mRNA_C-linearis_contig10.596.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.596.1
Unique NamemRNA_C-linearis_contig10.596.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig10.596.1 vs. uniprot
Match: A0A6H5KFB9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFB9_9PHAE)

HSP 1 Score: 247 bits (630), Expect = 1.510e-75
Identity = 117/163 (71.78%), Postives = 135/163 (82.82%), Query Frame = 2 
Query:    2 QGFDMRILSSANSSIESVLEENYLRFSFLREESFEGNGFPETLVTGTYYRPGSQNYPAIDSFGVDSGSKTLWFFQMKSAGLPPMKGDNAVKWKRVERHWRRAKLPHRAPIKN-CVFAFVVPGGRVWNKATKTSENDGGCGDWLLDATDGFKSACDVCVIKIPL 487
            Q FDMRILS A+SS +SVLE N LR SF++E+SFEGN FP+ LV GTYYRPGS N+ A DSFGVDSGSKTLWFFQ+KSAGLPP +G+ AVKW  VE++WRRAKL H APIK   V+AFVVP G+VWNKAT+T E DGG GDW  + TDGFKSACDVCVI++PL
Sbjct:  371 QWFDMRILSRASSSTKSVLEGNRLRLSFVKEQSFEGNSFPDALVAGTYYRPGSPNFAAADSFGVDSGSKTLWFFQVKSAGLPPKEGEKAVKWTHVEKYWRRAKLHHGAPIKKRFVYAFVVPEGKVWNKATETCEEDGGRGDWRRNVTDGFKSACDVCVIEMPL 533
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.596.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KFB9_9PHAE1.510e-7571.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:2757649..2758374 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size726
Cds size477
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.596.1prot_C-linearis_contig10.596.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 2757662..2758138 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927326.448142-UTR-C-linearis_contig10:2757648..27576611622927326.448142-UTR-C-linearis_contig10:2757648..2757661Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2757649..2757661 +
1690879627.8637567-UTR-C-linearis_contig10:2757648..27576611690879627.8637567-UTR-C-linearis_contig10:2757648..2757661Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2757649..2757661 +
1622927326.471944-UTR-C-linearis_contig10:2758138..27583741622927326.471944-UTR-C-linearis_contig10:2758138..2758374Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2758139..2758374 +
1690879627.8808625-UTR-C-linearis_contig10:2758138..27583741690879627.8808625-UTR-C-linearis_contig10:2758138..2758374Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2758139..2758374 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927326.4603846-CDS-C-linearis_contig10:2757661..27581381622927326.4603846-CDS-C-linearis_contig10:2757661..2758138Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2757662..2758138 +
1690879627.8722138-CDS-C-linearis_contig10:2757661..27581381690879627.8722138-CDS-C-linearis_contig10:2757661..2758138Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2757662..2758138 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.596.1

