mRNA_C-tenellus_contig100.6.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig100.6.1
Unique NamemRNA_C-tenellus_contig100.6.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig100.6.1 vs. uniprot
Match: D8LKK8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKK8_ECTSI)

HSP 1 Score: 206 bits (524), Expect = 1.260e-65
Identity = 99/143 (69.23%), Postives = 123/143 (86.01%), Query Frame = 1
Query:    4 VPKNAKGGVLVTEEDLKAAFEFFDVEGKGKITAPILRKRLGALFPNMNAKEYRFLMNNKQEMTLDDLREVLLDNEVTNFDPVAEAFQAFDPEGTGYMDREVVRTVFQKVGYGMITDEDLDTLVEAADGDSDGRVGLEDFRQIC 432
            VPKNAKGG+LV EE+LKAAF+FFDVEGKG ITA  LRK+LGA   +++A+E R LMNNK EMT+DDLREVLL+NEVTNFDPVAEAF+A+DP  TG+MD E++R++F  +G+G ++DEDL  LVEAADGD DGRVG+ DFR++C
Sbjct:    9 VPKNAKGGILVCEEELKAAFDFFDVEGKGVITAGALRKKLGAFHRSLSAREARVLMNNKAEMTMDDLREVLLENEVTNFDPVAEAFKAYDPSETGFMDTEILRSIFDNLGFGKMSDEDLAILVEAADGDGDGRVGVSDFREMC 151          
BLAST of mRNA_C-tenellus_contig100.6.1 vs. uniprot
Match: A0A835ZDH5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDH5_9STRA)

HSP 1 Score: 199 bits (506), Expect = 1.310e-62
Identity = 93/142 (65.49%), Postives = 123/142 (86.62%), Query Frame = 1
Query:    4 VPKNAKGGVLVTEEDLKAAFEFFDVEGKGKITAPILRKRLGALFPNMNAKEYRFLMNNKQEMTLDDLREVLLDNEVTNFDPVAEAFQAFDPEGTGYMDREVVRTVFQKVGYGMITDEDLDTLVEAADGDSDGRVGLEDFRQI 429
            VPKN+KGGVLVT+E+L+A FEFFDV+G+G IT+  +RKR+GA + NMN +EY+FLMNNK EMTL+DLRE+L+DNEVT+FDPVAEAF+A+DP+GTGY+D EV+RT+F  +G+G I ++DL  LVEAAD D DG++ L DFR++
Sbjct:   30 VPKNSKGGVLVTDEELRAVFEFFDVDGRGVITSTCIRKRMGAFYKNMNPREYKFLMNNKSEMTLNDLRELLVDNEVTDFDPVAEAFKAYDPDGTGYVDVEVLRTIFSNLGFGDINNDDLAILVEAADVDGDGQISLNDFRRM 171          
BLAST of mRNA_C-tenellus_contig100.6.1 vs. uniprot
Match: A0A7S2C3J7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C3J7_9STRA)

HSP 1 Score: 197 bits (501), Expect = 1.880e-61
Identity = 94/142 (66.20%), Postives = 116/142 (81.69%), Query Frame = 1
Query:    4 VPKNAKGGVLVTEEDLKAAFEFFDVEGKGKITAPILRKRLGALFPNMNAKEYRFLMNNKQEMTLDDLREVLLDNEVTNFDPVAEAFQAFDPEGTGYMDREVVRTVFQKVGYGMITDEDLDTLVEAADGDSDGRVGLEDFRQI 429
            VPKN KGGVLVT+++L AAFEFFD++G GKIT   LRKRLG  + NM AK+YRFLMNNK E+TL DLRE+LLDNEVTNFDPVAEAF+ +DPEGTG++D +V+R +FQ +G+G +TDEDL  LVE  D D DG++ L DFR +
Sbjct:   27 VPKNEKGGVLVTDDELAAAFEFFDMDGSGKITMTNLRKRLGVFYKNMPAKDYRFLMNNKPELTLQDLRELLLDNEVTNFDPVAEAFKVYDPEGTGFVDHKVLRDMFQNLGFGEVTDEDLQILVETGDVDQDGKISLSDFRNM 168          
BLAST of mRNA_C-tenellus_contig100.6.1 vs. uniprot
Match: F0YPY1_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YPY1_AURAN)

