tenellus_contig10143.1.1 vs. uniprot
Match: A0A5K1K0Z1_9APHY (Beta-glucosidase (EC) n=1 Tax=Ganoderma boninense TaxID=34458 RepID=A0A5K1K0Z1_9APHY)

HSP 1 Score: 50.4 bits (119), Expect = 1.360e-5
Identity = 19/58 (32.76%), Postives = 36/58 (62.07%), Query Frame = 1 
Query:    1 IPSDIVPLMFQFMDAPTLCSATEVSQEWKSQGNDDLLWKRLCRSR--QADTLHTWGIP 168
            +P +++  +  ++DA +LC A +VS++W+S  +DD+LW+ +C     Q      WG+P
Sbjct:   26 LPREVLLKILGYLDATSLCRAAQVSRQWRSLADDDILWRGICEQHIGQKCLKCGWGLP 83
[Close]
BLAST of mRNA_C-tenellus_contig10143.1.1 vs. uniprot
Match: A0A1X6N8K1_9APHY (F-box domain-containing protein n=2 Tax=Postia placenta TaxID=104341 RepID=A0A1X6N8K1_9APHY)

HSP 1 Score: 50.4 bits (119), Expect = 1.370e-5
Identity = 20/58 (34.48%), Postives = 35/58 (60.34%), Query Frame = 1 
Query:    1 IPSDIVPLMFQFMDAPTLCSATEVSQEWKSQGNDDLLWKRLCRSR--QADTLHTWGIP 168
            +P ++   +  ++DA +LC A +VS++WKS  +DD+LW+ +C     Q      WG+P
Sbjct:  165 LPREVSLKILGYLDATSLCRAAQVSRQWKSLADDDILWRGICEQHIGQKCLKCGWGLP 222
[Close]
BLAST of mRNA_C-tenellus_contig10143.1.1 vs. uniprot
Match: A0A1Y2I946_PYCCO (WD40 repeat-like protein n=1 Tax=Trametes coccinea BRFM310 TaxID=1353009 RepID=A0A1Y2I946_PYCCO)

HSP 1 Score: 50.4 bits (119), Expect = 1.370e-5
Identity = 20/58 (34.48%), Postives = 35/58 (60.34%), Query Frame = 1 
Query:    1 IPSDIVPLMFQFMDAPTLCSATEVSQEWKSQGNDDLLWKRLCRSR--QADTLHTWGIP 168
            +P ++   +  ++DA +LC A +VS++WKS  +DD+LW+ +C     Q      WG+P
Sbjct:  179 LPREVSLKILGYLDATSLCRAAQVSRQWKSLADDDILWRGICEQHIGQKCLKCGWGLP 236
[Close]
BLAST of mRNA_C-tenellus_contig10143.1.1 vs. uniprot
Match: A0A2G8SA44_9APHY (Transporter n=1 Tax=Ganoderma sinense ZZ0214-1 TaxID=1077348 RepID=A0A2G8SA44_9APHY)

HSP 1 Score: 50.4 bits (119), Expect = 1.370e-5
Identity = 19/58 (32.76%), Postives = 36/58 (62.07%), Query Frame = 1 
Query:    1 IPSDIVPLMFQFMDAPTLCSATEVSQEWKSQGNDDLLWKRLCRSR--QADTLHTWGIP 168
            +P +++  +  ++DA +LC A +VS++W+S  +DD+LW+ +C     Q      WG+P
Sbjct:  171 LPREVLLKILGYLDATSLCRAAQVSRQWRSLADDDILWRGICEQHIGQKCLKCGWGLP 228
[Close]
BLAST of mRNA_C-tenellus_contig10143.1.1 vs. uniprot
Match: A0A1M2V981_TRAPU (F-box domain-containing protein n=2 Tax=Trametes TaxID=5324 RepID=A0A1M2V981_TRAPU)

HSP 1 Score: 50.4 bits (119), Expect = 1.370e-5
Identity = 20/58 (34.48%), Postives = 35/58 (60.34%), Query Frame = 1 
Query:    1 IPSDIVPLMFQFMDAPTLCSATEVSQEWKSQGNDDLLWKRLCRSR--QADTLHTWGIP 168
            +P ++   +  ++DA +LC A +VS++WKS  +DD+LW+ +C     Q      WG+P
Sbjct:  181 LPREVSLKVLGYLDATSLCRAAQVSRQWKSLADDDILWRGICEQHIGQKCLKCGWGLP 238
[Close]
BLAST of mRNA_C-tenellus_contig10143.1.1 vs. uniprot
Match: J4IB24_9APHY (Uncharacterized protein n=1 Tax=Fibroporia radiculosa TaxID=599839 RepID=J4IB24_9APHY)

