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Homology
BLAST of mRNA_C-linearis_contig10.449.1 vs. uniprot
Match: A0A6H5KPZ6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPZ6_9PHAE) HSP 1 Score: 100 bits (249), Expect = 7.310e-20 Identity = 56/99 (56.57%), Postives = 67/99 (67.68%), Query Frame = 2
Query: 353 NTDVLSHLLDFVAEDQYLFFAAVSRAWTSVWRAAQRPAATRQVTPDTSESQLRESLEAGLPLDKAQLSAALARHGHLELLQLARERGCAWGAVTCSAAA 649
N D+L ++ FVAE Q+LFFA VSRAW W RPA T VT D+S SQLR S E GLP D+ +L AA+AR G+LELL+ AR GCAW +T S AA
Sbjct: 60 NVDLLRSIVRFVAEKQFLFFAPVSRAWREAWGC--RPAVTSWVTEDSSVSQLRYSFERGLPRDRPELCAAIARLGNLELLRSARGSGCAWNGLTFSEAA 156
BLAST of mRNA_C-linearis_contig10.449.1 vs. uniprot
Match: D8LDD9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDD9_ECTSI) HSP 1 Score: 92.4 bits (228), Expect = 4.420e-17 Identity = 49/97 (50.52%), Postives = 63/97 (64.95%), Query Frame = 2
Query: 359 DVLSHLLDFVAEDQYLFFAAVSRAWTSVWRAAQRPAATRQVTPDTSESQLRESLEAGLPLDKAQLSAALARHGHLELLQLARERGCAWGAVTCSAAA 649
DV+SH +FV +DQ+LFFA+VSRAW WR RP +TR +TPDTS SQLR S++ GL + A+A G L+LL+ AR G W +TC AA
Sbjct: 10 DVISHASEFVHDDQFLFFASVSRAWRGAWRG--RPTSTRAITPDTSPSQLRHSVDCGLSPGGTAVCTAIASLGRLDLLRAARALGFRWDKMTCWKAA 104
BLAST of mRNA_C-linearis_contig10.449.1 vs. uniprot
Match: D7FH77_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FH77_ECTSI) HSP 1 Score: 83.2 bits (204), Expect = 6.820e-14 Identity = 43/103 (41.75%), Postives = 60/103 (58.25%), Query Frame = 2
Query: 326 PTAVGLAITNTDVLSHLLDFVAEDQYLFFAAVSRAWTSVWRAAQRPAATRQVTPDTSESQLRESLEAGLPLDKAQLSAALARHGHLELLQLARERGCAWGAVT 634
P V + N D+L L+ FVA++ +LFF V R W + W RP TR T D + +QL+ + GL +L AA+AR G ++LL+LAR+ GC WGA T
Sbjct: 3 PGIVPSVLNNPDILGCLISFVADESFLFFGPVCRDWRAAW--GNRPTTTRIATSDLTPTQLQRGFDCGLTRTNPELCAAIARLGDVDLLELARDNGCRWGAST 103
BLAST of mRNA_C-linearis_contig10.449.1 vs. uniprot
Match: A0A6H5L0J7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0J7_9PHAE) HSP 1 Score: 73.9 bits (180), Expect = 2.980e-11 Identity = 42/93 (45.16%), Postives = 56/93 (60.22%), Query Frame = 2
Query: 359 DVLSHLLDFVAEDQYLFFAAVSRAWTSVWRAAQRPAATRQVTPDTSESQLRESLEAGLPLDKAQLSAALARHGHLELLQLARERGCAWGAVTC 637
D++S + +FV ++QYLFFA+VSR W VW +RP T+ +T DTS QL S E GL A + +A G L+LL+ AR GC W TC
Sbjct: 8 DIVSTVAEFVDDNQYLFFASVSRGWRDVW--GKRPTVTKALTADTSVPQLSLSFECGLRRTAA-VCETVAGLGRLDLLRRARAMGCQWNENTC 97
BLAST of mRNA_C-linearis_contig10.449.1 vs. uniprot
