mRNA_C-tenellus_contig10005.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10005.2.1
Unique NamemRNA_C-tenellus_contig10005.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10005.2.1 vs. uniprot
Match: D8LS69_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS69_ECTSI)

HSP 1 Score: 138 bits (348), Expect = 2.960e-38
Identity = 74/142 (52.11%), Postives = 95/142 (66.90%), Query Frame = 1 
Query:    1 AIRSLIASHLRGLSPGSLSALARVSITSDEILRDSMSFFEVTTSAWDSTRVRVAIDGCNPFTAVLASFGALPTPSHHDVLAPAMLD--SNGTSCGVDIWTTVS-GREGTWFLAVVGGSPLHGLRYFAGPPDKLTFEVTTISE 417
            A+   +A    GL P  LS LA++++   ++ RD M +F+V T AW STRVRV+I+ C P TAV+A+FGA PTPS H++LA AM D   NGT CGVD+ T  S  R+G W  AVVGGSPL G RYFAGP D L F+   I++
Sbjct:   26 AVELTLADEAAGLEPSMLSPLAQLTLIDAQVERDDMYYFQVLTEAWQSTRVRVSIEDCTPRTAVIAAFGAEPTPSRHELLAHAMPDVAGNGT-CGVDVITRPSYSRDGVWHFAVVGGSPLRGDRYFAGPADTLAFQAAVIAD 166
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BLAST of mRNA_C-tenellus_contig10005.2.1 vs. uniprot
Match: A0A6H5JJD0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJD0_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 3.760e-36
Identity = 74/142 (52.11%), Postives = 96/142 (67.61%), Query Frame = 1 
Query:    1 AIRSLIASHLRGLSPGSLSALARVSITSDEILRDSMSFFEVTTSAWDSTRVRVAIDGCNPFTAVLASFGALPTPSHHDVLAPAMLD--SNGTSCGVDIWTTVS-GREGTWFLAVVGGSPLHGLRYFAGPPDKLTFEVTTISE 417
            A+   +A    GL P  LS LA++++   ++ RD + +F+V T AW STRVRV+I+ C P TAV+A+FGA PTPS H++LA AM D   NGT CGVD+ T  S  R+G W  AVVGGSPL G RYFAGPPD L F+   I++
Sbjct:   26 AVEPTVADEAAGLEPSMLSPLAQLTLIDAQVERDDIHYFQVLTEAWQSTRVRVSIEDCTPRTAVIAAFGAEPTPSRHELLAHAMPDLAGNGT-CGVDVITRPSYSRDGVWHFAVVGGSPLRGDRYFAGPPDTLAFQAAVIAD 166
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10005.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LS69_ECTSI2.960e-3852.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JJD0_9PHAE3.760e-3652.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10005contigC-tenellus_contig10005:3541..4559 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size423
Hectar predicted targeting categorymitochondrion
Exons3
Cds size423
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789109.7673428-CDS-C-tenellus_contig10005:3540..36601680789109.7673428-CDS-C-tenellus_contig10005:3540..3660Choristocarpus tenellus KU2346CDSC-tenellus_contig10005 3541..3660 +
1680789109.7758582-CDS-C-tenellus_contig10005:3930..41301680789109.7758582-CDS-C-tenellus_contig10005:3930..4130Choristocarpus tenellus KU2346CDSC-tenellus_contig10005 3931..4130 +
1680789109.7867336-CDS-C-tenellus_contig10005:4456..45591680789109.7867336-CDS-C-tenellus_contig10005:4456..4559Choristocarpus tenellus KU2346CDSC-tenellus_contig10005 4457..4559 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10005.2.1prot_C-tenellus_contig10005.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10005 3541..4559 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10005.2.1

