mRNA_C-linearis_contig10.472.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.472.1
Unique NamemRNA_C-linearis_contig10.472.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.472.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:1000126..1002013 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size905
Cds size534
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.472.1prot_C-linearis_contig10.472.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 1000540..1002013 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927322.4607446-UTR-C-linearis_contig10:1000125..10003961622927322.4607446-UTR-C-linearis_contig10:1000125..1000396Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 1000126..1000396 +
1690879625.8768916-UTR-C-linearis_contig10:1000125..10003961690879625.8768916-UTR-C-linearis_contig10:1000125..1000396Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 1000126..1000396 +
1622927322.471805-UTR-C-linearis_contig10:1000439..10005391622927322.471805-UTR-C-linearis_contig10:1000439..1000539Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 1000440..1000539 +
1690879625.8866796-UTR-C-linearis_contig10:1000439..10005391690879625.8866796-UTR-C-linearis_contig10:1000439..1000539Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 1000440..1000539 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927322.4834087-CDS-C-linearis_contig10:1000539..10006521622927322.4834087-CDS-C-linearis_contig10:1000539..1000652Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 1000540..1000652 +
1690879625.8956933-CDS-C-linearis_contig10:1000539..10006521690879625.8956933-CDS-C-linearis_contig10:1000539..1000652Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 1000540..1000652 +
1622927322.4944515-CDS-C-linearis_contig10:1001592..10020131622927322.4944515-CDS-C-linearis_contig10:1001592..1002013Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 1001593..1002013 +
1690879625.90543-CDS-C-linearis_contig10:1001592..10020131690879625.90543-CDS-C-linearis_contig10:1001592..1002013Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 1001593..1002013 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.472.1

>prot_C-linearis_contig10.472.1 ID=prot_C-linearis_contig10.472.1|Name=mRNA_C-linearis_contig10.472.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=178bp
MGEEGKGKGRTSRGLGSVFPAYTSTTTSCTGASGAHLGFRAPSEFFMDGS
GRRLLVGSRSPTHAAARGALRGVDRRHQHQHFSQELEQERENGQEQQRRR
PVVRLLRMDDPSGAARLLPPSDSSVEAASPPASPAGAAAALQPPVVTTTP
TPTPATGGVVKKEIGTDSGEPREHGGIK
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mRNA from alignment at C-linearis_contig10:1000126..1002013+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.472.1 ID=mRNA_C-linearis_contig10.472.1|Name=mRNA_C-linearis_contig10.472.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1888bp|location=Sequence derived from alignment at C-linearis_contig10:1000126..1002013+ (Chordaria linearis ClinC8C monoicous)
CAGTAGTCTGTCCTTGCCCCTATTTCGGGATATGTATGTATGTATGTAAT
GGTTGCATCCACTACATGCCCTCGTATACTACGAGATAACAGGGGAGAGG
GCATGCTTCAGGGGTATGACCGAGCTCTGGAGCTAGTGGCGCCGGGGGAA
GCTCAGCGGCGCCTCTGCGCAGCCCACAACAGGGAGTCTCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAAGGACCACCTGCCCGCCACCCTCGCACCAACC