HSP 1 Score: 192 bits (489), Expect = 8.850e-61
Identity = 91/142 (64.08%), Postives = 117/142 (82.39%), Query Frame = 1
Query:    4 VPKNAKGGVLVTEEDLKAAFEFFDVEGKGKITAPILRKRLGALFPNMNAKEYRFLMNNKQEMTLDDLREVLLDNEVTNFDPVAEAFQAFDPEGTGYMDREVVRTVFQKVGYGMITDEDLDTLVEAADGDSDGRVGLEDFRQI 429
            VP+N+KGGVLVTEE+LKAAF+FFDV+  GKIT   LRKRLG  + NM AKEYRFLMNNK EMTL+DL+E+LL+NEV NFDPVAEAF+ +DP+GTG++D  V+R++F+ +G+G ITD+DL  L E  D D DG++ L DFR++
Sbjct:    1 VPRNSKGGVLVTEEELKAAFDFFDVDSSGKITLGNLRKRLGVFYKNMPAKEYRFLMNNKSEMTLEDLKELLLENEVKNFDPVAEAFKVYDPDGTGFVDSNVLRSIFENLGFGEITDDDLTILTETGDVDGDGKISLMDFRKM 142          
BLAST of mRNA_C-tenellus_contig100.6.1 vs. uniprot
Match: A0A7S2S2D3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S2D3_9STRA)

HSP 1 Score: 190 bits (482), Expect = 7.020e-59
Identity = 89/142 (62.68%), Postives = 117/142 (82.39%), Query Frame = 1
Query:    4 VPKNAKGGVLVTEEDLKAAFEFFDVEGKGKITAPILRKRLGALFPNMNAKEYRFLMNNKQEMTLDDLREVLLDNEVTNFDPVAEAFQAFDPEGTGYMDREVVRTVFQKVGYGMITDEDLDTLVEAADGDSDGRVGLEDFRQI 429
            VPKNA GGVLVTE++L+AAF+FFD++G G ITA  L+KRL   + +M AKEYRFLMNNK  M+LDDL+++LLDNEVTNFDPVAEAF+ +DP+GTG++D EV+RT+FQ +G+G ++DEDL  LV+  D D DG++ L DFR +
Sbjct:   19 VPKNASGGVLVTEQELEAAFDFFDLDGTGTITASNLKKRLEVFYKDMPAKEYRFLMNNKAAMSLDDLKDLLLDNEVTNFDPVAEAFKVYDPQGTGFVDTEVLRTMFQDLGFGEVSDEDLQVLVQTGDADHDGKISLSDFRNM 160          
BLAST of mRNA_C-tenellus_contig100.6.1 vs. uniprot
Match: A0A8J2SJG6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SJG6_9STRA)

HSP 1 Score: 184 bits (466), Expect = 8.870e-57
Identity = 85/142 (59.86%), Postives = 116/142 (81.69%), Query Frame = 1
Query:    4 VPKNAKGGVLVTEEDLKAAFEFFDVEGKGKITAPILRKRLGALFPNMNAKEYRFLMNNKQEMTLDDLREVLLDNEVTNFDPVAEAFQAFDPEGTGYMDREVVRTVFQKVGYGMITDEDLDTLVEAADGDSDGRVGLEDFRQI 429
            VP+N++GGVLVT+E+LK+AF+FFDVEG GKIT   L+KRLG  + +M  KEY+FLMN++ E+TLDDLRE+LLDNEV NFDPVAEAF+ +DPEGTG++D  V++ +F+ +G+G I+++DL  L E  D D DGR+ L DFR++
Sbjct:   16 VPRNSRGGVLVTDEELKSAFDFFDVEGSGKITQAQLKKRLGVFYKDMPNKEYKFLMNDQSELTLDDLRELLLDNEVKNFDPVAEAFKVYDPEGTGFVDTSVLKAIFENLGFGEISEDDLAVLTETGDVDGDGRISLMDFRKM 157          
BLAST of mRNA_C-tenellus_contig100.6.1 vs. uniprot
Match: A0A6V1U3T1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1U3T1_HETAK)

