mRNA_C-linearis_contig10.437.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.437.1
Unique NamemRNA_C-linearis_contig10.437.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig10.437.1 vs. uniprot
Match: A0A6H5K630_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K630_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 3.380e-37
Identity = 71/112 (63.39%), Postives = 86/112 (76.79%), Query Frame = -2
Query:    3 RNPTASQAKERAARGDLNRRLHGGSRANHNRKARRGANFIAFGYRGDIMLPVTEEARCASVRAPSRNSAANVLFPRYFSFDRLGPDPKDESSASSKSTPASAGQATKMFNPF 338
            RNPTA+QAKERAARGDLNR L GGSRANHNR +R+G++FIA G RG I+LPVT+E R A++RAPSRN A+ V+F RY S  +   DP  E  AS +STPASAGQ   +FN +
Sbjct:    9 RNPTATQAKERAARGDLNRGLRGGSRANHNRTSRKGSDFIASGVRGQIILPVTDEERSATMRAPSRNPASAVMFSRYLSVVKPRADPTVEGGASQESTPASAGQTPVVFNSY 120          
BLAST of mRNA_C-linearis_contig10.437.1 vs. uniprot
Match: A0A6H5KZP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZP5_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 1.510e-30
Identity = 61/97 (62.89%), Postives = 74/97 (76.29%), Query Frame = -2
Query:    3 DLNRRLHGGSRANHNRKARRGANFIAFGYRGDIMLPVTEEARCASVRAPSRNSAANVLFPRYFSFDRLGPDPKDESSASSKSTPASAGQATKMFNPF 293
            DLNR LHGGSRANHNR +R+G +FIA G RG I+LPVT+E R A++RAPSRN A+ V+FPRY S  +   DP  E SAS +STPASAGQ   +FNP+
Sbjct:   89 DLNRGLHGGSRANHNRTSRKGNDFIASGVRGQIILPVTDEERSATMRAPSRNPASAVMFPRYLSVVKPRADPTVEGSASQESTPASAGQIPVVFNPY 185          
BLAST of mRNA_C-linearis_contig10.437.1 vs. uniprot
Match: A0A6H5K5X1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5X1_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 6.830e-29
Identity = 64/111 (57.66%), Postives = 80/111 (72.07%), Query Frame = -2
Query:    3 NPTASQAKERAARGDLNRRLHGGSRANHNRKARRGANFIAFGYRGDIMLPVTEEARCASVRAPSRNSAANVLFPRYFSFDRLGPDPKDESSASSKSTPASAGQATKMFNPF 335
            NPT ++AKERA RGDL R LHG SRA HN+ AR+G +FIA G RG I+LPVT+  R A++RAPS+N A+ V+FPRY S D+   DP    SAS +ST A AGQ   +FNP+
Sbjct:  548 NPTCAEAKERAERGDLQRSLHGVSRAKHNQNARKGEDFIASGIRGRIILPVTDAERSATMRAPSKNPASAVMFPRYISIDKPHADPVVGGSASQESTAAPAGQTPVVFNPY 658          
BLAST of mRNA_C-linearis_contig10.437.1 vs. uniprot
Match: A0A6H5L2C2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2C2_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 2.330e-28
Identity = 57/79 (72.15%), Postives = 67/79 (84.81%), Query Frame = -2
Query:  102 RNPTASQAKERAARGDLNRRLHGGSRANHNRKARRGANFIAFGYRGDIMLPVTEEARCASVRAPSRNSAANVLFPRYFS 338
            RNPTA+QAKERAARGDLNR L GGSRANHNR +R+G +FIA G RG I+LPVT+E R A++RAPSRN A+ V+FPRY S
Sbjct:   84 RNPTATQAKERAARGDLNRGLQGGSRANHNRTSRKGNDFIASGVRGQIILPVTDEERSATMRAPSRNPASAVMFPRYLS 162          
BLAST of mRNA_C-linearis_contig10.437.1 vs. uniprot
Match: A0A6H5KB63_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB63_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 1.050e-26
Identity = 53/81 (65.43%), Postives = 63/81 (77.78%), Query Frame = -2
Query:   93 NPTASQAKERAARGDLNRRLHGGSRANHNRKARRGANFIAFGYRGDIMLPVTEEARCASVRAPSRNSAANVLFPRYFSFDR 335
            NP A+QAKER ARGDL R LHG SRANHN+ AR+G +FIA G RG IMLPVT+  R A++RAPSRN  + V+FPRY S D+
Sbjct:   10 NPIAAQAKERTARGDLQRSLHGVSRANHNKNARKGEDFIASGIRGRIMLPVTDAERSATMRAPSRNPVSAVMFPRYISIDK 90          
BLAST of mRNA_C-linearis_contig10.437.1 vs. uniprot
Match: A0A6H5JS87_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS87_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 6.510e-26
Identity = 54/81 (66.67%), Postives = 63/81 (77.78%), Query Frame = -2
