mRNA_C-tenellus_contig10079.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10079.1.1
Unique NamemRNA_C-tenellus_contig10079.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10079.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10079contigC-tenellus_contig10079:313..3405 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size924
Hectar predicted targeting categoryother localisation
Exons4
Cds size558
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10079.1.1prot_C-tenellus_contig10079.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10079 526..3252 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789113.9972541-UTR-C-tenellus_contig10079:312..5251680789113.9972541-UTR-C-tenellus_contig10079:312..525Choristocarpus tenellus KU2346UTRC-tenellus_contig10079 313..525 -
1680789114.0488248-UTR-C-tenellus_contig10079:3252..34051680789114.0488248-UTR-C-tenellus_contig10079:3252..3405Choristocarpus tenellus KU2346UTRC-tenellus_contig10079 3253..3405 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789114.0084205-CDS-C-tenellus_contig10079:525..7161680789114.0084205-CDS-C-tenellus_contig10079:525..716Choristocarpus tenellus KU2346CDSC-tenellus_contig10079 526..716 -
1680789114.0203888-CDS-C-tenellus_contig10079:2386..25881680789114.0203888-CDS-C-tenellus_contig10079:2386..2588Choristocarpus tenellus KU2346CDSC-tenellus_contig10079 2387..2588 -
1680789114.0295842-CDS-C-tenellus_contig10079:2914..30741680789114.0295842-CDS-C-tenellus_contig10079:2914..3074Choristocarpus tenellus KU2346CDSC-tenellus_contig10079 2915..3074 -
1680789114.0402246-CDS-C-tenellus_contig10079:3247..32521680789114.0402246-CDS-C-tenellus_contig10079:3247..3252Choristocarpus tenellus KU2346CDSC-tenellus_contig10079 3248..3252 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10079.1.1

>prot_C-tenellus_contig10079.1.1 ID=prot_C-tenellus_contig10079.1.1|Name=mRNA_C-tenellus_contig10079.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=186bp
MRSTSRSRTNNMALLGCQLDVRVPEEASFLSQPIPVEVFLMKDNELQHAS
NISLQVWLEEEFQSPVKAESSSGVTIQCVSSAGENGVGGGSRGGSGNKGD
TTPVIMNGVVKFNIIAEESAIHGHKVRVRVTSEQDQGLGNGLQLSGSSPE
FTLHKYMLTLGPQVDEPFYKDEGGKSKVKLLFAVI*
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mRNA from alignment at C-tenellus_contig10079:313..3405-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10079.1.1 ID=mRNA_C-tenellus_contig10079.1.1|Name=mRNA_C-tenellus_contig10079.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3093bp|location=Sequence derived from alignment at C-tenellus_contig10079:313..3405- (Choristocarpus tenellus KU2346)
TCGTTCCACTAGTTGGAGGCGAAACTTTGCTTGCTTCAACCAATCAACAA
GACATCCGCCCCATGATATTTGTTCCCAGAGAACTTGCGTCTGCGAGTAG
CGAGGGTGAAGTGGTCAGTGTTGAAGACCAACGATCTGACTCAGTTACTA
TTGATGAGGTGTGTGAAGATGTTAATGTAAGAATGCACTACTTCGTCACG
TTTCTCCGGATATGTTTGCACCTGATCACAAACCCCGTTCAATGAACCAA
CAACCTGTCCACTCAAATGCCATGCGTCATAATTGCAACGTCTCCTCCTA
TCCTTCGGCCTGAATTATATTTTCATCGTAGGAGCACATCGAGGTCCCGA
ACGAACAATATGGCACTGCTAGGATGCCAACTGGATGTCCGTGTCCCAGA
GGAAGCCTCCTTTCTTTCACAGCCCATCCCTGTCGAAGTTTTTCTAATGA
AGGACAACGAGTTGCAGCATGCTTCAAATATATCGTTGCAGGTGCGTATT
ATCATGACTGACTACTCACCTTTTACGCTATATGTGCTAATCTTTGATTT
ACCAATGAGTGATTAGTAGAGGGTGTGGAACACACTCCTCATCCCCCTCT
TTCTAGTTCCTCTACATTGAAGACCCCATCAACAATCCACGGTTCATTTT
GACTGATTATTTTGGATTTCATTCTAATCGTACCCCCCTTCATCCTCGAA
GTCCTTAAACCCTACCTCTTTACCTTACCAAGAACTTGGCCCTCCCTGTG
TGCTAATCTGCAACCCATGTACGCATGATACACCCCTTCACCATGCCACC
