mRNA_C-linearis_contig10.449.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.449.1
Unique NamemRNA_C-linearis_contig10.449.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig10.449.1 vs. uniprot
Match: A0A6H5KPZ6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPZ6_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 7.310e-20
Identity = 56/99 (56.57%), Postives = 67/99 (67.68%), Query Frame = 2
Query:  353 NTDVLSHLLDFVAEDQYLFFAAVSRAWTSVWRAAQRPAATRQVTPDTSESQLRESLEAGLPLDKAQLSAALARHGHLELLQLARERGCAWGAVTCSAAA 649
            N D+L  ++ FVAE Q+LFFA VSRAW   W    RPA T  VT D+S SQLR S E GLP D+ +L AA+AR G+LELL+ AR  GCAW  +T S AA
Sbjct:   60 NVDLLRSIVRFVAEKQFLFFAPVSRAWREAWGC--RPAVTSWVTEDSSVSQLRYSFERGLPRDRPELCAAIARLGNLELLRSARGSGCAWNGLTFSEAA 156          
BLAST of mRNA_C-linearis_contig10.449.1 vs. uniprot
Match: D8LDD9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDD9_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 4.420e-17
Identity = 49/97 (50.52%), Postives = 63/97 (64.95%), Query Frame = 2
Query:  359 DVLSHLLDFVAEDQYLFFAAVSRAWTSVWRAAQRPAATRQVTPDTSESQLRESLEAGLPLDKAQLSAALARHGHLELLQLARERGCAWGAVTCSAAA 649
            DV+SH  +FV +DQ+LFFA+VSRAW   WR   RP +TR +TPDTS SQLR S++ GL      +  A+A  G L+LL+ AR  G  W  +TC  AA
Sbjct:   10 DVISHASEFVHDDQFLFFASVSRAWRGAWRG--RPTSTRAITPDTSPSQLRHSVDCGLSPGGTAVCTAIASLGRLDLLRAARALGFRWDKMTCWKAA 104          
BLAST of mRNA_C-linearis_contig10.449.1 vs. uniprot
Match: D7FH77_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FH77_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 6.820e-14
Identity = 43/103 (41.75%), Postives = 60/103 (58.25%), Query Frame = 2
Query:  326 PTAVGLAITNTDVLSHLLDFVAEDQYLFFAAVSRAWTSVWRAAQRPAATRQVTPDTSESQLRESLEAGLPLDKAQLSAALARHGHLELLQLARERGCAWGAVT 634
            P  V   + N D+L  L+ FVA++ +LFF  V R W + W    RP  TR  T D + +QL+   + GL     +L AA+AR G ++LL+LAR+ GC WGA T
Sbjct:    3 PGIVPSVLNNPDILGCLISFVADESFLFFGPVCRDWRAAW--GNRPTTTRIATSDLTPTQLQRGFDCGLTRTNPELCAAIARLGDVDLLELARDNGCRWGAST 103          
BLAST of mRNA_C-linearis_contig10.449.1 vs. uniprot
Match: A0A6H5L0J7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0J7_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 2.980e-11
Identity = 42/93 (45.16%), Postives = 56/93 (60.22%), Query Frame = 2
Query:  359 DVLSHLLDFVAEDQYLFFAAVSRAWTSVWRAAQRPAATRQVTPDTSESQLRESLEAGLPLDKAQLSAALARHGHLELLQLARERGCAWGAVTC 637
            D++S + +FV ++QYLFFA+VSR W  VW   +RP  T+ +T DTS  QL  S E GL    A +   +A  G L+LL+ AR  GC W   TC
Sbjct:    8 DIVSTVAEFVDDNQYLFFASVSRGWRDVW--GKRPTVTKALTADTSVPQLSLSFECGLRRTAA-VCETVAGLGRLDLLRRARAMGCQWNENTC 97          
BLAST of mRNA_C-linearis_contig10.449.1 vs. uniprot
Match: D7FMS7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS7_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 8.270e-11
Identity = 43/93 (46.24%), Postives = 57/93 (61.29%), Query Frame = 2
Query:  359 DVLSHLLDFVAEDQYLFFAAVSRAWTSVWRAAQRPAATRQVTPDTSESQLRESLEAGLPLDKAQLSAALARHGHLELLQLARERGCAWGAVTC 637
            D++S + +FV ++QYLFFA+VSR W  VW   +RP  T+ +T DTS SQL  S E GL    A +   +A  G L+LL+ AR  GC W   TC
Sbjct:   10 DIVSTVGEFVDDNQYLFFASVSRGWRDVW--GKRPTVTKALTADTSVSQLSLSFECGLRRTAA-VCETVAGLGRLDLLRRARAMGCPWNENTC 99          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.449.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KPZ6_9PHAE7.310e-2056.57Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LDD9_ECTSI4.420e-1750.52Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FH77_ECTSI6.820e-1441.75Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5L0J7_9PHAE2.980e-1145.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FMS7_ECTSI8.270e-1146.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:408903..412497 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.9
Seed ortholog evalue4.7e-09
Seed eggNOG ortholog2880.D7FJY0
KEGG koko:K06052
KEGG Pathwayko01522,ko04330,ko04371,ko04658,ko04668,ko05165,ko05200,ko05224,map01522,map04330,map04371,map04658,map04668,map05165,map05200,map05224
Hectar predicted targeting categoryother localisation
