mRNA_C-tenellus_contig10010.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10010.1.1
Unique NamemRNA_C-tenellus_contig10010.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10010.1.1 vs. uniprot
Match: D7FT52_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT52_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 1.850e-33
Identity = 64/104 (61.54%), Postives = 80/104 (76.92%), Query Frame = 3 
Query:    3 YPCGQMMGDEKSKATVDALMGGFLSGVSKYSLERGVATSVLNGKADLVRQVVQAYPQLKNENLTFGYKIEYKGLEEKMGKQQIKDITSDMTMGPLDKMKNMIGF 314
            YPCG M GD+K+KATVDA++ G L  VSKYSLE+GVA+SVL  + DLVRQV  AYPQ+  + LTFG+K+ Y  LE KMGKQ++ +IT DMT+GPLD  K  +GF
Sbjct:  113 YPCGLMQGDDKAKATVDAMISGLLKDVSKYSLEKGVASSVLANRKDLVRQVSSAYPQIAGKELTFGFKVIYADLEAKMGKQEVTEITKDMTLGPLDAFKKKMGF 216
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BLAST of mRNA_C-tenellus_contig10010.1.1 vs. uniprot
Match: A0A836CMT2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMT2_9STRA)

HSP 1 Score: 104 bits (259), Expect = 6.200e-22
Identity = 55/107 (51.40%), Postives = 73/107 (68.22%), Query Frame = 3 
Query:    3 YPCGQMMGDEKSKATVDALMGGFLSGVSKYSLERGVATSVLNG-KADLVRQVVQAYPQLKNE--NLTFGYKIEYKGLEEKMGKQQIKDITSDMTMGPLDKMKNMIGF 314
            YPCG + GDE+SKATVDAL  GFLS + + +LE+GVA SVL   K+ L   + + YPQL  E  NL FG+K++Y  LEEK+G Q+I  +T +M +G  DK+K   GF
Sbjct:  108 YPCGALGGDERSKATVDALSNGFLSDLYRNALEKGVAESVLGPQKSQLKGSITRMYPQLAKEASNLEFGFKVKYAPLEEKLGPQKITLLTEEMKLGAFDKLKKNFGF 214
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BLAST of mRNA_C-tenellus_contig10010.1.1 vs. uniprot
Match: A0A7S2WK66_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WK66_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 5.860e-17
Identity = 49/111 (44.14%), Postives = 71/111 (63.96%), Query Frame = 3 
Query:    3 YPCGQMMGDEKSKATVDALMGGFLS--GVSKYSLERGVATSVLNGKAD--LVRQVVQAYPQLK--NENLTFGYKIEYKGLEEKMGKQQIKDITSDMTMGPLDKMKNMIGFK 317
            YPCG M GD ++K  V+  +   L   G+ K +++R VA+S+  G  D  LV QV Q YP LK    +L FGYK+ ++GLE+ +GKQ+I+ +T DM  GPLDK+K+  G +
Sbjct:  150 YPCGSMKGDSRAKQLVEGWVANSLGMGGMVKGNIDRSVASSIFTGGNDKNLVDQVCQMYPALKPAKNDLQFGYKVVFEGLEDSVGKQEIQVLTPDMKEGPLDKLKSAFGME 260
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BLAST of mRNA_C-tenellus_contig10010.1.1 vs. uniprot
Match: A0A0G4GEJ4_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GEJ4_VITBC)

HSP 1 Score: 62.8 bits (151), Expect = 3.320e-7
Identity = 36/104 (34.62%), Postives = 66/104 (63.46%), Query Frame = 3 