>prot_C-linearis_contig10.596.1 ID=prot_C-linearis_contig10.596.1|Name=mRNA_C-linearis_contig10.596.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=159bp
MRILSSANSSIESVLEENYLRFSFLREESFEGNGFPETLVTGTYYRPGSQ
NYPAIDSFGVDSGSKTLWFFQMKSAGLPPMKGDNAVKWKRVERHWRRAKL
PHRAPIKNCVFAFVVPGGRVWNKATKTSENDGGCGDWLLDATDGFKSACD
VCVIKIPL*
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mRNA from alignment at C-linearis_contig10:2757649..2758374+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.596.1 ID=mRNA_C-linearis_contig10.596.1|Name=mRNA_C-linearis_contig10.596.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=726bp|location=Sequence derived from alignment at C-linearis_contig10:2757649..2758374+ (Chordaria linearis ClinC8C monoicous)
GCAAGGGTTTGACATGAGAATCCTGAGCAGTGCAAATAGCAGTATAGAGT
CTGTACTCGAGGAGAATTATTTGAGGTTTAGTTTTCTGAGGGAGGAGTCG
TTCGAGGGCAATGGTTTTCCAGAAACGCTCGTCACTGGGACGTACTATAG
GCCCGGAAGCCAGAATTACCCAGCGATTGATTCGTTCGGTGTTGACAGCG
GCAGCAAAACCTTGTGGTTTTTTCAGATGAAATCCGCAGGCTTGCCGCCT
ATGAAGGGGGACAACGCTGTCAAATGGAAGCGTGTAGAACGGCACTGGAG
AAGGGCTAAACTCCCCCACCGCGCGCCAATCAAGAATTGTGTGTTTGCGT
TTGTGGTTCCAGGGGGCAGAGTATGGAACAAGGCCACCAAGACTAGCGAA
AATGATGGTGGTTGTGGTGATTGGCTGCTCGACGCAACTGACGGTTTTAA
ATCGGCGTGTGATGTATGCGTAATTAAGATCCCATTGTAATTGAACTGGT
TTTTCTGACATCGCAGCCTCTCCTGCTGGAGAAGTAGAGTTGTGAAGAGG
TTTCTAAACGGCTAGCGATGGGAAATGTTACACGCGGCTCATTATGACAC
ACGGACACCCACTCGTCCGAACTCACCGTCGAGTTTCATCAAGAGAGATT
TCAGGCCCGTCGTTGTGCGAATGCAAGAGTAGATCAAGTGGTCAATCAAG
GCCACGGATTCCCACCACATCGCATC
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Coding sequence (CDS) from alignment at C-linearis_contig10:2757649..2758374+

>mRNA_C-linearis_contig10.596.1 ID=mRNA_C-linearis_contig10.596.1|Name=mRNA_C-linearis_contig10.596.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=954bp|location=Sequence derived from alignment at C-linearis_contig10:2757649..2758374+ (Chordaria linearis ClinC8C monoicous)
ATGAGAATCCTGAGCAGTGCAAATAGCAGTATAGAGTCTGTACTCGAGGA
GAATTATTTGAGGTTTAGTTTTCTGAGGGAGGAGTCGTTCGAGGGCAATG
GTTTTCCAGAAACGCTCGTCACTGGGACGTACTATAGGCCCGGAAGCCAG
AATTACCCAGCGATTGATTCGTTCGGTGTTGACAGCGGCAGCAAAACCTT
GTGGTTTTTTCAGATGAAATCCGCAGGCTTGCCGCCTATGAAGGGGGACA
ACGCTGTCAAATGGAAGCGTGTAGAACGGCACTGGAGAAGGGCTAAACTC
CCCCACCGCGCGCCAATCAAGAATTGTGTGTTTGCGTTTGTGGTTCCAGG
GGGCAGAGTATGGAACAAGGCCACCAAGACTAGCGAAAATGATGGTGGTT
GTGGTGATTGGCTGCTCGACGCAACTGACGGTTTTAAATCGGCGTGTGAT
GTATGCGTAATTAAGATCCCATTGTAAATGAGAATCCTGAGCAGTGCAAA
TAGCAGTATAGAGTCTGTACTCGAGGAGAATTATTTGAGGTTTAGTTTTC
TGAGGGAGGAGTCGTTCGAGGGCAATGGTTTTCCAGAAACGCTCGTCACT
GGGACGTACTATAGGCCCGGAAGCCAGAATTACCCAGCGATTGATTCGTT
CGGTGTTGACAGCGGCAGCAAAACCTTGTGGTTTTTTCAGATGAAATCCG
CAGGCTTGCCGCCTATGAAGGGGGACAACGCTGTCAAATGGAAGCGTGTA
GAACGGCACTGGAGAAGGGCTAAACTCCCCCACCGCGCGCCAATCAAGAA
TTGTGTGTTTGCGTTTGTGGTTCCAGGGGGCAGAGTATGGAACAAGGCCA
CCAAGACTAGCGAAAATGATGGTGGTTGTGGTGATTGGCTGCTCGACGCA
ACTGACGGTTTTAAATCGGCGTGTGATGTATGCGTAATTAAGATCCCATT
GTAA
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