mRNA_C-tenellus_contig1013.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig1013.2.1
Unique NamemRNA_C-tenellus_contig1013.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
[Close]
BLAST of mRNA_C-tenellus_contig1013.2.1 vs. uniprot
Match: D7G631_ECTSI (Sld5 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G631_ECTSI)

HSP 1 Score: 191 bits (486), Expect = 5.000e-57
Identity = 96/129 (74.42%), Postives = 113/129 (87.60%), Query Frame = 1 
Query:  196 RCKIACPGWMTVSALEKVLREERDNDKSFTPLPHHYLEIASLLLNSASDDIVEADRVRTLLEDVENVRKAKMYEGMGAAAQQVNQAVQVNDLGAMELLTVRNCFAEALGNLYVVSGMKASDERARELGE 582
            +C+IACP +M+V  LE+VLR ER++   FTPLPHHYLEIASLLLN+ASDDI E DRVRTLLEDVENVR+AKMYEGMG+AAQ+V QAV+VNDLGAMELL VR+ FAEAL +LYVVSG K++D RAR+L E
Sbjct:   68 KCQIACPSFMSVGYLEQVLRREREDAAVFTPLPHHYLEIASLLLNTASDDIEEPDRVRTLLEDVENVRRAKMYEGMGSAAQEVQQAVKVNDLGAMELLPVRSFFAEALASLYVVSGQKSADHRARDLEE 196
[Close]
BLAST of mRNA_C-tenellus_contig1013.2.1 vs. uniprot
Match: A0A836CII2_9STRA (Sld5 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CII2_9STRA)

HSP 1 Score: 134 bits (336), Expect = 1.050e-34
Identity = 69/127 (54.33%), Postives = 94/127 (74.02%), Query Frame = 1 
Query:  193 SRCKIACPGWMTVSALEKVLREERDNDKSFTPLPHHYLEIASLLLNSASDDI-VEADRVRTLLEDVENVRKAKMYEGMGAAAQQVNQAVQVNDLGAMELLTVRNCFAEALGNLYVVSGMKASDERAR 570
            ++  IACP WMT  +LE+VL  ER  +++F  LP HYLEI+SLLL+ A+DD+  + DR+R LLED+ENVR+ KMY+GMG AAQ+ + A++VN +GAMELL VR  F+ AL ++Y +SG K   E AR
Sbjct:   73 NKASIACPPWMTAESLERVLAAER-REETFAELPFHYLEISSLLLSVAADDMGQQVDRMRVLLEDIENVRQGKMYKGMGDAAQRADGAIKVNRIGAMELLPVRTFFSAALSSMYDISGAKGRAEVAR 198
[Close]
BLAST of mRNA_C-tenellus_contig1013.2.1 vs. uniprot
Match: A0A2D4C9F5_PYTIN (DNA replication complex GINS protein PSF2 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C9F5_PYTIN)