TGTTGTGGAGGAAATAGGTTTGGTTGGAGGAGGAATTCCAATCCCCAGTT
AAGGCGGAGTCATCGTCTGGCGTAACAATCCAATGTGTTTCTTCTGCGGG
CGAGAATGGGGTCGGGGGTGGTTCTAGAGGTGGTAGTGGGAACAAGGGCG
ACACCACCCCGGTTATAATGAATGGAGTGGTCAAGTTCAACATTATTGCA
GAAGAAAGTGCCATCCACGGTGAGTTGGTACTTCTACTTTGAATCCGTTT
ATTTCTTAATCTGTGAAGTGCCACGGTCGGAAACAGTTATTGCACCACAG
TGTGATGTACTGGAGGACTGATACTGCACATAGAGCGTTTCAGCAACAGT
GTTACATTCTTTTTAAAATATAGATGTTAAGTAGATTTATTTTTGTACTA
ACTAATTGATGGCGACAAAAATTTTTCATCGCACGTAGCTCACCTATCTT
CTTACTTTTTGTATGGACGATTTGTTTTGTGTCCATCTCAAGTCATTTGC
CGCTATACGCCATACTCCTTGAAGAGAAGAAGAAAAAACTACTGTGGCCA
AGCTGTGCATGCAGTCAACGTAAGTCGGAATGTACCGCGCCTACTATTCG
AGCAACTTCAATATCTCTTTCAATTTTTTTTGTGTATCGTGGCAAGAAAT
TTTGTAAAACATCTTTTTTTCTGTAAAATACAGAGTAACTCTGCTCTTGC
CTGCTATAGGTTGAACTCAATTCATGTCCCTTCTATATATATATATATTG
TTTTCAATGACAGTGGGCGGATCAAGCGGTAACATAATTTACCATACATG
TTGCTCTTTGATTTTGTTGTTCCAAACTTACTTCCTGTGATGCCTTACTT
ATTTTGTAATTTTCACCCTTCTTTCGGTAAATGTGTTACGCGTATATATA
TAGTATATATATATTTTGTGTGCGAATATGTATGTGCTCACTTGTATTGT
ACATGTGCATTGGGAAGACAATAAAGCTCAAGAGGATGACCCGATTGAGA
AGGCGTACGCAGCTTGGCCCTACCTTTTTTTTTTAGTTACGATACAAAAG
AGGAGAATACTCAGGTAGAAACTCAACTCAACAGTTGCGATTTTTTTTTT
AGTCAATAAAATCCTAAATTTCAGAACATTCTGTTAAGTTTCTGTTGTTT
GATCCTATCTTTCCCCTTAGGTCGTGCAGTTCATGGCAATGGTTAAAAAA
CATTATGAGGCCATTGGTAAGAATTTATGTTTGGAATGAATCATCAAATT
CGAGTATGCTGTTTCCTCTGTTCAGCATAAATTAGAACGGTTTGTGGTGT
AGGGTTTTAGGTACATGCACAAGATTGTATAAGATTTGTTCTGTACTTTA
TCAAGGTGTTGAAAAAATCATTATTGATACGGGGTCACCTCAAAATCTCT
GCAAACGCAACTTAGTCTTCCCATTCTACTCCGCCGGTTGCCAAGCTGCA
AGAAATGCCTTCCTGATGTAGTTTCCTCATCCCTGCAAACTGTTTCAAAT
GATGCTGAATGGATGAAGTACTGTAAAATATAATATTCTACATAAATGAG
AATGCAGTTATAAAAGTAGTCATTTTTTGAAAATAATGACAGAAAATGCT
GGATTTTTTTCTTTTTTTGAGATTGTGCAAAGCCTGTGAGTTGGCGTTTG
ATTTTCACTTGCAGAAAAGATGCATAATGCCTGACTGCCGGAAGAGGTAG
GTGCTGCTTCACCTACTTTACATTACAACGTCCCAGTACTTTACTGTATA
CCTCAACAGCTTAAATTTTTTTTGAATTATAAAAATAAATAAGTAGGTAC
TTCTTTGCCCACTCTACACTACAACGCCCAGTGCCTTACTAAATTTTACC
TTGACCGCTTCTTTTTGGAATAATAATAAAAAAAATAAGGTCACAAAGTT
CGGGTGAGGGTCACCAGTGAACAGGACCAGGGACTAGGGAATGGCCTACA
ACTGAGTGGTAGCAGTCCGGAGTTCACCCTGCATAAGTATATGCTGACTC
TTGGCCCACAGGTTGATGAGCCGTTCTACAAGGATGAGGGCGGAAAGAGC
AAGGTGAAACTGTTATTTGCAGTCATTTAAAAAAAGATGTTGACTGACGT
ACATTAATGTTTGATGTATGATGCAGTGTGGTGCTGGATTGTTTTTACAG
ATGACTATTATGGAGGTAGAGAACAGTTTGCGAAATGCTCGAGCCCCCCT
CCCCTCATTTTTTTTCCAAAGACAAAAAAAAATTATAGAAGGAAAAAAAG
CAGAAATGTTATTAAGAGAGAGGCTTGGGCGTATTGAGATAGA
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Coding sequence (CDS) from alignment at C-tenellus_contig10079:313..3405-

>mRNA_C-tenellus_contig10079.1.1 ID=mRNA_C-tenellus_contig10079.1.1|Name=mRNA_C-tenellus_contig10079.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=558bp|location=Sequence derived from alignment at C-tenellus_contig10079:313..3405- (Choristocarpus tenellus KU2346)
ATGAGGAGCACATCGAGGTCCCGAACGAACAATATGGCACTGCTAGGATG
CCAACTGGATGTCCGTGTCCCAGAGGAAGCCTCCTTTCTTTCACAGCCCA
TCCCTGTCGAAGTTTTTCTAATGAAGGACAACGAGTTGCAGCATGCTTCA
AATATATCGTTGCAGGTTTGGTTGGAGGAGGAATTCCAATCCCCAGTTAA
GGCGGAGTCATCGTCTGGCGTAACAATCCAATGTGTTTCTTCTGCGGGCG
AGAATGGGGTCGGGGGTGGTTCTAGAGGTGGTAGTGGGAACAAGGGCGAC
ACCACCCCGGTTATAATGAATGGAGTGGTCAAGTTCAACATTATTGCAGA
AGAAAGTGCCATCCACGGTCACAAAGTTCGGGTGAGGGTCACCAGTGAAC
AGGACCAGGGACTAGGGAATGGCCTACAACTGAGTGGTAGCAGTCCGGAG
TTCACCCTGCATAAGTATATGCTGACTCTTGGCCCACAGGTTGATGAGCC
GTTCTACAAGGATGAGGGCGGAAAGAGCAAGGTGAAACTGTTATTTGCAG
TCATTTAA
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