Query:    3 YPCGQMMGDEKSKATVDALM-GGFLSGVSKYSLERGVATSVLNG--KADLVRQVVQAYPQLKNENLTFGYKIEYKGLEEKM---GKQ-QIKDITSDMTMGPLDK 293
            +P G + GD+K++A  ++++ GGFL+   + +L +GVA S+ +     + ++ + Q+  +L  + L FGY++EYK LEEK+   GK+ +I  +T+DM  G + K
Sbjct:  153 FPAGMLKGDDKARALANSVVNGGFLATQYQNTLNQGVAKSLFSSAENQERLKDIAQSQYKLNRDALEFGYRLEYKALEEKLKEEGKENEIIQVTADMQEGAVKK 256
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10010.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FT52_ECTSI1.850e-3361.54Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CMT2_9STRA6.200e-2251.40Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2WK66_9STRA5.860e-1744.14Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A0G4GEJ4_VITBC3.320e-734.62Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10010contigC-tenellus_contig10010:2214..5698 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FT52
Model size1598
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.72e-34
EggNOG OGs2C200@1|root,2S7SE@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-19_003560.1
Cds size303
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789110.1597474-UTR-C-tenellus_contig10010:2213..34911680789110.1597474-UTR-C-tenellus_contig10010:2213..3491Choristocarpus tenellus KU2346UTRC-tenellus_contig10010 2214..3491 -
1680789110.2082138-UTR-C-tenellus_contig10010:5681..56981680789110.2082138-UTR-C-tenellus_contig10010:5681..5698Choristocarpus tenellus KU2346UTRC-tenellus_contig10010 5682..5698 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789110.174051-CDS-C-tenellus_contig10010:3491..35871680789110.174051-CDS-C-tenellus_contig10010:3491..3587Choristocarpus tenellus KU2346CDSC-tenellus_contig10010 3492..3587 -
1680789110.1832125-CDS-C-tenellus_contig10010:3855..39271680789110.1832125-CDS-C-tenellus_contig10010:3855..3927Choristocarpus tenellus KU2346CDSC-tenellus_contig10010 3856..3927 -
1680789110.195445-CDS-C-tenellus_contig10010:5546..56811680789110.195445-CDS-C-tenellus_contig10010:5546..5681Choristocarpus tenellus KU2346CDSC-tenellus_contig10010 5547..5681 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10010.1.1prot_C-tenellus_contig10010.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10010 3492..5681 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10010.1.1

>prot_C-tenellus_contig10010.1.1 ID=prot_C-tenellus_contig10010.1.1|Name=mRNA_C-tenellus_contig10010.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=101bp