HSP 1 Score: 92.8 bits (229), Expect = 3.830e-19
Identity = 50/137 (36.50%), Postives = 80/137 (58.39%), Query Frame = 1 
Query:  193 SRCKIACPGWMTVSALEKVLREERDNDKSFTPLPHHYLEIASLLLNSASDDIVEADRVRTLLEDVENVRKAKMYEGMGAAAQQVNQ-----AVQVNDLGAMELLTVRNCFAEALGNLYVVSGMKASDERARELGEGS 588
            ++C+I  P W +V  L + L  E+D+D  F  LP HYLEIASLL   A++DI + + +R+LLED++NVR+ K+  G+   A  V       A+Q+N++GA+E+ +VR     +L   Y ++ +   +    E G  S
Sbjct:   68 NKCRIIEPSWFSVDYLSQRLEREKDSDV-FEELPFHYLEIASLLFKHAAEDIEQIEHIRSLLEDIQNVRQDKIRNGLYKIANDVQSGGTAYAIQMNNIGALEVNSVRQFMIGSLNKFYRLAKLSEDENDGDEYGSQS 203
[Close]
BLAST of mRNA_C-tenellus_contig1013.2.1 vs. uniprot
Match: A0A6A3SX89_9STRA (DNA replication complex GINS protein PSF2 n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3SX89_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 1.390e-18
Identity = 47/129 (36.43%), Postives = 80/129 (62.02%), Query Frame = 1 
Query:  193 SRCKIACPGWMTVSALEKVLREERDNDKSFTPLPHHYLEIASLLLNSASDDIVEADRVRTLLEDVENVRKAKMYEGMGAAAQQVNQA------VQVNDLGAMELLTVRNCFAEALGNLYVVSGMKASDE 561
            ++C+I  P W++V  L   L  E+ +D +F  LP HYLE+ASLLL +A +D+ + + +R+LLED++NVR+ K+  G+   A  V Q+      +Q+N++ A+E+ +VR     +L   Y +S + A +E
Sbjct:   63 NKCRILAPSWLSVDYLTTRLEREKTSD-AFEELPFHYLEVASLLLKNAPEDLNQGEHMRSLLEDLQNVRQDKIRNGLSRIAGDVVQSGGSASVIQMNNISALEINSVREFMIGSLNQFYRLSQLNAEEE 190
[Close]
BLAST of mRNA_C-tenellus_contig1013.2.1 vs. uniprot
Match: G4ZBG3_PHYSP (DNA replication complex GINS protein PSF2 n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZBG3_PHYSP)

HSP 1 Score: 91.3 bits (225), Expect = 1.390e-18
Identity = 47/129 (36.43%), Postives = 80/129 (62.02%), Query Frame = 1 
Query:  193 SRCKIACPGWMTVSALEKVLREERDNDKSFTPLPHHYLEIASLLLNSASDDIVEADRVRTLLEDVENVRKAKMYEGMGAAAQQVNQA------VQVNDLGAMELLTVRNCFAEALGNLYVVSGMKASDE 561
            ++C+I  P W++V  L   L  E+ +D +F  LP HYLE+ASLLL +A +D+ + + +R+LLED++NVR+ K+  G+   A  V Q+      +Q+N++ A+E+ +VR     +L   Y +S + A D+
Sbjct:   63 NKCRILAPSWLSVDYLMSRLEREKASD-AFEELPFHYLEVASLLLKNAPEDLDQGEHLRSLLEDLQNVRQDKIRNGLSRIAGDVVQSGGSASVIQMNNISALEINSVREFMIGSLNQFYRLSRLNAEDD 190
[Close]
BLAST of mRNA_C-tenellus_contig1013.2.1 vs. uniprot
Match: A0A7S2D0T8_9STRA (DNA replication complex GINS protein PSF2 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D0T8_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 4.950e-18
Identity = 48/137 (35.04%), Postives = 81/137 (59.12%), Query Frame = 1 
Query:  148 PLSYGLLSSITN*TFSRCKIACPGWMTVSALEKVLREERDNDKSFTPLPHHYLEIASLLLNSASDDIVEADRVRTLLEDVENVRKAKMYEGMGAAAQQVNQ------AVQVNDLGAMELLTVRNCFAEALGNLYVVS 540
            P+   L  ++T     +CKI  P W+    L K+L  E+++  SF  LP HY+EIA+ L+ ++++DI + +RVRT+LED++N+R +K+  GM   A +V +      AV++ ++ A+EL  +R     AL   Y +S
Sbjct:   45 PVKVPLWLAVTLRKRQKCKIQPPSWIDYDHLSKILENEQNDLDSFQELPFHYIEIAASLIATSAEDIPDCERVRTILEDIQNLRWSKIRRGMQLIADKVKEDDERITAVKLTNVSALELHAIRPFMTGALNQFYRLS 181
[Close]
BLAST of mRNA_C-tenellus_contig1013.2.1 vs. uniprot
Match: A0A2G5EAN9_AQUCA (DNA replication complex GINS protein PSF2 n=2 Tax=Aquilegia coerulea TaxID=218851 RepID=A0A2G5EAN9_AQUCA)