HSP 1 Score: 179 bits (455), Expect = 1.630e-54
Identity = 85/142 (59.86%), Postives = 114/142 (80.28%), Query Frame = 1
Query:    4 VPKNAKGGVLVTEEDLKAAFEFFDVEGKGKITAPILRKRLGALFPNMNAKEYRFLMNNKQEMTLDDLREVLLDNEVTNFDPVAEAFQAFDPEGTGYMDREVVRTVFQKVGYGMITDEDLDTLVEAADGDSDGRVGLEDFRQI 429
            + +N+KGGVLVTE ++KAAF+FFD++ +GKIT   LRKRLG  + NM  KEY+FLMNNK EMTL+DL ++L+DNEV +FDPVAEAF+A+DP+  G +D E++R +FQ +G+G ITDEDL+ L E AD + DGR+ LEDFR +
Sbjct:   27 IRRNSKGGVLVTEAEIKAAFDFFDIDNEGKITLQNLRKRLGVFYKNMPTKEYKFLMNNKNEMTLEDLTDLLMDNEVKDFDPVAEAFKAYDPDSNGVIDPEMLRHIFQGLGFGDITDEDLEILTETADVNKDGRITLEDFRDM 168          
BLAST of mRNA_C-tenellus_contig100.6.1 vs. uniprot
Match: A0A7S2DSQ3_9DINO (Calmodulin n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2DSQ3_9DINO)

HSP 1 Score: 163 bits (412), Expect = 1.370e-48
Identity = 72/142 (50.70%), Postives = 110/142 (77.46%), Query Frame = 1
Query:    4 VPKNAKGGVLVTEEDLKAAFEFFDVEGKGKITAPILRKRLGALFPNMNAKEYRFLMNNKQEMTLDDLREVLLDNEVTNFDPVAEAFQAFDPEGTGYMDREVVRTVFQKVGYGMITDEDLDTLVEAADGDSDGRVGLEDFRQI 429
            +P+N KGG+L+TEE+L+ A++FFD  GK K+T   ++KRL   + ++  +E +FL+NN+ E+T ++L  +L DN++TNFDPV EAF+ +DP GTG++D +VV+T F+++GYG I+DED   ++E ADGD DGR+GLEDFR +
Sbjct:   19 LPRNEKGGLLITEEELRVAWDFFDTSGKSKLTTFDVKKRLQTFYKDITTREVKFLLNNQPEITFEELYALLKDNQLTNFDPVKEAFKVYDPHGTGFIDMDVVKTFFKELGYGDISDEDAKIILETADGDKDGRIGLEDFRMM 160          
BLAST of mRNA_C-tenellus_contig100.6.1 vs. uniprot
Match: A0A0G4EPG1_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EPG1_VITBC)

HSP 1 Score: 161 bits (408), Expect = 7.970e-48
Identity = 72/140 (51.43%), Postives = 110/140 (78.57%), Query Frame = 1
Query:    4 VPKNAKGGVLVTEEDLKAAFEFFDVEGKGKITAPILRKRLGALFPNMNAKEYRFLMNNKQEMTLDDLREVLLDNEVTNFDPVAEAFQAFDPEGTGYMDREVVRTVFQKVGYGMITDEDLDTLVEAADGDSDGRVGLEDFR 423
            +P+N KGGVL+T+E+LK A++FFD +G+GK+TA  LR+RL   + N++ KE +FLMNN+ E+  D+L ++L DN++TNFDPV EAF+ +DP+ TG++D  VV+  FQ++GYG ++ ED+  L++ AD D DG++GL+DFR
Sbjct:   39 MPRNEKGGVLITKEELKVAWDFFDTKGQGKLTAAELRRRLAVFYKNISLKEVKFLMNNQSEIGFDELYDLLKDNQLTNFDPVREAFKVYDPQETGFVDLAVVKQCFQQLGYGDLSAEDMRILIQTADADGDGKIGLDDFR 178          
BLAST of mRNA_C-tenellus_contig100.6.1 vs. uniprot
Match: W2Q6J6_PHYPN (Uncharacterized protein n=9 Tax=Phytophthora TaxID=4783 RepID=W2Q6J6_PHYPN)