MMGDEKSKATVDALMGGFLSGVSKYSLERGVATSVLNGKADLVRQVVQAY
PQLKNENLTFGYKIEYKGLEEKMGKQQIKDITSDMTMGPLDKMKNMIGFK
*
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mRNA from alignment at C-tenellus_contig10010:2214..5698-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10010.1.1 ID=mRNA_C-tenellus_contig10010.1.1|Name=mRNA_C-tenellus_contig10010.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3485bp|location=Sequence derived from alignment at C-tenellus_contig10010:2214..5698- (Choristocarpus tenellus KU2346)
GGTATCCTTGTGGGCAAATGATGGGAGATGAGAAATCCAAGGCTACGGTG
GATGCCCTCATGGGTGGGTTTTTGAGCGGGGTTTCAAAGTACTCTTTGGA
GAGAGGGGTGGCTACCTCGGTTCTTAATGGGAAGGCCGATCTCGTCAGAC
AGGTTTGTTTTTATGTTTTGGGTTACATTTTTTGTGCTTGAGATTTTCAC
GGGAGCAGAGGGCACGTTCTTTTTCTGAAACATAAGTAAAAGGTATTTTT
TGTCTCTTAATGTGCTATCTGCTCTGCTCCTTAGAAGGGGATTCTTATTT
GTGGAAGGAACTACTACTGTGGCGAATGTGCTGAAAATGTATGCCCTGTT
AAGGTGTAATTCTTAAAGAAAGGCTTGCCTCAATGTGTCAGTCTATGCTA
GTTGTTGATGGGCATATGAATGTAAGCCCCGTAGACAGGTAGGTTTCTGT
TGAGATGCATGCAGGGTATTGTTTGTACCAAGGGGGGAGCAAGGCCTAGG
AAGAGAGAGAAGAGATGCTGGAAATACTAGTGCATGACATGCCCGGGGGG
TTAATATTTGGAGAGAACCAGGGCTAATGCATTCCAGCAGGTTTTTGGTT
ATGAGGCAAATGTACAATTGCTCAGTCAAGCACTTGCTAGCGGCTATGCG
TTTTTACTGGTATTTGGGCATGTAAAAATGTTATGTTGTTACTTTTGTCT
GAATGTGGTCGGTTTGATGGCTGAGTAAAATCTTGGAATGGAGAAAGTTT
GAACGGGTGCGCTTCAACAAGTACCTCCTTTATCTCATCTGTGACCAGAA
CTGTTACATGTCAAGTTGTAATTATGTCAAGACTAGGATGACTCCCTCTT
TTTTGGGGCGATTGTGGCTGTGTTCCAGAAAGCACACACGTGATGATGAT
TGCCCCAAACCCCACATAGACTCTGCAAGGGCTGGTTTCAAGGGAACCAT
CTGAGCATGACAGTTTGTCTAGGAAAAAATGACTTCAATAAATTGTTTGG
GATAAATTTGTCATGTGTGTGTGTTCTCTAATTTTGATGAGCTATTATGA
ATCTGTAGTTTGGTGACCACAAAATGATCTATGTATTGACAGTCCCTCTC
AATGGGATCCAATTCCCATTATTTTAAGCATTCAAGGATTATTAGCCAAT
ACTATATTTGATTGTTTTTATGTTTTATGGTCATCTAGGGAGGATTAGTA
CTGCAGTTCTGACCTAGCCCTGTGAGCATCAATGTCCAGCAATCTGTTGT
ACAGCTATGTGTTTTGATGTTATTTCTTGCCTGTGTTGAATGAATTCATC
TGTGAGAGGTATCATCAAAGAGTCTGAACTTTGTTACTTTCCTGCAGCAA
GCTTTTGTGTGGAAGTGGAAACGTGGCTTTCACGCCCTCTTCTCTCGTCC
TGTGGCTATCATGTCTATATTGGAATTGAGTGCAAGGGATAGAGATGAAT
GATCAGAAAGTACATACATGCATATATTCTGATAACCTTCTCTCAAACTG
TATGGAACTGTCAGGTGTGCTATGTTGTGGTTCTGAGGGTATGATTTTTT
GTACAATTTTAGGTATCTCTGCGTGTCTGTCTTGAGTAACATATCGTTGA
AGAGGATTTTTTGCATGTGTTCCTTGATTCGAGTGGAGTCTTGTAATGCT
GTATGTACCAGTCAGGAAATGTTAGGGTTGATGTATGTATGGAAGTGTTT
TATCTCACTCCTGGTACATATTTTTGTCTGTGATGCCCATTCGTTGGATG
GTGTTTCTTGACATGGGACAGGTGGTACAAGCGTACCCACAGCTAAAGAA
TGAGAACCTCACATTTGGCTACAAGATTGAATACAAGGGACTGGTGAGGA