HSP 1 Score: 89.4 bits (220), Expect = 5.480e-18
Identity = 48/112 (42.86%), Postives = 70/112 (62.50%), Query Frame = 1 
Query:  196 RCKIACPGWMTVSALEKVLREERDNDKSFTPLPHHYLEIASLLLNSASDDIVEADRVRTLLEDVENVRKAKMYEGMGAAAQQVNQAVQVNDLGAMELLTVRNCFAEALGNLY 531
            +C I  P WM+V  L +VL EERD+ + F PLP HY+EI+ LL + A +DI E   VR+L+ED+ +VR  K+  G+   + + + AV++ +L AME+  VR  F  AL   Y
Sbjct:   68 KCTIRPPPWMSVEKLTRVLEEERDSPREFQPLPFHYVEISKLLFDHAREDIPEVYMVRSLVEDIRDVRFHKVEIGLQKISSRTH-AVKLKNLSAMEVNIVRPFFVRALQAFY 178
[Close]
BLAST of mRNA_C-tenellus_contig1013.2.1 vs. uniprot
Match: A0A5J5ATC3_9ASTE (DNA replication complex GINS protein PSF2 n=3 Tax=Nyssaceae TaxID=4289 RepID=A0A5J5ATC3_9ASTE)

HSP 1 Score: 89.0 bits (219), Expect = 7.800e-18
Identity = 50/127 (39.37%), Postives = 78/127 (61.42%), Query Frame = 1 
Query:  196 RCKIACPGWMTVSALEKVLREERDNDKSFTPLPHHYLEIASLLLNSASDDIVEADRVRTLLEDVENVRKAKMYEGMGAAAQQVNQAVQVNDLGAMELLTVRNCFAEALGNLYVVSG---MKASDERA 567
            +C I  P WM+V  L +VL  ERD+++ F PLP HY+EI+ LL + A DDI E   VR+L+ED+++VR  K+  G+   +++ + A+++ +L AME+  VR     AL   Y +     ++ SD RA
Sbjct:   68 KCTIRPPEWMSVEKLTQVLEAERDSERFFQPLPFHYVEISRLLFDHARDDIPEVYMVRSLIEDIKDVRFHKIGTGLEIISERTH-ALKLKNLSAMEVNIVRPFVVRALQTFYKLDSPEMIQESDRRA 193
[Close]
BLAST of mRNA_C-tenellus_contig1013.2.1 vs. uniprot
Match: A0A161Y1D0_DAUCS (DNA replication complex GINS protein PSF2 n=2 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A161Y1D0_DAUCS)

HSP 1 Score: 88.2 bits (217), Expect = 1.170e-17
Identity = 48/112 (42.86%), Postives = 71/112 (63.39%), Query Frame = 1 
Query:  196 RCKIACPGWMTVSALEKVLREERDNDKSFTPLPHHYLEIASLLLNSASDDIVEADRVRTLLEDVENVRKAKMYEGMGAAAQQVNQAVQVNDLGAMELLTVRNCFAEALGNLY 531
            +C I  P WM+V  L +VL  ERD+ + F PLP HY+EIA LL + A DDI +   VR+L+ED+++VR  K+  G+   +++   AV++ +L AME+  VR   A+AL   Y
Sbjct:   44 KCTIRLPDWMSVEKLTQVLEAERDSARDFQPLPFHYVEIARLLFDHARDDIPDIYMVRSLIEDIKDVRFHKIGTGLEIISERT-YAVKLLNLSAMEVNIVRPFVAKALETFY 154
[Close]
BLAST of mRNA_C-tenellus_contig1013.2.1 vs. uniprot
Match: A0A833QQX9_9POAL (DNA replication complex GINS protein PSF2 n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833QQX9_9POAL)

