mRNA_C-linearis_contig10.455.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.455.1
Unique NamemRNA_C-linearis_contig10.455.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig10.455.1 vs. uniprot
Match: A0A6H5JAT0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAT0_9PHAE)

HSP 1 Score: 200 bits (508), Expect = 4.920e-61
Identity = 93/111 (83.78%), Postives = 100/111 (90.09%), Query Frame = -1 
Query:    1 VACMDFAHCKGDWNGTIGAISTKSSNNNIVHLATCIVAKETGDAYRYLIDNALKNPSVAAFLNKPSTTIITDKHKGSESAVPDRLDQAEYLRCGEHMLKNCGAVGPVRRSH 333
            V CMDFAH KG+WNGTIGA++TKSS+N IVHLATCIVAKE G+AYRYLIDNALKNP+VAAFL KPSTTIITDKHKGSESAVPD LD+AEYL C EHMLKNCGAVGP  R H
Sbjct:  204 VLCMDFAHMKGEWNGTIGAMTTKSSDNTIVHLATCIVAKENGNAYRYLIDNALKNPTVAAFLKKPSTTIITDKHKGSESAVPDGLDEAEYLTCAEHMLKNCGAVGPGGRMH 314
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BLAST of mRNA_C-linearis_contig10.455.1 vs. uniprot
Match: A0A6H5JAP9_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAP9_9PHAE)

HSP 1 Score: 163 bits (412), Expect = 3.940e-50
Identity = 73/103 (70.87%), Postives = 85/103 (82.52%), Query Frame = -1 
Query:   16 MDFAHCKGDWNGTIGAISTKSSNNNIVHLATCIVAKETGDAYRYLIDNALKNPSVAAFLNKPSTTIITDKHKGSESAVPDRLDQAEYLRCGEHMLKNCGAVGP 324
            MDF HCKGDW+G IGAIS KS+NNN++ +ATC+  KET DAY YL+ NALKNP +AAFLNKP+TTIITDKHKGSESAVP  L  AE+L+C EH+LKN G  GP
Sbjct:    1 MDFCHCKGDWDGPIGAISVKSANNNVLQVATCLHPKETADAYTYLMSNALKNPEMAAFLNKPTTTIITDKHKGSESAVPRVLQLAEHLKCAEHILKNAGITGP 103
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BLAST of mRNA_C-linearis_contig10.455.1 vs. uniprot
Match: A0A6H5K387_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K387_9PHAE)

HSP 1 Score: 168 bits (425), Expect = 4.480e-49
Identity = 79/109 (72.48%), Postives = 86/109 (78.90%), Query Frame = -1 
Query:    7 VACMDFAHCKGDWNGTIGAISTKSSNNNIVHLATCIVAKETGDAYRYLIDNALKNPSVAAFLNKPSTTIITDKHKGSESAVPDRLDQAEYLRCGEHMLKNCGAVGPVRR 333
            VACMDF H  G+WNG IGAI  KSSNNNIV LATCI  KE   AY YLIDNA +N  VA FLNKP+T+II+DKHKGSESAVP RLDQ+E+LRC EHMLKN G VGP  R
Sbjct:  225 VACMDFCHMTGEWNGVIGAICVKSSNNNIVQLATCIAPKENAAAYEYLIDNACRNDEVATFLNKPTTSIISDKHKGSESAVPCRLDQSEHLRCVEHMLKNAGTVGPEGR 333
[Close]
BLAST of mRNA_C-linearis_contig10.455.1 vs. uniprot
Match: A0A6H5L4I0_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4I0_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 3.280e-23
Identity = 49/111 (44.14%), Postives = 64/111 (57.66%), Query Frame = -1 
Query:    1 VACMDFAHCKGDWNGTIGAISTKSSNNNIVHLATCIVAKETGDAYRYLIDNALKNPSVAAFLNKPSTTIITDKHKGSESAVPDRLDQAEYLRCGEHMLKNCGAVGPVRRSH 333
            V  MD A     WNG  GAIS K +NN I+H+AT + AKE    Y  L+  A++ P +   LN  +TT  TDKHKGS++AVP      E+ RC EH+ +  G +GP  R H
Sbjct:  229 VFAMDAAAFHDVWNGQFGAISFKDANNKIIHVATMVQAKENAAMYTELLTRAMQFPELKTILNNVNTTCFTDKHKGSDAAVPKICPLTEHRRCVEHLTRTVGCIGPKGRYH 339
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.455.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JAT0_9PHAE4.920e-6183.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAP9_9PHAE3.940e-5070.87MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5K387_9PHAE4.480e-4972.48MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5L4I0_9PHAE3.280e-2344.14SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:682562..682894 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size333
Cds size333
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927325.454219-CDS-C-linearis_contig10:682561..6828941622927325.454219-CDS-C-linearis_contig10:682561..682894Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 682562..682894 +
1690879627.5264478-CDS-C-linearis_contig10:682561..6828941690879627.5264478-CDS-C-linearis_contig10:682561..682894Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 682562..682894 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.455.1prot_C-linearis_contig10.455.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 682562..682894 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.455.1

