mRNA_C-tenellus_contig10055.1.2 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig10055.1.2 vs. uniprot
Match: D7FIK1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIK1_ECTSI) HSP 1 Score: 300 bits (768), Expect = 6.700e-94 Identity = 164/232 (70.69%), Postives = 194/232 (83.62%), Query Frame = 2 Query: 329 VPGLGFVADTLKEFLDWVEDNPGEGFVAFAAVYVLTTVCFIPGSLLTLGAGLAFGRALGI*LGVLLGSAAVLLGATIGALLAFLLGRYVLQQQAQGLFNTFKILQAVNKAIETQGLKLVLLLRLSPVVPFSAFNHVMGLTKVSFRDYALGCFGFIPGTVAYVFIGTSASHLLGGEDNDDMDKDGGNK-TVQQIVIVVGVIATIIAIVLISVYAKQALSEALKDVEEDGIEGE 1021 VPGLGFVADTL FL+WVEDNPG G +AFA VYV TTVCFIPGSLLTLGAGL FGRALG LG+L+GS AVL GAT+G++LAFLLGR+VLQ+QAQGLFN FK+L+AVN+AI++QGLKLV+LLRLSPVVPFSAFN+VMG+T V FRDYA+GC GFIPGTVA+VFIGT+AS LLG + + TVQ IV +VG IAT+IA+VLIS+YAK+AL++ L EED +E E Sbjct: 64 VPGLGFVADTLTSFLEWVEDNPGLGALAFALVYVFTTVCFIPGSLLTLGAGLVFGRALGTGLGILVGSLAVLAGATVGSILAFLLGRFVLQEQAQGLFNKFKVLKAVNRAIKSQGLKLVILLRLSPVVPFSAFNYVMGVTDVFFRDYAIGCVGFIPGTVAFVFIGTTASGLLGDDSEEXXXXXXXXXGTVQLIVGIVGGIATVIAVVLISIYAKRALNKVL---EEDRVEQE 292
BLAST of mRNA_C-tenellus_contig10055.1.2 vs. uniprot
Match: A0A7S2Y1P9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1P9_9STRA) HSP 1 Score: 265 bits (677), Expect = 1.380e-80 Identity = 154/245 (62.86%), Postives = 184/245 (75.10%), Query Frame = 2 Query: 326 QVPGLGFVADTLKEFLDWVEDNPGEGFVAFAAVYVLTTVCFIPGSLLTLGAGLAFGRALGI*LGVLLGSAAVLLGATIGALLAFLLGRYVLQQQAQGLFNTFKILQAVNKAIETQGLKLVLLLRLSPVVPFSAFNHVMGLTKVSFRDYALGCFGFIPGTVAYVFIGTSASHLLGGEDNDD------MDKDG-----GNKTVQQIVIVVGVIATIIAIVLISVYAKQALSEALKDVE-EDGIEGED 1024 VP LG V L +FL WVEDNP EG AFA VY+ TV FIPGSLLTLGAGL FGRALGI GV LGS AV+LGA+IGA++AF+LGRYVLQ AQ LFN FKI++AV+KAIE+QGLKL LLLRLSPVVPF+AFN++MGLT +S +DY +GC G IPGTVAYVFIG+SAS + + ND+ D DG N TV IVI+VG IAT+IA+ LIS YAK+AL+ L +VE E+ +G+D Sbjct: 45 SVPSLGNVNIVLSDFLAWVEDNPIEGVFAFACVYMFCTVAFIPGSLLTLGAGLVFGRALGIGRGVALGSFAVILGASIGAIIAFILGRYVLQDTAQVLFNKFKIMRAVDKAIESQGLKLCLLLRLSPVVPFNAFNYIMGLTAISLKDYTIGCLGIIPGTVAYVFIGSSASGIGDMKGNDEEQNDNTKDADGEESSSDNDTVFLIVIIVGAIATVIAVFLISWYAKKALNRILNEVELEENQDGKD 289
BLAST of mRNA_C-tenellus_contig10055.1.2 vs. uniprot
Match: A0A7S3YEX9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YEX9_HETAK) HSP 1 Score: 223 bits (568), Expect = 1.440e-64 Identity = 127/232 (54.74%), Postives = 157/232 (67.67%), Query Frame = 2 Query: 329 VPGLGFVADTLKEFLDWVEDNPGEGFVAFAAVYVLTTVCFIPGSLLTLGAGLAFGRALGI*LGVLLGSAAVLLGATIGALLAFLLGRYVLQQQAQGLFNTFKILQAVNKAIETQGLKLVLLLRLSPVVPFSAFNHVMGLTKVSFRDYALGCFGFIPGTVAYVFIGTSASHLLGGEDNDDMDKDGGN------------KTVQQIVIVVGVIATIIAIVLISVYAKQALSEAL 988 +P LG V L FL WVE++PGEG VAFA+VYVLTTV FIPGS+LTLGAGL FGRAL +AFLLGRYVLQ AQ LFN F +L+AV+KAIE +GL+LV+LLRLSPV+PFSAFN+VMGLT+V FR Y LGC G +PGTVAYVFIGTSA+ LLG D+ + + + V +V+VVG AT++A+VLI+V +++AL L Sbjct: 70 LPSLGHVNRILTSFLLWVEEHPGEGVVAFASVYVLTTVLFIPGSILTLGAGLVFGRALXXXXXXXXXXXXXXXXXXXXXXIAFLLGRYVLQDSAQKLFNKFSVLKAVDKAIENEGLRLVILLRLSPVIPFSAFNYVMGLTRVMFRQYVLGCVGMLPGTVAYVFIGTSAAGLLGDADDGSQESEXXXXXXXXXXXXXXXRLVNIVVLVVGAAATVLAVVLITVASRRALRRVL 301