HSP 1 Score: 88.6 bits (218), Expect = 1.310e-17
Identity = 47/112 (41.96%), Postives = 68/112 (60.71%), Query Frame = 1 
Query:  196 RCKIACPGWMTVSALEKVLREERDNDKSFTPLPHHYLEIASLLLNSASDDIVEADRVRTLLEDVENVRKAKMYEGMGAAAQQVNQAVQVNDLGAMELLTVRNCFAEALGNLY 531
            +C I  P WM+V  L +VL  ER++ + F PLP HY+EI+ LLL+ A DDI E   VR+L+ED+ NVR  K+  G+   + + + AV++ +L AME+  VR      L   Y
Sbjct:   68 KCSIRTPDWMSVEKLTQVLEAERESPREFQPLPFHYVEISRLLLDHAHDDIPEVYMVRSLIEDIRNVRFHKVESGLETISGRTH-AVKLKNLSAMEVNIVRPFMVRVLQAFY 178
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig1013.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G631_ECTSI5.000e-5774.42Sld5 domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A836CII2_9STRA1.050e-3454.33Sld5 domain-containing protein n=1 Tax=Tribonema m... [more]
A0A2D4C9F5_PYTIN3.830e-1936.50DNA replication complex GINS protein PSF2 n=1 Tax=... [more]
A0A6A3SX89_9STRA1.390e-1836.43DNA replication complex GINS protein PSF2 n=3 Tax=... [more]
G4ZBG3_PHYSP1.390e-1836.43DNA replication complex GINS protein PSF2 n=1 Tax=... [more]
A0A7S2D0T8_9STRA4.950e-1835.04DNA replication complex GINS protein PSF2 n=1 Tax=... [more]
A0A2G5EAN9_AQUCA5.480e-1842.86DNA replication complex GINS protein PSF2 n=2 Tax=... [more]
A0A5J5ATC3_9ASTE7.800e-1839.37DNA replication complex GINS protein PSF2 n=3 Tax=... [more]
A0A161Y1D0_DAUCS1.170e-1742.86DNA replication complex GINS protein PSF2 n=2 Tax=... [more]
A0A833QQX9_9POAL1.310e-1741.96DNA replication complex GINS protein PSF2 n=1 Tax=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig1013contigC-tenellus_contig1013:4201..6098 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G631
Preferred nameGINS2
PFAMsSld5
Model size768
Max annot lvl2759|Eukaryota
KEGG koko:K10733
KEGG ModuleM00286
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000278,GO:0000724,GO:0000725,GO:0000727,GO:0000785,GO:0000790,GO:0000811,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006271,GO:0006281,GO:0006302,GO:0006310,GO:0006323,GO:0006355,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007346,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0010564,GO:0016043,GO:0019219,GO:0019222,GO:0022402,GO:0022616,GO:0030261,GO:0031261,GO:0031298,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032784,GO:0032991,GO:0032993,GO:0033260,GO:0033554,GO:0034641,GO:0034645,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044786,GO:0045787,GO:0045931,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0051276,GO:0051716,GO:0051726,GO:0060255,GO:0065007,GO:0070013,GO:0071103,GO:0071162,GO:0071704,GO:0071840,GO:0080090,GO:0090068,GO:0090304,GO:1900087,GO:1901360,GO:1901576,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902292,GO:1902315,GO:1902806,GO:1902808,GO:1902969,GO:1902975,GO:1903047,GO:1903506,GO:2000045,GO:2000112,GO:2001141
Exons3
Evalue3.44e-53
EggNOG OGsCOG5093@1|root,KOG4071@2759|Eukaryota
Ec32 ortholog descriptionGINS complex
Ec32 orthologEc-11_004910.1
Descriptiondouble-strand break repair via break-induced replication
Cds size495
COG categoryKLT
BRITEko00000,ko00002,ko03032
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789116.7538033-UTR-C-tenellus_contig1013:4200..44221680789116.7538033-UTR-C-tenellus_contig1013:4200..4422Choristocarpus tenellus KU2346UTRC-tenellus_contig1013 4201..4422 +
1680789116.8027675-UTR-C-tenellus_contig1013:6047..60981680789116.8027675-UTR-C-tenellus_contig1013:6047..6098Choristocarpus tenellus KU2346UTRC-tenellus_contig1013 6048..6098 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789116.7660162-CDS-C-tenellus_contig1013:4422..45491680789116.7660162-CDS-C-tenellus_contig1013:4422..4549Choristocarpus tenellus KU2346CDSC-tenellus_contig1013 4423..4549 +
1680789116.7785742-CDS-C-tenellus_contig1013:4891..50011680789116.7785742-CDS-C-tenellus_contig1013:4891..5001Choristocarpus tenellus KU2346CDSC-tenellus_contig1013 4892..5001 +
1680789116.7906673-CDS-C-tenellus_contig1013:5789..60471680789116.7906673-CDS-C-tenellus_contig1013:5789..6047Choristocarpus tenellus KU2346CDSC-tenellus_contig1013 5790..6047 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig1013.2.1prot_C-tenellus_contig1013.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig1013 4423..6047 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig1013.2.1