Match: D7FMS7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS7_ECTSI) HSP 1 Score: 74.7 bits (182), Expect = 8.270e-11 Identity = 43/93 (46.24%), Postives = 57/93 (61.29%), Query Frame = 2
Query: 359 DVLSHLLDFVAEDQYLFFAAVSRAWTSVWRAAQRPAATRQVTPDTSESQLRESLEAGLPLDKAQLSAALARHGHLELLQLARERGCAWGAVTC 637
D++S + +FV ++QYLFFA+VSR W VW +RP T+ +T DTS SQL S E GL A + +A G L+LL+ AR GC W TC
Sbjct: 10 DIVSTVGEFVDDNQYLFFASVSRGWRDVW--GKRPTVTKALTADTSVSQLSLSFECGLRRTAA-VCETVAGLGRLDLLRRARAMGCPWNENTC 99
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 68.9 |
| Seed ortholog evalue | 4.7e-09 |
| Seed eggNOG ortholog | 2880.D7FJY0 |
| KEGG ko | ko:K06052 |
| KEGG Pathway | ko01522,ko04330,ko04371,ko04658,ko04668,ko05165,ko05200,ko05224,map01522,map04330,map04371,map04658,map04668,map05165,map05200,map05224 |
| Hectar predicted targeting category | other localisation |
| EggNOG OGs | 2AMK4@1,2RZCC@2759 |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko04090 |
| Exons | 2 |
| Model size | 1801 |
| Cds size | 954 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622927322.2566488-UTR-C-linearis_contig10:408902..409505 | 1622927322.2566488-UTR-C-linearis_contig10:408902..409505 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig10 408903..409505 - |
| 1690879625.7625678-UTR-C-linearis_contig10:408902..409505 | 1690879625.7625678-UTR-C-linearis_contig10:408902..409505 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig10 408903..409505 - |
| 1622927322.2926915-UTR-C-linearis_contig10:412253..412497 | 1622927322.2926915-UTR-C-linearis_contig10:412253..412497 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig10 412254..412497 - |
| 1690879625.7958827-UTR-C-linearis_contig10:412253..412497 | 1690879625.7958827-UTR-C-linearis_contig10:412253..412497 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig10 412254..412497 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622927322.2664757-CDS-C-linearis_contig10:409505..410417 | 1622927322.2664757-CDS-C-linearis_contig10:409505..410417 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 409506..410417 - |
| 1690879625.7757072-CDS-C-linearis_contig10:409505..410417 | 1690879625.7757072-CDS-C-linearis_contig10:409505..410417 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 409506..410417 - |
| 1622927322.2806287-CDS-C-linearis_contig10:412211..412253 | 1622927322.2806287-CDS-C-linearis_contig10:412211..412253 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 412212..412253 - |