BLAST of mRNA_C-tenellus_contig10055.1.2 vs. uniprot
Match: A0A6H5JID7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JID7_9PHAE) HSP 1 Score: 204 bits (520), Expect = 5.670e-57 Identity = 109/223 (48.88%), Postives = 156/223 (69.96%), Query Frame = 2 Query: 347 VADTLKEFLDWVEDNPGEGFVAFAAVYVLTTVCFIPGSLLTLGAGLAFGRALGI*LGVLLGSAAVLLGATIGALLAFLLGRYVLQQQAQGLFNTFKILQAVNKAIETQGLKLVLLLRLSPVVPFSAFNHVMGLTKVSFRDYALGCFGFIPGTVAYVFIGTSASHLLGGEDNDDMDKDGGNKT---VQQIVIVVGVIATIIAIVLISVYAKQALSEALKDVEED 1006 V L+ +W+EDNP G V FA ++ L+T+ F+PG LLT+GAG+AFGRALG GVL GS AVLLGA + ++AF LGRYVL +QAQ ++IL AVN AIE G+K+++LLRLSP+VPFS FN + GLTKVS RDY LG G +PGT+A+V+IG S + + + + M+ ++T ++ ++VG +A ++AIV +++YA++AL +AL + E D Sbjct: 89 VRTWLETSFEWIEDNPKAGVVVFALLFCLSTLLFVPGLLLTIGAGVAFGRALGFGFGVLWGSVAVLLGAVVACVIAFYLGRYVLHEQAQSCAKRYRILSAVNTAIERNGVKVMILLRLSPLVPFSGFNFIAGLTKVSLRDYLLGTVGIVPGTLAFVYIGASTAGTM--NEQEAMNSGEADRTECIIRMATLIVGAVAAVLAIVAVTIYARRALKQALVESELD 309
BLAST of mRNA_C-tenellus_contig10055.1.2 vs. uniprot
Match: A0A7S4JVV3_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JVV3_9STRA) HSP 1 Score: 195 bits (496), Expect = 2.180e-54 Identity = 103/221 (46.61%), Postives = 152/221 (68.78%), Query Frame = 2 Query: 341 GFVADTLKEFLDWVEDNPGEGFVAFAAVYVLTTVCFIPGSLLTLGAGLAFGRALGI*LGVLLGSAAVLLGATIGALLAFLLGRYVLQQQAQGLFNTFKILQAVNKAIETQGLKLVLLLRLSPVVPFSAFNHVMGLTKVSFRDYALGCFGFIPGTVAYVFIGTSASHLLGGEDNDDMDKDGGNKTVQQIVIVVGVIATIIAIVLISVYAKQALSEALKDVEE 1003 G++ D ++ FL W+E+NP EGF F VYVL TV F+PG +LTLGAG F A G LG+ +G+ +V +GA++G++LAFL+ RY+L++ A GL F I +A+++A+E +GLK+++LLRLSPV+PF+A N+V G+T VSF+DY+L F +PGT+ YVF+G SA L + D +K + +VVGV+ I+A+ L S YAK+ L++ L EE Sbjct: 40 GYIKDGIQTFLRWIEENPIEGFFMFMGVYVLATVLFVPGLILTLGAGYVFSNAFGTGLGLFVGTISVFVGASLGSMLAFLISRYILREWAVGLTEKFPIFRAIDQALEEKGLKIIILLRLSPVIPFNALNYVCGVTAVSFKDYSLALFAMLPGTILYVFLGASAQSLATIGSSTD------SKALTISTVVVGVVLGIVAVALSSRYAKKELNKILDQEEE 254
BLAST of mRNA_C-tenellus_contig10055.1.2 vs. uniprot