>prot_C-tenellus_contig1013.2.1 ID=prot_C-tenellus_contig1013.2.1|Name=mRNA_C-tenellus_contig1013.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=165bp
MTVSALEKVLREERDNDKSFTPLPHHYLEIASLLLNSASDDIVEADRVRT
LLEDVENVRKAKMYEGMGAAAQQVNQAVQVNDLGAMELLTVRNCFAEALG
NLYVVSGMKASDERARELGEGSVGNDYGADAGIGVGVGVSDLGEGADGGT
SRLGGSRRVRRFRN*
back to top

mRNA from alignment at C-tenellus_contig1013:4201..6098+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig1013.2.1 ID=mRNA_C-tenellus_contig1013.2.1|Name=mRNA_C-tenellus_contig1013.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1898bp|location=Sequence derived from alignment at C-tenellus_contig1013:4201..6098+ (Choristocarpus tenellus KU2346)
GGGCGACTTTGGCCCTTTCGTGCCACAGACACGGGCAAAGGTGCCACTAT
GGCTTGCTGTCTCGTTGAAAAAGAGACAAAAGTGAGTGCTCTGAAAATCA
CAAGTTGTTATATGATTGACAATCTTCCTGAAAATGATTAAGTGTAGCCT
CTCTCGTATGGGCTCCTTTCATCAATAACCAACTGAACCTTCTCCAGGTG
CAAAATTGCCTGCCCGGGATGGATGACAGTGTCAGCGCTGGAAAAGGTTT
TGAGGGAAGAACGAGATAACGACAAGAGTTTCACGCCGCTCCCTCACCAT
TACCTCGAGATCGCTAGCCTCCTACTGAACTCCGCATCTGACGATATAGG
TATTGAAGGACCGATGTAGGTAGCTTCAGTCCTCTTCCAAGTTGCCTGAC
CACCCGAATAAATCATCTTATTTAAATTATACCTTGTTACAAAATAAATT
TATGTTTCATTGACAAGTGGATTGTCTAGAGTTGACTGATCAATACCTCG
CCTCCAAGAGTAGAAGAGGATCGTTGATATTGTCACTGCGTTTCCCCACA
GCACAGGTCTGTTATTGATTTCATGAGTCGAAATTTGGACTCAAAGCCAG
CAAGCACCAGCAGTATTAATTTCATTATCAATATGAGTAGCGGCTCTCGA
CCTCCCGACCTTGTCATCCCCGGGACCTCGTTTTCTTTCAGTGGAAGCAG
ATCGCGTGCGAACACTCCTGGAGGATGTGGAGAACGTAAGAAAAGCGAAG
ATGTACGAAGGCATGGGAGCAGCAGCACAGCAGGTCAACCAGGCCGTGCA
GGTAAGCCTTCTTCTCGAGTAGGAGCAAGGTTATGTTTCTTCTTCGACCT
GACCCTCAGTTGGAGGTGGAAGGATTGAAGGCTGATGTGTGCTTTAACAA
CATAATCTTGCATAGAAACAGGGTGCTGGAAATCTGCTCTAGGCCTTCAC
AGTGCACTTGGAAGTATCCTGTTTCACGTTCCCCCTAAATATTTTGGAGG
ATGGACTTAATTTGTTCTACTAAGCTGTAATTTCTAGTGGCATTTCCAAT