>prot_C-tenellus_contig10005.2.1 ID=prot_C-tenellus_contig10005.2.1|Name=mRNA_C-tenellus_contig10005.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=141bp
AIRSLIASHLRGLSPGSLSALARVSITSDEILRDSMSFFEVTTSAWDSTR
VRVAIDGCNPFTAVLASFGALPTPSHHDVLAPAMLDSNGTSCGVDIWTTV
SGREGTWFLAVVGGSPLHGLRYFAGPPDKLTFEVTTISEV*
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mRNA from alignment at C-tenellus_contig10005:3541..4559+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10005.2.1 ID=mRNA_C-tenellus_contig10005.2.1|Name=mRNA_C-tenellus_contig10005.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1019bp|location=Sequence derived from alignment at C-tenellus_contig10005:3541..4559+ (Choristocarpus tenellus KU2346)
GCCATACGAAGCCTGATCGCTTCTCACCTTCGTGGACTTTCTCCAGGCTC
GCTATCGGCTCTTGCCCGGGTGTCTATTACTAGCGACGAAATCCTGAGAG
ATAGTATGTCCTTCTTTGAGGTATGCAAGGCTGGGATGAGGTGGTGGTTG
GGCTCTCGACAAGGGTTTTCCCTTTGGGTGCCATGCTGGTTTGCGGGTGC
CATCCTGGTTTATGGGTGCCATCCTGGTTGGCGAGTGCCTTCCGAGGAGT
CGTTGTGGACGGATTGGGAAGAAGATGCAATGCAGCTGGCGCGGATGTGT
TGTCCCCTGGAGCCATATGGAGAGTAGTTTGGCACTTCCCCCCTTCTATC
TACTACTGCTAGTTACCTCCTCTTCGTGTGTATCTTTCAGGTGACGACGA
GTGCATGGGACAGTACTAGAGTACGGGTGGCCATCGATGGGTGCAACCCA
TTCACAGCCGTTCTGGCCTCCTTTGGCGCCCTACCCACGCCTTCGCATCA
TGATGTCCTGGCTCCCGCTATGCTGGACTCCAATGGTACCTCCTGTGGGG
TGGATATTTGGACAACAGTATCAGGAAGAGAAGGGACGTGGTACGTTTTC
CCCTCTCTCTTCCTCTCACATTTTCTCCCTTTCCCTAATCGTTGTCCTCT
TCCCCCTAATATCCATTTATAGTTGGAAAGACTCAACCATCCCTTTGAAT
GGGGGAGTGAGAAGCCTACACAACGCTTTGTGATCTGGTCATCAATGCAT
AGAATGTTATGACCTCATGGCAGGGGAACAAGAATTGCCAGAATGGTTGT
GTGGATTTAGTTACTTCAAGAGTGTTACATGAACTGATGTTACATCTTCC
CCTTATTCATCACTGTCCTTGTTTGCCTCAGCTTCCACCTCCATGTCACA
ACCCCTCTATTGCAAGGTTCTTGGCTGTGGTGGGTGGATCACCCCTCCAT
GGCTTGAGGTACTTTGCTGGCCCTCCTGACAAGCTGACCTTCGAGGTCAC
TACAATTTCAGAGGTGTGA
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Coding sequence (CDS) from alignment at C-tenellus_contig10005:3541..4559+

>mRNA_C-tenellus_contig10005.2.1 ID=mRNA_C-tenellus_contig10005.2.1|Name=mRNA_C-tenellus_contig10005.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=423bp|location=Sequence derived from alignment at C-tenellus_contig10005:3541..4559+ (Choristocarpus tenellus KU2346)
GCCATACGAAGCCTGATCGCTTCTCACCTTCGTGGACTTTCTCCAGGCTC
GCTATCGGCTCTTGCCCGGGTGTCTATTACTAGCGACGAAATCCTGAGAG
ATAGTATGTCCTTCTTTGAGGTGACGACGAGTGCATGGGACAGTACTAGA
GTACGGGTGGCCATCGATGGGTGCAACCCATTCACAGCCGTTCTGGCCTC
CTTTGGCGCCCTACCCACGCCTTCGCATCATGATGTCCTGGCTCCCGCTA
TGCTGGACTCCAATGGTACCTCCTGTGGGGTGGATATTTGGACAACAGTA
TCAGGAAGAGAAGGGACGTGGTTCTTGGCTGTGGTGGGTGGATCACCCCT
CCATGGCTTGAGGTACTTTGCTGGCCCTCCTGACAAGCTGACCTTCGAGG
TCACTACAATTTCAGAGGTGTGA
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