HSP 1 Score: 159 bits (402), Expect = 4.360e-47
Identity = 77/142 (54.23%), Postives = 104/142 (73.24%), Query Frame = 1
Query:    4 VPKNAKGGVLVTEEDLKAAFEFFDVEGKGKITAPILRKRLGALFPNMNAKEYRFLMNNKQEMTLDDLREVLLDNEVTNFDPVAEAFQAFDPEGTGYMDREVVRTVFQKVGYGMITDEDLDTLVEAADGDSDGRVGLEDFRQI 429
            VP+N  GGVLVT E +  AF+F DVE KG++T   LR RLG  + NM+ K+ R L++ + E+T + L  +LL NEV NFDPVAEAF+A+DPE TG++ RE++R VF+++GYG +TDEDLD L+  AD D DGR+ L DFR +
Sbjct:   34 VPQNEFGGVLVTPEQIHMAFQFLDVEKKGRVTLDNLRSRLGIFYDNMSLKDVRLLLSEESELTEEYLHALLLPNEVKNFDPVAEAFKAYDPEETGFISREMLRYVFERLGYGALTDEDLDILISCADADQDGRINLADFRAM 175          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig100.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKK8_ECTSI1.260e-6569.23Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZDH5_9STRA1.310e-6265.49Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2C3J7_9STRA1.880e-6166.20Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
F0YPY1_AURAN8.850e-6164.08Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A7S2S2D3_9STRA7.020e-5962.68Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A8J2SJG6_9STRA8.870e-5759.86Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A6V1U3T1_HETAK1.630e-5459.86Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2DSQ3_9DINO1.370e-4850.70Calmodulin n=1 Tax=Alexandrium andersonii TaxID=32... [more]
A0A0G4EPG1_VITBC7.970e-4851.43Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
W2Q6J6_PHYPN4.360e-4754.23Uncharacterized protein n=9 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig100contigC-tenellus_contig100:7223..8284 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LKK8
PFAMsEF-hand_7,EF-hand_8
Model size432
Max annot lvl2759|Eukaryota
KEGG koko:K02183
KEGG Pathwayko04014,ko04015,ko04016,ko04020,ko04022,ko04024,ko04070,ko04114,ko04218,ko04261,ko04270,ko04371,ko04626,ko04713,ko04720,ko04722,ko04728,ko04740,ko04744,ko04745,ko04750,ko04910,ko04912,ko04915,ko04916,ko04921,ko04922,ko04924,ko04925,ko04970,ko04971,ko05010,ko05031,ko05034,ko05133,ko05152,ko05167,ko05200,ko05214,ko05418,map04014,map04015,map04016,map04020,map04022,map04024,map04070,map04114,map04218,map04261,map04270,map04371,map04626,map04713,map04720,map04722,map04728,map04740,map04744,map04745,map04750,map04910,map04912,map04915,map04916,map04921,map04922,map04924,map04925,map04970,map04971,map05010,map05031,map05034,map05133,map05152,map05167,map05200,map05214,map05418
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.06e-66
EggNOG OGs2BWVD@1|root,2S374@2759|Eukaryota
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-16_003330.1
Cds size432
BRITEko00000,ko00001,ko01009,ko03036,ko04131,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789108.7276866-CDS-C-tenellus_contig100:7222..73751680789108.7276866-CDS-C-tenellus_contig100:7222..7375Choristocarpus tenellus KU2346CDSC-tenellus_contig100 7223..7375 +
1680789108.7490795-CDS-C-tenellus_contig100:7491..76021680789108.7490795-CDS-C-tenellus_contig100:7491..7602Choristocarpus tenellus KU2346CDSC-tenellus_contig100 7492..7602 +
1680789108.7613997-CDS-C-tenellus_contig100:8116..82841680789108.7613997-CDS-C-tenellus_contig100:8116..8284Choristocarpus tenellus KU2346CDSC-tenellus_contig100 8117..8284 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig100.6.1prot_C-tenellus_contig100.6.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig100 7223..8284 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig100.6.1