| 1690879625.7851439-CDS-C-linearis_contig10:412211..412253 | 1690879625.7851439-CDS-C-linearis_contig10:412211..412253 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 412212..412253 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.449.1 >prot_C-linearis_contig10.449.1 ID=prot_C-linearis_contig10.449.1|Name=mRNA_C-linearis_contig10.449.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=318bp
MGPQQQGAGDGLAEGTASSSTDGAPSAPTAVGLAITNTDVLSHLLDFVAE DQYLFFAAVSRAWTSVWRAAQRPAATRQVTPDTSESQLRESLEAGLPLDK AQLSAALARHGHLELLQLARERGCAWGAVTCSAAAGAGHLELLQWCKYNG CPWDDRTLTEAARGDHAEVLEWARMFGCEVSMGVPTAAAGAGNLNLLKYL IQDGFPVCAGACGAAAKSGHLEILEYLVENECPVDEMTLFGVVLNGQLAV VEWALGEGVEFNDLGEYAFCDAVKKGRLAVVRLLHRHGCPWDEASCLAAA IEGGHEEIASWIRENRS* back to topmRNA from alignment at C-linearis_contig10:408903..412497- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-linearis_contig10.449.1 ID=mRNA_C-linearis_contig10.449.1|Name=mRNA_C-linearis_contig10.449.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3595bp|location=Sequence derived from alignment at C-linearis_contig10:408903..412497- (Chordaria linearis ClinC8C monoicous) CCTCTCTCGTGAGTCTCTTGTGCCGCTCACATATCAGTCGACTAGGACCC
TACGCTTCATCCAAGCGAACGACCTGTCCCTTCTTGATTCAGCGGGGCAG
CAGGCAGCCCCTGCGAACCAGGGAGGAGAGATGTCGACTGGTGTCTAGCG
GAAATCTCGCTCTTGTCCGCACACACACACACACGACACACAGGATCTAG
ACTACTTCTAGACAGCAGTAGAGAGCTGGGTTTGGAGATTGGAGATGGGG
CCACAGCAACAAGGAGCCGGAGACGGGTTAGCAGAGGTGAGTCGGTACTG
GAATGGTACTTCGACAATCCCTCAACCGTGGTGGCTGTGTATTGTCATCT
CCGTCGCTGCAGAGAGCAGGAGCCCGCGACACATGAATCCTGAATCCGAG
TTGGAGTTGCGCCGACGTTTTGGAGGTGCATCCGCTCCACAACCTCCTAG
CAAAAGCACCACCGCCGCATGGCATTGCCACACAACCTTTCAAGCGTGAC
ACTTTGTTGATTGTTAGCTCGAGCCAGGGGAGAGCTGTCATATGGTAGAA
CGGCCGCTCGCCGCAGCCGAGCAACAACTTCAAACAATCACACCACAGCA
AGCAGTCGTCGTGCCGTCTACCAGGTGTCGTCTACTGCTGTACCTATGTA
TGTACCAGCACCAAGATCCATAGATCCCGAGACTACAGTGGTAGACTGGT
TACTTCGTACAGTGCCAATATATCGCTGACAACGGCACAGGCGCGCCACA
CTTCCTTTCTTTGAGGGACTGATGGAGTCGCTGGGTTGGGTACCCCGCCG
ATGATCACCCGTGAGTATTAGAAACAGCAAGCAGCGTTGTGGGTTTGTTG
CGGCCACCGATTTTTAGGGGCACACGCGTTCGTTACTGCGTTGTCCTGGG
GTATACGTGTATGAGTCTAGTCTGCGTTGGGTTAGCGTCGACACGCGCCC
CTCCTCTCGATCGTCTCTTGAGAGCTTAATCCAGAGCTTTGCACAGCATC
TGCTTATCTTCTGACCAAGCACCTAACTTCCAGGAGGACGCCGCATCGAA
CTCGGACGGTCAGTTCGTGATCTTTGTCTTGTCATCTGCACGATGCTATA
GAGCATCAAGGTCCGACACATTACACATCCTCGGTCTAGACTGTTGGTGT
GCCTCGAGCAGTACACGTAGTTATTGTCTTTCTTTCAATCATGTCATGAA
GACCCCAAGCGACAACCACGAGACCGTAACAGGTTGCCTTGAGTTTCGCC
GGAGTTTCGAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCATACAC
ATCTCTCCCATACACACCCATAACAAAGAGGTGACCGGCTTACTCAGAAC
CGTACCACTTGCATCGAATGGGGATCTTGTAGCAGTCAGGACAGGACAGC
AGTATCTAGTCGACCGCGGCCGGTGCTTGTTGCTTCGCCCTGTTGAGTTT
GCGAGGCATCACCGGTATGCGCCCCAGTGTCGTGAGTCTGAATCTATCCA
CTCTGTGCGGAATGTACATATATACAGCACTTGCACACCACACCACCGCA
CCACGTTCGAAAAACGCTTGGAGTTTCGCCCTCGGGCGTCGGGCAGCGTT
TGGTGCCTGCCTGGTATTTTCGATGAGAATAAACTGGGAGCGCCCGTTTG
ACGTTCACACACACGGTGCCCCCGGCTTCTTTTTCGTCCTCTGTTGCCCC
ACGCGTGTAGATGGGGAGGCACGGCTCACCTTAATTCGATTTCAAAAACA
TAATCCCCGCATAGTGCCAGCCAGCGGTACAACACCTCCGATTCGACCAA
TCTTATCCCCAAGAGCTCCCCTGGGCCCCCGCTGGCAAGAAACGTATGAC
TCGCGGCTCGATTGAGTTTTCCGTCACCACTTTTCGAACGTAGCGCTTGG
GATAAGGGTTGAATGTAAGATCCACGATCGAGCCACATGCATGCTTCTTA
GCCCAACTTTCTTATTTTTCTTATTTTCTTACGACAGTTTCTCTTTTACA
GCGGGCGCCCTCCGTACTGCGAACACCTTCCTTTCGGCTCGTTTGCCCCC
TTCCCTCAAAACGAATCGGGCACCAAGCAGGGCACCGCCAGCTCATCCAC
CGATGGAGCACCAAGCGCCCCAACAGCAGTCGGCCTCGCCATCACCAACA
CGGACGTTTTGAGCCACCTCCTAGACTTCGTGGCAGAGGACCAATATCTC
TTCTTCGCCGCGGTCTCGCGAGCCTGGACGTCGGTGTGGAGGGCTGCCCA
ACGCCCCGCGGCCACGAGGCAAGTCACGCCAGACACGTCCGAGTCTCAGC
TGCGAGAGAGTCTCGAGGCCGGCTTGCCTCTAGACAAGGCACAGCTGTCG
GCAGCCCTCGCACGCCACGGGCATCTAGAGCTGCTGCAGCTGGCCAGGGA
GCGCGGCTGCGCGTGGGGCGCGGTGACCTGTTCCGCCGCCGCCGGGGCGG
GACACCTGGAGCTCCTCCAGTGGTGCAAGTACAACGGGTGCCCATGGGAC
GACCGCACGCTGACAGAGGCCGCGCGCGGCGACCACGCGGAGGTCCTGGA
GTGGGCGAGGATGTTCGGCTGCGAGGTGAGCATGGGCGTCCCCACCGCGG
CGGCGGGGGCGGGGAACCTGAACCTCCTCAAGTACTTGATCCAGGACGGG
TTTCCGGTTTGTGCGGGGGCTTGCGGCGCGGCGGCTAAATCCGGCCACCT
GGAAATCCTGGAGTACTTGGTCGAGAACGAGTGCCCTGTCGACGAGATGA
CGCTCTTTGGGGTCGTTCTCAACGGCCAGCTAGCTGTCGTGGAGTGGGCG
CTCGGGGAAGGGGTCGAGTTTAACGACCTCGGGGAGTACGCCTTCTGCGA
CGCCGTGAAGAAGGGCCGATTGGCGGTGGTCCGTCTTCTGCATCGGCACG
GGTGTCCGTGGGACGAGGCGAGCTGTTTGGCGGCGGCGATCGAGGGTGGT
CACGAGGAAATCGCTAGCTGGATAAGGGAGAACCGATCGTAAACGTTCGG
GCTTGCATCTTGCGTGTGTGTTTGTGGCCTTCAAAAACAGATGGTACTGC
ACACGAGATTATTAGCATTTTGTCTGCAGATTTTAACTTTTCTCGCAAGG
CAACTTCATACTCCCATAAAAGCCGGTGTTCGGGCGGACCGAGCGTGTTG
CCTGTCTCTCTTGCTTTCTCCCGTCACGCGCCACAAGGGTTTGCTTCTGA
GCTTTATTGACTCGTTCAAGCGGCGTGCCTGCTTGCCCTGTTGGTTGCAA
CCACCCTGTAGCTTTTGTCCAAGTACTTCAAAGCCTGCGTTTTTTTGCCT
GCTGGTTGCCAATCTTTCGCTGGGAGTTTTCAACGATTGCGTGGGTGGTA
AGGATATCTGTTGTGGGTGCAGCAGGGTCTTGACGTTGAGATGCTTTCCG
TCAGTGCTCGCCTTCACGGCACGGTTGGAGGTTGGGGATAAAACCTACGG
GTGGATGCACCGACCACACAACTATTGGCTCTTCCTTTTTGTTTTCATGT
AGTATGTTTTGCCCGTTTGGTACAGCTTTGCGTCGAGAACTTCCTCCGGG