Query:   93 NPTASQAKERAARGDLNRRLHGGSRANHNRKARRGANFIAFGYRGDIMLPVTEEARCASVRAPSRNSAANVLFPRYFSFDR 335
            NPTA+QAKERAARGDL R LHG SRANHN+  R+G  FIA G RG IMLPVT+  R A++RAPSRNS + V+FPRY S  +
Sbjct:   75 NPTAAQAKERAARGDLYRSLHGVSRANHNKNERKGEEFIASGIRGRIMLPVTDAERSATMRAPSRNSVSAVMFPRYISIHK 155          
BLAST of mRNA_C-linearis_contig10.437.1 vs. uniprot
Match: D7FZI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI2_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 3.790e-21
Identity = 60/112 (53.57%), Postives = 72/112 (64.29%), Query Frame = -2
Query:    3 RNPTASQAKERAARGDLNRRLHGGSRANHNRKARRGANFIAFGYRGDIMLPVTEEARCASVRAPSRNSAANVLFPRYFSFDRLGPDPKDESSASSKSTPASAGQATKMFNPF 338
            RNPTA+QAKER+ RGDLNR LHGGSRAN NR AR G +F    YRG IML VT+     +VR+ SRNS   VL PRY S + L   P  E+S      PA+ G +T + NP+
Sbjct:  927 RNPTAAQAKERSVRGDLNRGLHGGSRANFNRNARSGDDFNVSDYRGRIMLAVTQAVAAENVRSRSRNSPNAVLCPRYISVEPLAATPVVETSV-----PAAQGSST-IVNPY 1032          
BLAST of mRNA_C-linearis_contig10.437.1 vs. uniprot
Match: A0A6H5K6I9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6I9_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 5.620e-21
Identity = 60/112 (53.57%), Postives = 71/112 (63.39%), Query Frame = -2
Query:    3 RNPTASQAKERAARGDLNRRLHGGSRANHNRKARRGANFIAFGYRGDIMLPVTEEARCASVRAPSRNSAANVLFPRYFSFDRLGPDPKDESSASSKSTPASAGQATKMFNPF 338
            RNPTA+QAKER+ RGDLNR LHGGSRAN NR AR G +FI   YR  IML VT+     +VRA SRNS   VL PRY S + L   P  E+       PA+ G +T + NP+
Sbjct:  255 RNPTAAQAKERSVRGDLNRGLHGGSRANFNRNARSGNDFIDSDYRSRIMLAVTQAEAAENVRARSRNSPNAVLCPRYISVEPLAAAPVVEAPV-----PAAQGSST-IVNPY 360          
BLAST of mRNA_C-linearis_contig10.437.1 vs. uniprot
Match: A0A6H5JR14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR14_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 6.290e-18
Identity = 50/99 (50.51%), Postives = 63/99 (63.64%), Query Frame = -2
Query:   42 RNPTASQAKERAARGDLNRRLHGGSRANHNRKARRGANFIAFGYRGDIMLPVTEEARCASVRAPSRNSAANVLFPRYFSFDRLGPDPKDESSASSKSTP 338
            RNPTA+QAKER ARGD+ R LHG  RAN+NR AR+G +F+A GYR ++MLPV E  R   +RA +++S   VL P Y S    G  P  + SA     P
Sbjct:  677 RNPTAAQAKERGARGDILRGLHGPCRANYNRNARKGRDFVASGYRAEVMLPVGEGERSVRIRARTKDSDEAVLSPWYISVAAPGATPVADGSAVESGAP 775          
BLAST of mRNA_C-linearis_contig10.437.1 vs. uniprot
Match: A0A6H5JTX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTX6_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 2.620e-8
Identity = 43/80 (53.75%), Postives = 48/80 (60.00%), Query Frame = -2
Query:   96 NPTASQAKERAARGDLNRRLHGGSRANHNRKARRGANFIAFGYRGDIMLPVTEEARCASVRAPSRNSAANVLFPRYFSFD 335
            NPTA+QAKERAA+ DL R LHG SRANH   AR+G +FIA G RG IMLP        S R  +    A  L  RY S D
Sbjct:  163 NPTAAQAKERAAQEDLQRSLHGISRANH---ARKGEDFIASGIRGRIMLP--------SDRRRAVCYDAGALEERYLSCD 231          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.437.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5K630_9PHAE3.380e-3763.39Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZP5_9PHAE1.510e-3062.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5X1_9PHAE6.830e-2957.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L2C2_9PHAE2.330e-2872.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KB63_9PHAE1.050e-2665.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JS87_9PHAE6.510e-2666.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZI2_ECTSI3.790e-2153.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K6I9_9PHAE5.620e-2153.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JR14_9PHAE6.290e-1850.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTX6_9PHAE2.620e-853.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:187153..187566 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size414