>prot_C-tenellus_contig100.6.1 ID=prot_C-tenellus_contig100.6.1|Name=mRNA_C-tenellus_contig100.6.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=144bp
KVPKNAKGGVLVTEEDLKAAFEFFDVEGKGKITAPILRKRLGALFPNMNA
KEYRFLMNNKQEMTLDDLREVLLDNEVTNFDPVAEAFQAFDPEGTGYMDR
EVVRTVFQKVGYGMITDEDLDTLVEAADGDSDGRVGLEDFRQIC
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mRNA from alignment at C-tenellus_contig100:7223..8284+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig100.6.1 ID=mRNA_C-tenellus_contig100.6.1|Name=mRNA_C-tenellus_contig100.6.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1062bp|location=Sequence derived from alignment at C-tenellus_contig100:7223..8284+ (Choristocarpus tenellus KU2346)
AAGGTTCCCAAGAACGCCAAGGGTGGAGTTCTAGTTACAGAGGAAGATCT GAAGGCAGCGTTTGAATTCTTTGATGTAGAAGGGAAAGGGAAAATAACTG CGCCCATCCTCCGAAAAAGATTGGGAGCACTCTTTCCCAACATGAATGCC AAGGTGGGTGGCTGACATCACTGTAGTATTGTGATGGAGTGAGCATGCCT TGCACATTACACACATTTTCAAAATATGTACTTATATCTAGGTATCCACA ACATATGTCTCTTGAACAGGAATATCGCTTTCTGATGAATAACAAGCAAG AGATGACTCTGGATGACCTTAGGGAGGTACTTCTGGACAATGAAGTCACT AACTTCGACCCAGTTGCAGAGGCCTTTCAGGTGTTACATGCATGCTGTGC TCAGGGTAGGAATGTTTTTGAATTGGTCCCCAATCACCCCTACCAGGGCC ATCAGCATCTTGGATATTGAACATGATTAACAAAAAATTCAAACTTACCA CAGAGAGATGGCCAATCAGTTTCTCAAGAAAAATTCTCAAAAAGAGGAAT ACAGATGTAGTATGCCACTTCCAAGATGAAAAATTCAAACCTAGAGAAGT CTCAAATATGGTTAGGTGCTTATTGAAAGGCATTTCAGTGTGCTATGGAG TATCCACTTGCTCTATGCCTTCACAGTATATATTGCAACCAACAAAACAA CTTATGGCAGCATTGGTGATTGCATGTCAGTTCAAGATCCTCACTTCAAA GAGCTACACTGTCCTGTTGGTACTTTAGTTTGCCTTTTCACGGGTGAACC AACGCTACGTGCTAATGTGAAGTACCACACACAGCAACTGATATCCTTGA TGGTTTTGCCTCAACATATTCCTCTACATTGCAAACATTGGCAGGCTTTT GATCCAGAAGGAACTGGTTACATGGATAGGGAAGTGGTTCGTACTGTATT TCAGAAAGTAGGATATGGCATGATCACTGACGAGGACCTTGACACTCTGG TGGAGGCTGCTGATGGCGACAGTGATGGAAGAGTTGGTCTCGAGGATTTC CGCCAAATATGT
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Coding sequence (CDS) from alignment at C-tenellus_contig100:7223..8284+

>mRNA_C-tenellus_contig100.6.1 ID=mRNA_C-tenellus_contig100.6.1|Name=mRNA_C-tenellus_contig100.6.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=432bp|location=Sequence derived from alignment at C-tenellus_contig100:7223..8284+ (Choristocarpus tenellus KU2346)
AAGGTTCCCAAGAACGCCAAGGGTGGAGTTCTAGTTACAGAGGAAGATCT
GAAGGCAGCGTTTGAATTCTTTGATGTAGAAGGGAAAGGGAAAATAACTG
CGCCCATCCTCCGAAAAAGATTGGGAGCACTCTTTCCCAACATGAATGCC
AAGGAATATCGCTTTCTGATGAATAACAAGCAAGAGATGACTCTGGATGA
CCTTAGGGAGGTACTTCTGGACAATGAAGTCACTAACTTCGACCCAGTTG
CAGAGGCCTTTCAGGCTTTTGATCCAGAAGGAACTGGTTACATGGATAGG
GAAGTGGTTCGTACTGTATTTCAGAAAGTAGGATATGGCATGATCACTGA
CGAGGACCTTGACACTCTGGTGGAGGCTGCTGATGGCGACAGTGATGGAA
GAGTTGGTCTCGAGGATTTCCGCCAAATATGT
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