ATCGGAACGTTTGTCGCCCCCGGTGCAATTCAAGGCGCCACTTTC back to topCoding sequence (CDS) from alignment at C-linearis_contig10:408903..412497- >mRNA_C-linearis_contig10.449.1 ID=mRNA_C-linearis_contig10.449.1|Name=mRNA_C-linearis_contig10.449.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1908bp|location=Sequence derived from alignment at C-linearis_contig10:408903..412497- (Chordaria linearis ClinC8C monoicous) ATGGGGCCACAGCAACAAGGAGCCGGAGACGGGTTAGCAGAGATGGGGCC ACAGCAACAAGGAGCCGGAGACGGGTTAGCAGAGGGCACCGCCAGCTCAT CCACCGATGGAGCACCAAGCGCCCCAACAGCAGTCGGCCTCGCCATCACC AACACGGACGTTTTGAGCCACCTCCTAGACTTCGTGGCAGAGGACCAATA TCTCTTCTTCGCCGCGGTCTCGCGAGCCTGGACGTCGGTGTGGAGGGCTG CCCAACGCCCCGCGGCCACGAGGCAAGTCACGCCAGACACGTCCGAGTCT CAGCTGCGAGAGAGTCTCGAGGCCGGCTTGCCTCTAGACAAGGCACAGCT GTCGGCAGCCCTCGCACGCCACGGGCATCTAGAGCTGCTGCAGCTGGCCA GGGAGCGCGGCTGCGCGTGGGGCGCGGTGACCTGTTCCGCCGCCGCCGGG GCGGGACACCTGGAGCTCCTCCAGTGGTGCAAGTACAACGGGTGCCCATG GGACGACCGCACGCTGACAGAGGCCGCGCGCGGCGACCACGCGGAGGTCC TGGAGTGGGCGAGGATGTTCGGCTGCGAGGTGAGCATGGGCGTCCCCACC GCGGCGGCGGGGGCGGGGAACCTGAACCTCCTCAAGTACTTGATCCAGGA CGGGTTTCCGGTTTGTGCGGGGGCTTGCGGCGCGGCGGCTAAATCCGGCC ACCTGGAAATCCTGGAGTACTTGGTCGAGAACGAGTGCCCTGTCGACGAG ATGACGCTCTTTGGGGTCGTTCTCAACGGCCAGCTAGCTGTCGTGGAGTG GGCGCTCGGGGAAGGGGTCGAGTTTAACGACCTCGGGGAGTACGCCTTCT GCGACGCCGTGAAGAAGGGCCGATTGGCGGTGGTCCGTCTTCTGCATCGG CACGGGTGTCCGTGGGACGAGGCGAGCTGTTTGGCGGCGGCGATCGAGGG TGGTCACGAGGAAATCGCTAGCTGGATAAGGGAGAACCGATCGTAAGGCA CCGCCAGCTCATCCACCGATGGAGCACCAAGCGCCCCAACAGCAGTCGGC CTCGCCATCACCAACACGGACGTTTTGAGCCACCTCCTAGACTTCGTGGC AGAGGACCAATATCTCTTCTTCGCCGCGGTCTCGCGAGCCTGGACGTCGG TGTGGAGGGCTGCCCAACGCCCCGCGGCCACGAGGCAAGTCACGCCAGAC ACGTCCGAGTCTCAGCTGCGAGAGAGTCTCGAGGCCGGCTTGCCTCTAGA CAAGGCACAGCTGTCGGCAGCCCTCGCACGCCACGGGCATCTAGAGCTGC TGCAGCTGGCCAGGGAGCGCGGCTGCGCGTGGGGCGCGGTGACCTGTTCC GCCGCCGCCGGGGCGGGACACCTGGAGCTCCTCCAGTGGTGCAAGTACAA CGGGTGCCCATGGGACGACCGCACGCTGACAGAGGCCGCGCGCGGCGACC ACGCGGAGGTCCTGGAGTGGGCGAGGATGTTCGGCTGCGAGGTGAGCATG GGCGTCCCCACCGCGGCGGCGGGGGCGGGGAACCTGAACCTCCTCAAGTA CTTGATCCAGGACGGGTTTCCGGTTTGTGCGGGGGCTTGCGGCGCGGCGG CTAAATCCGGCCACCTGGAAATCCTGGAGTACTTGGTCGAGAACGAGTGC CCTGTCGACGAGATGACGCTCTTTGGGGTCGTTCTCAACGGCCAGCTAGC TGTCGTGGAGTGGGCGCTCGGGGAAGGGGTCGAGTTTAACGACCTCGGGG AGTACGCCTTCTGCGACGCCGTGAAGAAGGGCCGATTGGCGGTGGTCCGT CTTCTGCATCGGCACGGGTGTCCGTGGGACGAGGCGAGCTGTTTGGCGGC GGCGATCGAGGGTGGTCACGAGGAAATCGCTAGCTGGATAAGGGAGAACC GATCGTAA back to top
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