Match: A0A7S2JYW7_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JYW7_9STRA) HSP 1 Score: 188 bits (478), Expect = 8.640e-52 Identity = 102/230 (44.35%), Postives = 148/230 (64.35%), Query Frame = 2 Query: 335 GLGFVADTLKEFLDWVEDNPGEGFVAFAAVYVLTTVCFIPGSLLTLGAGLAFGRALGI*LGVLLGSAAVLLGATIGALLAFLLGRYVLQQQAQGLFNTFKILQAVNKAIETQGLKLVLLLRLSPVVPFSAFNHVMGLTKVSFRDYALGCFGFIPGTVAYVFIGTSASHLLGGEDNDDMDKDGGNKTVQQIVIVVGVIATIIAIVLISVYAKQALSEALKDVEEDGIEGED 1024 G G V T+++FLDWVEDNP EG AF VY + TV FIPG++LTLGAG F A G+ +GVLL S AV +GA+ GAL +FLLGRY+L+ L + +++ A++ A+ G K++ LLRLSP++PF+A N++ G+T VSFRD AL +PGTV YVF+G+SA L D + G ++T I +V G++ ++ I S YAK+ L+ + + + ++ ED Sbjct: 42 GDGRVTSTVEDFLDWVEDNPAEGVFAFIGVYFVATVLFIPGTILTLGAGFVFSSAFGLGVGVLLASIAVFVGASSGALASFLLGRYLLRDWVMTLTSKYQLFGAIDTALTNNGFKIMSLLRLSPIIPFNALNYIAGVTSVSFRDNALALLFILPGTVMYVFLGSSAGSL------SDSESSGDDQTTTIITVVFGIVFGLLGIAATSYYAKKELNAVIAQQDGERVDAED 265
BLAST of mRNA_C-tenellus_contig10055.1.2 vs. uniprot
Match: A0A7S2A6Q3_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A6Q3_TRICV) HSP 1 Score: 189 bits (481), Expect = 1.130e-51 Identity = 101/230 (43.91%), Postives = 149/230 (64.78%), Query Frame = 2 Query: 341 GFVADTLKEFLDWVEDNPGEGFVAFAAVYVLTTVCFIPGSLLTLGAGLAFGRALGI*LGVLLGSAAVLLGATIGALLAFLLGRYVLQQQAQGLFNTFKILQAVNKAIETQGLKLVLLLRLSPVVPFSAFNHVMGLTKVSFRDYALGCFGFIPGTVAYVFIGTSASHLLGGEDNDDMDKDGGNKTVQQIVIVVGVIATIIAIVLISVYAKQALSEALKDVEEDGIEGEDKV 1030 GFV ++ L W+E+NP G F AVY + TV F+PGSLLTLG+G F + G+ GVLL + AV +GAT+GAL+AF+LGRY+L+ + L + + +A++KA+E +GL++++LLRLSP++PF+A N++ G+T VSF+ YA F +PGT+ +VF+G SA L+ D G V IVVGV+ +IAI L S YAK+ L++ L+ + D E D + Sbjct: 68 GFVKGAIEGLLQWIEENPIRGLFVFMAVYFVATVLFVPGSLLTLGSGFVFAESFGLGFGVLLATLAVFVGATLGALVAFILGRYLLRDWVENLTKKYNVFRAIDKALEEKGLRIMILLRLSPIIPFNALNYICGVTSVSFKHYAWANFAILPGTILFVFLGASAGSLV------DSGNGGDTPVVTIATIVVGVVFGVIAIALTSRYAKKELNKILEQEKTDETERTDNI 291
BLAST of mRNA_C-tenellus_contig10055.1.2 vs. uniprot
Match: A0A7S2PDT1_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PDT1_9STRA) HSP 1 Score: 186 bits (473), Expect = 5.430e-51 Identity = 102/214 (47.66%), Postives = 138/214 (64.49%), Query Frame = 2 Query: 335 GLGFVADTLKEFLDWVEDNPGEGFVAFAAVYVLTTVCFIPGSLLTLGAGLAFGRALGI*LGVLLGSAAVLLGATIGALLAFLLGRYVLQQQAQGLFNTFKILQAVNKAIETQGLKLVLLLRLSPVVPFSAFNHVMGLTKVSFRDYALGCFGFIPGTVAYVFIGTSASHLLGGEDNDDMDKDGGNKTVQQIVIVVGVIATIIAIVLISVYAKQAL 976 G G V DT+ +FL WVEDNP EG AF VY + TV FIPG++LTLGAG F A G+ GVLL SAAV +GA+ GA+ +FLLGRY+LQ L + + +A++ A+ G K++ LLRLSP++PF+A N++ G+T +SFRD L F +PGT+ YVF+G+SA L D + G ++T I +V GVI +AI S YAK+ L Sbjct: 45 GEGRVTDTVDDFLQWVEDNPTEGVFAFIGVYFVATVLFIPGTILTLGAGFVFSSAFGLGPGVLLASAAVFVGASTGAIASFLLGRYLLQDWVTTLTQKYTVFEAIDGALTHNGFKIMSLLRLSPIIPFNALNYIAGVTSISFRDNTLALFFILPGTILYVFLGSSAGSL------SDSESSGSDQTTTIITVVFGVIFGFLAIAATSYYAKKEL 252
BLAST of mRNA_C-tenellus_contig10055.1.2 vs. uniprot