>prot_C-linearis_contig10.455.1 ID=prot_C-linearis_contig10.455.1|Name=mRNA_C-linearis_contig10.455.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=111bp
MTSPHRPDSPAVFQHVLPTPKVLRLVQPVRHGRLRSFVLVGDDGRARLVQ
KCRHRRVLERVVDEVPVGVTGLLGHDTSGQVHDVVVGALGADRPDRPVPV
SLAVCKIHAGH
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mRNA from alignment at C-linearis_contig10:682562..682894+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.455.1 ID=mRNA_C-linearis_contig10.455.1|Name=mRNA_C-linearis_contig10.455.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=333bp|location=Sequence derived from alignment at C-linearis_contig10:682562..682894+ (Chordaria linearis ClinC8C monoicous)
ATGACTTCGCCTCACCGGCCCGACAGCCCCGCAGTTTTTCAACATGTGCT
CCCCACACCGAAGGTACTCCGCCTGGTCCAGCCTGTCCGGCACGGCAGAC
TCCGATCCTTTGTGCTTGTCGGTGATGATGGTCGTGCTCGGCTTGTTCAG
AAATGCCGCCACCGACGGGTTCTTGAGCGCGTTGTCGATGAGGTACCGGT
AGGCGTCACCGGTCTCCTTGGCCACGATACAAGTGGCCAGGTGCACGATG
TTGTTGTTGGAGCTCTTGGTGCTGATCGCCCCGATCGTCCCGTTCCAGTC
TCCCTTGCAGTGTGCAAAATCCATGCAGGCCAC
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Coding sequence (CDS) from alignment at C-linearis_contig10:682562..682894+

>mRNA_C-linearis_contig10.455.1 ID=mRNA_C-linearis_contig10.455.1|Name=mRNA_C-linearis_contig10.455.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at C-linearis_contig10:682562..682894+ (Chordaria linearis ClinC8C monoicous)
ATGACTTCGCCTCACCGGCCCGACAGCCCCGCAGTTTTTCAACATGTGCT
CCCCACACCGAAGGTACTCCGCCTGGTCCAGCCTGTCCGGCACGGCAGAC
TCCGATCCTTTGTGCTTGTCGGTGATGATGGTCGTGCTCGGCTTGTTCAG
AAATGCCGCCACCGACGGGTTCTTGAGCGCGTTGTCGATGAGGTACCGGT
AGGCGTCACCGGTCTCCTTGGCCACGATACAAGTGGCCAGGTGCACGATG
TTGTTGTTGGAGCTCTTGGTGCTGATCGCCCCGATCGTCCCGTTCCAGTC
TCCCTTGCAGTGTGCAAAATCCATGCAGGCCACATGACTTCGCCTCACCG
GCCCGACAGCCCCGCAGTTTTTCAACATGTGCTCCCCACACCGAAGGTAC
TCCGCCTGGTCCAGCCTGTCCGGCACGGCAGACTCCGATCCTTTGTGCTT
GTCGGTGATGATGGTCGTGCTCGGCTTGTTCAGAAATGCCGCCACCGACG
GGTTCTTGAGCGCGTTGTCGATGAGGTACCGGTAGGCGTCACCGGTCTCC
TTGGCCACGATACAAGTGGCCAGGTGCACGATGTTGTTGTTGGAGCTCTT
GGTGCTGATCGCCCCGATCGTCCCGTTCCAGTCTCCCTTGCAGTGTGCAA
AATCCATGCAGGCCAC
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