GCCCCCTCCCTCCAAAGACCCTTTCCCCAAAAGCTTTTGTCACGCTTTTA
AAAAATATTCTTGATGTGAAAGAGGTACCAGGCATCAGGATTAATGGTAC
CTATTGATAACAGTAACGTGGCCTGCATGTTTGTCAAGTTTGGCCAGTCA
TGTGACCTCTGCACTGTCAGGTATTGGTTAGGATTGTACACCATGTAGTT
TCACATGCACATGGAACTTTTTTGAAGATGGTGAATCAAGGTGTTGCTTG
GACACCCACATGGTACATACCGCCCACTGGGCCTTGTTGTATTAATATCT
GTTCATCTGTTCCTGCTTACGTATAAGCCACAACTGCAACACACCCTCCC
TCGCTACCTCTACCAAACCCAATGTACATATACCTTACACCTTTCAATTT
GGATGCAAACCATTCCTCCCCAAATCGCAACAACTTAAGTGATGTTGGCA
TGCTGACAAGTGCCTTATAACCTCATCTCAACGAAAAACTGTTTTTCTCC
CTTCCCCCCACCCTGACCATCCTCACCGTGTTGTACCAGGTGAATGACCT
TGGAGCAATGGAGCTGCTAACTGTTAGGAACTGCTTTGCTGAAGCACTTG
GCAACCTTTATGTTGTCAGTGGTATGAAGGCGTCCGATGAGCGGGCTAGA
GAGCTAGGAGAAGGCTCAGTGGGCAATGATTATGGAGCAGATGCAGGGAT
TGGGGTGGGGGTAGGGGTGTCAGACTTAGGGGAGGGTGCAGATGGAGGAA
CATCACGCCTGGGAGGATCGAGAAGGGTTCGACGATTCCGTAACTGACAG
GCCCGGCTCTTCTGTGTTTTTTTGTTGGTTGTACCCTACAGGATTTAT
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig1013:4201..6098+

>mRNA_C-tenellus_contig1013.2.1 ID=mRNA_C-tenellus_contig1013.2.1|Name=mRNA_C-tenellus_contig1013.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=495bp|location=Sequence derived from alignment at C-tenellus_contig1013:4201..6098+ (Choristocarpus tenellus KU2346)
ATGACAGTGTCAGCGCTGGAAAAGGTTTTGAGGGAAGAACGAGATAACGA
CAAGAGTTTCACGCCGCTCCCTCACCATTACCTCGAGATCGCTAGCCTCC
TACTGAACTCCGCATCTGACGATATAGTGGAAGCAGATCGCGTGCGAACA
CTCCTGGAGGATGTGGAGAACGTAAGAAAAGCGAAGATGTACGAAGGCAT
GGGAGCAGCAGCACAGCAGGTCAACCAGGCCGTGCAGGTGAATGACCTTG
GAGCAATGGAGCTGCTAACTGTTAGGAACTGCTTTGCTGAAGCACTTGGC
AACCTTTATGTTGTCAGTGGTATGAAGGCGTCCGATGAGCGGGCTAGAGA
GCTAGGAGAAGGCTCAGTGGGCAATGATTATGGAGCAGATGCAGGGATTG
GGGTGGGGGTAGGGGTGTCAGACTTAGGGGAGGGTGCAGATGGAGGAACA
TCACGCCTGGGAGGATCGAGAAGGGTTCGACGATTCCGTAACTGA
back to top