HSP 1 Score: 50.4 bits (119), Expect = 1.380e-5
Identity = 20/58 (34.48%), Postives = 35/58 (60.34%), Query Frame = 1 
Query:    1 IPSDIVPLMFQFMDAPTLCSATEVSQEWKSQGNDDLLWKRLCRSR--QADTLHTWGIP 168
            +P ++   +  ++DA +LC A +VS++WKS  +DD+LW+ +C     Q      WG+P
Sbjct:  162 LPREVSLRVLGYLDATSLCRAAQVSRQWKSLADDDILWRGICEQHIGQKCLKCGWGLP 219
[Close]
BLAST of mRNA_C-tenellus_contig10143.1.1 vs. uniprot
Match: A0A0D0DHE3_9AGAM (F-box domain-containing protein n=1 Tax=Paxillus rubicundulus Ve08.2h10 TaxID=930991 RepID=A0A0D0DHE3_9AGAM)

HSP 1 Score: 50.1 bits (118), Expect = 1.870e-5
Identity = 19/58 (32.76%), Postives = 34/58 (58.62%), Query Frame = 1 
Query:    1 IPSDIVPLMFQFMDAPTLCSATEVSQEWKSQGNDDLLWKRLCRSRQADTLHT--WGIP 168
            +P ++   +  ++DA +LC A +VS++W S  +DD+LW+ +C         T  WG+P
Sbjct:  160 LPREVSLKVLAYLDATSLCRAAQVSKQWHSLADDDILWRGICEQHIGQKCLTCGWGLP 217
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10143.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
S8E361_FOMPI2.080e-637.93F-box domain-containing protein n=1 Tax=Fomitopsis... [more]
A0A1C7MEL1_GRIFR7.310e-636.21Putative E3 ubiquitin ligase complex SCF subunit s... [more]
UPI001C7B50809.970e-633.33uncharacterized protein n=1 Tax=Marasmius oreades ... [more]
A0A5K1K0Z1_9APHY1.360e-532.76Beta-glucosidase (EC) n=1 Tax=Ganoderma boninense ... [more]
A0A1X6N8K1_9APHY1.370e-534.48F-box domain-containing protein n=2 Tax=Postia pla... [more]
A0A1Y2I946_PYCCO1.370e-534.48WD40 repeat-like protein n=1 Tax=Trametes coccinea... [more]
A0A2G8SA44_9APHY1.370e-532.76Transporter n=1 Tax=Ganoderma sinense ZZ0214-1 Tax... [more]
A0A1M2V981_TRAPU1.370e-534.48F-box domain-containing protein n=2 Tax=Trametes T... [more]
J4IB24_9APHY1.380e-534.48Uncharacterized protein n=1 Tax=Fibroporia radicul... [more]
A0A0D0DHE3_9AGAM1.870e-532.76F-box domain-containing protein n=1 Tax=Paxillus r... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10143contigC-tenellus_contig10143:129..980 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog936053.I1CHJ6
Preferred namesconB
PFAMsF-box,F-box-like,WD40
Model size192
Max annot lvl4751|Fungi
KEGG koko:K10259
KEGG Pathwayko04111,ko04120,map04111,map04120
KEGG ModuleM00379
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000082,GO:0000083,GO:0000151,GO:0000152,GO:0000209,GO:0000278,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006275,GO:0006355,GO:0006464,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0007049,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010035,GO:0010038,GO:0010468,GO:0010498,GO:0010556,GO:0016567,GO:0019005,GO:0019219,GO:0019222,GO:0019538,GO:0019941,GO:0022402,GO:0030163,GO:0030174,GO:0030674,GO:0031146,GO:0031323,GO:0031326,GO:0031461,GO:0032182,GO:0032446,GO:0032991,GO:0034641,GO:0034645,GO:0036211,GO:0042221,GO:0043130,GO:0043161,GO:0043170,GO:0043224,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044770,GO:0044772,GO:0044843,GO:0046483,GO:0046685,GO:0046686,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051171,GO:0051252,GO:0051603,GO:0060090,GO:0060255,GO:0065007,GO:0070647,GO:0071704,GO:0080090,GO:0090304,GO:0090329,GO:1901360,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1902494,GO:1903047,GO:1903506,GO:1990234,GO:2000112,GO:2001141
Exons2
Evalue4.52e-07
EggNOG OGsKOG0274@1|root,KOG0274@2759|Eukaryota,38CAJ@33154|Opisthokonta,3NUDS@4751|Fungi,1GS5D@112252|Fungi incertae sedis
DescriptionA Receptor for Ubiquitination Targets
Cds size168
COG categoryS
BRITEko00000,ko00001,ko00002,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789117.5885262-CDS-C-tenellus_contig10143:128..2871680789117.5885262-CDS-C-tenellus_contig10143:128..287Choristocarpus tenellus KU2346CDSC-tenellus_contig10143 129..287 -
1680789117.6032913-CDS-C-tenellus_contig10143:947..9561680789117.6032913-CDS-C-tenellus_contig10143:947..956Choristocarpus tenellus KU2346CDSC-tenellus_contig10143 948..956 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789117.611921-UTR-C-tenellus_contig10143:956..9801680789117.611921-UTR-C-tenellus_contig10143:956..980Choristocarpus tenellus KU2346UTRC-tenellus_contig10143 957..980 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10143.1.1prot_C-tenellus_contig10143.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10143 129..956 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10143.1.1