Match: D7G9F3_ECTSI (Hypothetical UPF0043 protein slr0305 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9F3_ECTSI) HSP 1 Score: 186 bits (471), Expect = 8.630e-51 Identity = 95/169 (56.21%), Postives = 122/169 (72.19%), Query Frame = 2 Query: 347 VADTLKEFLDWVEDNPGEGFVAFAAVYVLTTVCFIPGSLLTLGAGLAFGRALGI*LGVLLGSAAVLLGATIGALLAFLLGRYVLQQQAQGLFNTFKILQAVNKAIETQGLKLVLLLRLSPVVPFSAFNHVMGLTKVSFRDYALGCFGFIPGTVAYVFIGTSASHLLGGE 853 V L+ DW+EDNP G V FA ++ L+T+ F+PG LLT+GAG+AFGRALG GVL GS AVLLGA + ++AF LGRYVL +QAQ ++IL AVN AIE G+K+++LLRLSP+VPFS FN + GLTKVS RDY LG G +PGT+A+V+IG S + + E Sbjct: 89 VRTWLETSFDWIEDNPKAGVVVFALLFCLSTLLFVPGLLLTIGAGVAFGRALGFGFGVLWGSVAVLLGAVVACVIAFYLGRYVLHEQAQSCAKRYRILSAVNTAIERNGVKVMILLRLSPLVPFSGFNFIAGLTKVSLRDYLLGTVGIVPGTLAFVYIGASTAGTMNEE 257
BLAST of mRNA_C-tenellus_contig10055.1.2 vs. uniprot
Match: A0A0G4EY60_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EY60_VITBC) HSP 1 Score: 184 bits (467), Expect = 1.580e-49 Identity = 108/229 (47.16%), Postives = 150/229 (65.50%), Query Frame = 2 Query: 347 VADTLKEFLDWVEDNPGEGFVAFAAVYVLTTVCFIPGSLLTLGAGLAFGRALGI*LGVLLGSAAVLLGATIGALLAFLLGRYVLQQQAQGLFNTFKILQAVNKAIETQGLKLVLLLRLSPVVPFSAFNHVMGLTKVSFRDYALGCFGFIPGTVAYVFIGTSASHLLGGEDNDDMDKDGGNKTVQQIVIVVGVIATIIAIVLISVYAKQAL-----SEALKDVEEDGIEG 1018 VA+ L F +WV+DNP G +A+ AVY++ TV FIPGS+LTLGAG F A G G+ G AVL+GA +GA LAF GR++ + QGL + FK+++A++K ETQGLKL +LLRLSPVVPFSAFN++MG T+ +RDYA+G G IPGT YV+IG A G + + G Q + + VG++AT IA+ +++ +A++AL EA + + DG EG Sbjct: 79 VAEGLDIFKEWVQDNPATGILAYMAVYMVCTVAFIPGSILTLGAGFTFVCAFGNGPGMAAGIGAVLVGAFVGAQLAFFCGRFLFKSWVQGLTDKFKVMRAIDKVFETQGLKLNILLRLSPVVPFSAFNYIMGGTRTRYRDYAIGTLGIIPGTALYVYIG--AIPAFAGACSGKAE--GSGHWSQWVFLAVGLVATFIAVFIVTWFARKALREITEKEAAEASKADGKEG 303 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10055.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig10055.1.2 >prot_C-tenellus_contig10055.1.2 ID=prot_C-tenellus_contig10055.1.2|Name=mRNA_C-tenellus_contig10055.1.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=147bp MGLTKVSFRDYALGCFGFIPGTVAYVFIGTSASHLLGGEDNDDMDKDGGNback to top mRNA from alignment at C-tenellus_contig10055:969..4138+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig10055.1.2 ID=mRNA_C-tenellus_contig10055.1.2|Name=mRNA_C-tenellus_contig10055.1.2|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3170bp|location=Sequence derived from alignment at C-tenellus_contig10055:969..4138+ (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig10055:969..4138+ >mRNA_C-tenellus_contig10055.1.2 ID=mRNA_C-tenellus_contig10055.1.2|Name=mRNA_C-tenellus_contig10055.1.2|organism=Choristocarpus tenellus KU2346|type=CDS|length=441bp|location=Sequence derived from alignment at C-tenellus_contig10055:969..4138+ (Choristocarpus tenellus KU2346)back to top |