AGGGTATTGTACTAGAAGTGTGAAGGAAATAAGACTCAAGGTTGATGACT
GTTGTTGTTTTGTGCTTGCTCTGTGTTGATATTTGAATTTGAAATTGAAG
ATGTCTGATTTTGAATTTGATGATTGCTTGCAGTAGAGATACCAAATGCT
TCCTCATGATGTTTTCAATTTTTAATGCCCTGATCATGAACATGGCCATG
AGCTCCATCCATTATATGATAGTCTAACACACGCACGCGCATACACACTT
CTTTGTGTCAGGAGGAGAAGATGGGAAAGCAACAGATCAAGGACATCACC
AGTGATATGACAATGGGACCCCTTGACAAAATGAAGAACATGATAGGCTT
CAAGTGAGGAGCAACCAGAGGTGGCATCAAGTTCACAAACCAATCTTGTT
GAAATAGATACACATTTCGGATATTTGGGGGGGCGCGACTGCTGCTCAGC
AACCTTGCACATGGGTGTCTGCGAGCCTTAGAGTGCTCTTGCGTGAGCTG
ATAAAATTTTGTACATCTGTGTACTAGCCTGTCTTTGAGGTGGGTTGAAA
GAGGGGTATGGCCTGCTTGTAAGATGCGAACACAAGTTGGAGAGCTTATT
ATCTGTCAACGCAACGATAAGCGTGGTGTTTGTTTTGCTAGCTCTTTTGA
AGGGAGGTACCGGTGATGTGCATGGAGTTTTTCAAATAGAGGTGTGTCTA
GATCTCTCTGCTTGGTAGAGTGTTCTAAAGGGCTCCCACTACATGATGTG
TATGCTGTAGATGCCCCAGTTGCTTGTGTTGGTGGCTGCTGTGTATGACT
CCTTGTTGTGCGTCTGTGATTGACATGTGGGTCTAAGAGGAGAGGACCAC
CTAGGTACCGAGGGGAGGAGGTATGGTTGCATTCGTACCTACCTGTGTGA
CTGCCTGATAGATTATTTTGTAAGAAGAGGATGACAGGCCCAGGTCTAGG
ATGTTTCGACAACAAATATTTCGTTTTGTGAAGTGTGCAAAATCATGCAA
CACTGCATCTTGTTTTATCCTTCAGGAAAACACACATGCAACCAATGGAC
ACACACATACAGAGATATTTCATGTGTGCCCAAAAGACAAAGCAACCTTT
CCGAGGCAGAGTTATCACCTACAACCCATACCTGGCTTTATCCTGGTGAA
GGGAAGTGACTTTCACTGTTAATTAGTGTTAAGGAGTGGTCAATATTAGA
GGTAATGTAACTGTGTGCCAAAGGGTTCTCTATCAATATTTTTTCAAGTG
GACGAGCTGAGCCAAATAGATATAGAGGTATATCTTAGGGAGGAGACCAT
TACAGGATGAAGGCATTTTTGGTACTCGTTGTTGAGTGGAGGTCATTTTA
GTCCAAGCTCTATCTGTTTTATGGTGTGAAGATAGTTTGTGAGTGTCTAG
TCACTATTACCCCTCAAATGTGTGCCTCTTACGATGGGAATGATACGCGG
TCCTAATTCATGAATGTGTCCAAGTAGACTGCTGAGAGAGAGGGAGAGAT
AACTCCTGTTGGCTTGACTACGAAACAAGGGCAAGGAAGCTAGTTGGAAG
AGATTTTGATGATGCACAGAGAAGTATTAAGCAAGGCACCTCAACACATC
AAAGTATATTGTTACCTACAAAATATCAAGGATAC
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Coding sequence (CDS) from alignment at C-tenellus_contig10010:2214..5698-

>mRNA_C-tenellus_contig10010.1.1 ID=mRNA_C-tenellus_contig10010.1.1|Name=mRNA_C-tenellus_contig10010.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=303bp|location=Sequence derived from alignment at C-tenellus_contig10010:2214..5698- (Choristocarpus tenellus KU2346)
ATGATGGGAGATGAGAAATCCAAGGCTACGGTGGATGCCCTCATGGGTGG
GTTTTTGAGCGGGGTTTCAAAGTACTCTTTGGAGAGAGGGGTGGCTACCT
CGGTTCTTAATGGGAAGGCCGATCTCGTCAGACAGGTGGTACAAGCGTAC
CCACAGCTAAAGAATGAGAACCTCACATTTGGCTACAAGATTGAATACAA
GGGACTGGAGGAGAAGATGGGAAAGCAACAGATCAAGGACATCACCAGTG
ATATGACAATGGGACCCCTTGACAAAATGAAGAACATGATAGGCTTCAAG
TGA
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