>prot_C-tenellus_contig10143.1.1 ID=prot_C-tenellus_contig10143.1.1|Name=mRNA_C-tenellus_contig10143.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=56bp
MFQFMDAPTLCSATEVSQEWKSQGNDDLLWKRLCRSRQADTLHTWGIPPE
AHYLT*
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mRNA from alignment at C-tenellus_contig10143:129..980-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10143.1.1 ID=mRNA_C-tenellus_contig10143.1.1|Name=mRNA_C-tenellus_contig10143.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=852bp|location=Sequence derived from alignment at C-tenellus_contig10143:129..980- (Choristocarpus tenellus KU2346)
ATTCCCTCTGACATTGTGCCCCTCATGTTTCAGGTGAGGTGACCTTTAAT
CATCATGTGTGAGTGCATGTGTGTGTGTGTGTGTGTGTGTGTGTTTATGT
CTATTTGCGAATGTGTTTTAGAATATTGTACAGTAAGGTGTGCGGTAAAA
GATGACTTGTACTGTACACCACTCGGGACCAACACCATACAGTCATTCAT
TTATAGTTTCTTTTTTACAATGTACCCTCTTTTCGTTAGAATAATTTATC
CACCGCCTCCCCCTGTTTTGGCAGTATTGCCATTCCGATATATGTGTACT
ACACACCTTGTGCTGATTTTGCTCGCCTCTTAATGACAGGCAGCTCAAGA
GTACAAAAAAGAACAAGAGGCCATTTTTATTTTTTATTTTTTAATAAAAA
ATAAAAGGGGTTTCAACAATGCGAAGATTTCCTGCAGTTCAATCAAATAT
TTCTAAAAAATCAAATTTCTTCACCTTTTTTTTTTCTCCTTTTTTTTCTC
ATGTTTTAATAAGCATCTGCAACAATGCTGCCATGTTTGATGCGCTGCTT
TCTACCGGTAGTGTGTAGATGGCTCTGGTAGCCAGCTCCGGGGCAATCTA
TTCATTTCTAGACATGCTTACGCACATGAACCTACACACACCCACAGCTA
TGTACTCCAATCTCTGTATTCCCCTTTTAAAAAATGATTTTAGTTCATGG
ATGCACCCACGCTCTGTAGCGCTACGGAGGTGAGCCAGGAGTGGAAGAGT
CAGGGCAACGATGATCTCCTCTGGAAACGTCTATGCCGGAGCAGGCAAGC
TGACACCCTGCACACTTGGGGTATACCCCCCGAAGCCCATTACCTAACAT
GA
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Coding sequence (CDS) from alignment at C-tenellus_contig10143:129..980-

>mRNA_C-tenellus_contig10143.1.1 ID=mRNA_C-tenellus_contig10143.1.1|Name=mRNA_C-tenellus_contig10143.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=168bp|location=Sequence derived from alignment at C-tenellus_contig10143:129..980- (Choristocarpus tenellus KU2346)
ATGTTTCAGTTCATGGATGCACCCACGCTCTGTAGCGCTACGGAGGTGAG
CCAGGAGTGGAAGAGTCAGGGCAACGATGATCTCCTCTGGAAACGTCTAT
GCCGGAGCAGGCAAGCTGACACCCTGCACACTTGGGGTATACCCCCCGAA
GCCCATTACCTAACATGA
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