AAGCTCTCCGGTCTGTCGGGGGTGGTGGTGGAGGAGATCCGGCCGCGGCG
GCAGTAACAACTTTGGGCGCCGGGGTGACACGCTCTTCTACCCCGTCAAC
AATTGCGGGGGACGGCGGTGCCGCCCTCAGCGGCGAGTCGGACAGGGATA
GTGGCGCGATCGCCATGGGAGAAGAAGGCAAAGGCAAAGGCAGGACCTCT
CGAGGCCTTGGCTCGGTGTTTCCTGCCTACACCTCCACCACCACCAGCTG
CACGGGGGCGTCGGGCGCTCACCTCGGGTATGCAGGGCGAAAAAATCGAC
GGCCGCGTAGTTATGCGTGCTTTTTGTCGCTCCTTGTCCTTTCGGATCGT
GTCGAGAGGAATGACAGATAGGAATGCTCGGATCGTGTCGAGGGGAATGG
CAGATAGGAATGCCTTGACTCCTGGCGCGCGAGAAGGCTTGATGGCCAGC
CAGGCACACAGACATCCCAATGCTTAGTGTGTGATGTTGGTAACACAGGG
AAAAATGCCAAAAAACGAGGTTATACCGCAATATAACGGCTATTTTATTT
ATTTATTCCGAGCACATTAGAGCCGGTCGCCCCGGTGGACTAGATAGTGG
TTTAACCTCGAACCCACTAGCAGCAAAGTCTGGAGTTCGATTCCAAGCAA
AAGTGTTTCTTTTGCGACTTTGCAGGTGAAAGCGATAAATAGCTGAAAAA
GCTCGTGAGTACCAAACTTCGACTTAGCACGTTGACGAGGGAAAGGGATG
GCTGCACCCTTCTCGCGATAAAATCCAAGGCAAGCACCGCAGGAGGAAGG
TGGGGCAAAAAGAAACAGAAAAAGAAGAAAAAAGCCCCAGTGTTTACCCC
CTCCTGTGTGACCCCGGTTGGTTCTAGTTGTACAGAAAAATACACTGAAC
AAGTGTAGTACTCTAAATACACCGCAACGTGTAGTACATGTCTCGCATTG
ATCGGAAAGGGACTGTCGCCACAATAAATGGGACGAAAACACACACACAC
ACATGCGAAACGGAACGAGAAATAGGCCTAAAAAGCAACATGCCTCCTCG
TATTTTGCTCTATTCCTTAGCCGCCTGTGACCCCGCTGCCTTAAACCGTC
GCACAACGAACGCACCCGAAACATTGGCCTCACGTGTACTTATATTGCTC
TCCCGATGCTCTGTTCCTATGGTGCATCCATCTATATATATACCCCCACC
TCCACCTCTCCAAGCAGGTTCCGGGCCCCCAGCGAGTTTTTCATGGACGG
CAGCGGCAGACGGCTTCTAGTCGGATCTCGATCTCCTACCCATGCTGCGG
CGCGAGGAGCCTTGCGCGGCGTTGATCGGCGGCACCAGCACCAGCACTTC
TCACAGGAGCTGGAGCAGGAGCGGGAGAACGGGCAGGAGCAACAACGCCG
GCGGCCCGTGGTGCGACTCCTCCGCATGGACGACCCCTCCGGCGCCGCGC
GTCTTCTTCCTCCCTCCGACTCATCCGTCGAAGCAGCATCACCCCCGGCG
TCACCTGCAGGAGCAGCAGCAGCACTTCAGCCGCCGGTGGTAACTACAAC
ACCAACACCAACACCGGCCACGGGTGGTGTCGTCAAGAAGGAGATCGGAA
CGGACAGCGGGGAGCCCCGCGAGCACGGCGGCATCAAG
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Coding sequence (CDS) from alignment at C-linearis_contig10:1000126..1002013+

>mRNA_C-linearis_contig10.472.1 ID=mRNA_C-linearis_contig10.472.1|Name=mRNA_C-linearis_contig10.472.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1068bp|location=Sequence derived from alignment at C-linearis_contig10:1000126..1002013+ (Chordaria linearis ClinC8C monoicous)
ATGGGAGAAGAAGGCAAAGGCAAAGGCAGGACCTCTCGAGGCCTTGGCTC
GGTGTTTCCTGCCTACACCTCCACCACCACCAGCTGCACGGGGGCGTCGG
GCGCTCACCTCGGATGGGAGAAGAAGGCAAAGGCAAAGGCAGGACCTCTC
GAGGCCTTGGCTCGGTGTTTCCTGCCTACACCTCCACCACCACCAGCTGC
ACGGGGGCGTCGGGCGCTCACCTCGGGTTCCGGGCCCCCAGCGAGTTTTT
CATGGACGGCAGCGGCAGACGGCTTCTAGTCGGATCTCGATCTCCTACCC
ATGCTGCGGCGCGAGGAGCCTTGCGCGGCGTTGATCGGCGGCACCAGCAC
CAGCACTTCTCACAGGAGCTGGAGCAGGAGCGGGAGAACGGGCAGGAGCA
ACAACGCCGGCGGCCCGTGGTGCGACTCCTCCGCATGGACGACCCCTCCG
GCGCCGCGCGTCTTCTTCCTCCCTCCGACTCATCCGTCGAAGCAGCATCA
CCCCCGGCGTCACCTGCAGGAGCAGCAGCAGCACTTCAGCCGCCGGTGGT
AACTACAACACCAACACCAACACCGGCCACGGGTGGTGTCGTCAAGAAGG
AGATCGGAACGGACAGCGGGGAGCCCCGCGAGCACGGCGGCATCAAGGTT
CCGGGCCCCCAGCGAGTTTTTCATGGACGGCAGCGGCAGACGGCTTCTAG
TCGGATCTCGATCTCCTACCCATGCTGCGGCGCGAGGAGCCTTGCGCGGC
GTTGATCGGCGGCACCAGCACCAGCACTTCTCACAGGAGCTGGAGCAGGA
GCGGGAGAACGGGCAGGAGCAACAACGCCGGCGGCCCGTGGTGCGACTCC
TCCGCATGGACGACCCCTCCGGCGCCGCGCGTCTTCTTCCTCCCTCCGAC
TCATCCGTCGAAGCAGCATCACCCCCGGCGTCACCTGCAGGAGCAGCAGC
AGCACTTCAGCCGCCGGTGGTAACTACAACACCAACACCAACACCGGCCA
CGGGTGGTGTCGTCAAGAAGGAGATCGGAACGGACAGCGGGGAGCCCCGC
GAGCACGGCGGCATCAAG
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