Cds size414
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927325.4204156-CDS-C-linearis_contig10:187152..1875661622927325.4204156-CDS-C-linearis_contig10:187152..187566Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 187153..187566 +
1690879627.510362-CDS-C-linearis_contig10:187152..1875661690879627.510362-CDS-C-linearis_contig10:187152..187566Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 187153..187566 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.437.1prot_C-linearis_contig10.437.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 187153..187566 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.437.1

>prot_C-linearis_contig10.437.1 ID=prot_C-linearis_contig10.437.1|Name=mRNA_C-linearis_contig10.437.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=138bp
MKGLNIFVAWPAEAGVDLDDALLSSLGSGPSLSKLKYRGNRTFAAEFREG
ARTEAHRASSVTGSMMSPRYPKAMKFAPLRAFRLWFAREPPWSRRLRSPR
AALSFACEAVGFLRSEALAHMTEAVFHDVLLRQKAEM*
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mRNA from alignment at C-linearis_contig10:187153..187566+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.437.1 ID=mRNA_C-linearis_contig10.437.1|Name=mRNA_C-linearis_contig10.437.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=414bp|location=Sequence derived from alignment at C-linearis_contig10:187153..187566+ (Chordaria linearis ClinC8C monoicous)
ATGAAGGGGTTGAACATCTTCGTGGCCTGGCCTGCAGAGGCGGGCGTCGA CTTGGACGACGCACTACTCTCATCCTTAGGGTCTGGGCCAAGTCTGTCAA AGCTAAAATACCGCGGGAACAGAACATTTGCGGCAGAGTTTCGCGAGGGC GCCCGCACTGAAGCACACCGAGCTTCTTCCGTTACTGGTAGCATGATGTC CCCACGGTATCCGAAGGCGATGAAATTCGCTCCCCTCCGCGCCTTCCGGT TGTGGTTTGCGCGGGAACCCCCGTGGAGTCGACGGTTGAGATCCCCTCGT GCGGCTCTTTCCTTCGCTTGCGAAGCCGTCGGGTTCCTGCGTTCCGAGGC CCTGGCGCATATGACCGAAGCAGTGTTCCACGACGTCCTGTTGCGGCAAA AGGCGGAGATGTGA
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Coding sequence (CDS) from alignment at C-linearis_contig10:187153..187566+

>mRNA_C-linearis_contig10.437.1 ID=mRNA_C-linearis_contig10.437.1|Name=mRNA_C-linearis_contig10.437.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=828bp|location=Sequence derived from alignment at C-linearis_contig10:187153..187566+ (Chordaria linearis ClinC8C monoicous)
ATGAAGGGGTTGAACATCTTCGTGGCCTGGCCTGCAGAGGCGGGCGTCGA
CTTGGACGACGCACTACTCTCATCCTTAGGGTCTGGGCCAAGTCTGTCAA
AGCTAAAATACCGCGGGAACAGAACATTTGCGGCAGAGTTTCGCGAGGGC
GCCCGCACTGAAGCACACCGAGCTTCTTCCGTTACTGGTAGCATGATGTC
CCCACGGTATCCGAAGGCGATGAAATTCGCTCCCCTCCGCGCCTTCCGGT
TGTGGTTTGCGCGGGAACCCCCGTGGAGTCGACGGTTGAGATCCCCTCGT
GCGGCTCTTTCCTTCGCTTGCGAAGCCGTCGGGTTCCTGCGTTCCGAGGC
CCTGGCGCATATGACCGAAGCAGTGTTCCACGACGTCCTGTTGCGGCAAA
AGGCGGAGATGTGAATGAAGGGGTTGAACATCTTCGTGGCCTGGCCTGCA
GAGGCGGGCGTCGACTTGGACGACGCACTACTCTCATCCTTAGGGTCTGG
GCCAAGTCTGTCAAAGCTAAAATACCGCGGGAACAGAACATTTGCGGCAG
AGTTTCGCGAGGGCGCCCGCACTGAAGCACACCGAGCTTCTTCCGTTACT
GGTAGCATGATGTCCCCACGGTATCCGAAGGCGATGAAATTCGCTCCCCT
CCGCGCCTTCCGGTTGTGGTTTGCGCGGGAACCCCCGTGGAGTCGACGGT
TGAGATCCCCTCGTGCGGCTCTTTCCTTCGCTTGCGAAGCCGTCGGGTTC
CTGCGTTCCGAGGCCCTGGCGCATATGACCGAAGCAGTGTTCCACGACGT
CCTGTTGCGGCAAAAGGCGGAGATGTGA
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