EggNOG OGs2AMK4@1,2RZCC@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04090
Exons2
Model size1801
Cds size954
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.449.1prot_C-linearis_contig10.449.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 409506..412253 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927322.2566488-UTR-C-linearis_contig10:408902..4095051622927322.2566488-UTR-C-linearis_contig10:408902..409505Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 408903..409505 -
1690879625.7625678-UTR-C-linearis_contig10:408902..4095051690879625.7625678-UTR-C-linearis_contig10:408902..409505Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 408903..409505 -
1622927322.2926915-UTR-C-linearis_contig10:412253..4124971622927322.2926915-UTR-C-linearis_contig10:412253..412497Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 412254..412497 -
1690879625.7958827-UTR-C-linearis_contig10:412253..4124971690879625.7958827-UTR-C-linearis_contig10:412253..412497Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 412254..412497 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927322.2664757-CDS-C-linearis_contig10:409505..4104171622927322.2664757-CDS-C-linearis_contig10:409505..410417Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 409506..410417 -
1690879625.7757072-CDS-C-linearis_contig10:409505..4104171690879625.7757072-CDS-C-linearis_contig10:409505..410417Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 409506..410417 -
1622927322.2806287-CDS-C-linearis_contig10:412211..4122531622927322.2806287-CDS-C-linearis_contig10:412211..412253Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 412212..412253 -
1690879625.7851439-CDS-C-linearis_contig10:412211..4122531690879625.7851439-CDS-C-linearis_contig10:412211..412253Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 412212..412253 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.449.1

>prot_C-linearis_contig10.449.1 ID=prot_C-linearis_contig10.449.1|Name=mRNA_C-linearis_contig10.449.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=318bp
MGPQQQGAGDGLAEGTASSSTDGAPSAPTAVGLAITNTDVLSHLLDFVAE
DQYLFFAAVSRAWTSVWRAAQRPAATRQVTPDTSESQLRESLEAGLPLDK
AQLSAALARHGHLELLQLARERGCAWGAVTCSAAAGAGHLELLQWCKYNG
CPWDDRTLTEAARGDHAEVLEWARMFGCEVSMGVPTAAAGAGNLNLLKYL
IQDGFPVCAGACGAAAKSGHLEILEYLVENECPVDEMTLFGVVLNGQLAV
VEWALGEGVEFNDLGEYAFCDAVKKGRLAVVRLLHRHGCPWDEASCLAAA
IEGGHEEIASWIRENRS*
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mRNA from alignment at C-linearis_contig10:408903..412497-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.449.1 ID=mRNA_C-linearis_contig10.449.1|Name=mRNA_C-linearis_contig10.449.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3595bp|location=Sequence derived from alignment at C-linearis_contig10:408903..412497- (Chordaria linearis ClinC8C monoicous)
CCTCTCTCGTGAGTCTCTTGTGCCGCTCACATATCAGTCGACTAGGACCC TACGCTTCATCCAAGCGAACGACCTGTCCCTTCTTGATTCAGCGGGGCAG CAGGCAGCCCCTGCGAACCAGGGAGGAGAGATGTCGACTGGTGTCTAGCG GAAATCTCGCTCTTGTCCGCACACACACACACACGACACACAGGATCTAG ACTACTTCTAGACAGCAGTAGAGAGCTGGGTTTGGAGATTGGAGATGGGG CCACAGCAACAAGGAGCCGGAGACGGGTTAGCAGAGGTGAGTCGGTACTG GAATGGTACTTCGACAATCCCTCAACCGTGGTGGCTGTGTATTGTCATCT CCGTCGCTGCAGAGAGCAGGAGCCCGCGACACATGAATCCTGAATCCGAG TTGGAGTTGCGCCGACGTTTTGGAGGTGCATCCGCTCCACAACCTCCTAG CAAAAGCACCACCGCCGCATGGCATTGCCACACAACCTTTCAAGCGTGAC ACTTTGTTGATTGTTAGCTCGAGCCAGGGGAGAGCTGTCATATGGTAGAA CGGCCGCTCGCCGCAGCCGAGCAACAACTTCAAACAATCACACCACAGCA AGCAGTCGTCGTGCCGTCTACCAGGTGTCGTCTACTGCTGTACCTATGTA TGTACCAGCACCAAGATCCATAGATCCCGAGACTACAGTGGTAGACTGGT TACTTCGTACAGTGCCAATATATCGCTGACAACGGCACAGGCGCGCCACA CTTCCTTTCTTTGAGGGACTGATGGAGTCGCTGGGTTGGGTACCCCGCCG ATGATCACCCGTGAGTATTAGAAACAGCAAGCAGCGTTGTGGGTTTGTTG CGGCCACCGATTTTTAGGGGCACACGCGTTCGTTACTGCGTTGTCCTGGG GTATACGTGTATGAGTCTAGTCTGCGTTGGGTTAGCGTCGACACGCGCCC CTCCTCTCGATCGTCTCTTGAGAGCTTAATCCAGAGCTTTGCACAGCATC TGCTTATCTTCTGACCAAGCACCTAACTTCCAGGAGGACGCCGCATCGAA CTCGGACGGTCAGTTCGTGATCTTTGTCTTGTCATCTGCACGATGCTATA GAGCATCAAGGTCCGACACATTACACATCCTCGGTCTAGACTGTTGGTGT GCCTCGAGCAGTACACGTAGTTATTGTCTTTCTTTCAATCATGTCATGAA GACCCCAAGCGACAACCACGAGACCGTAACAGGTTGCCTTGAGTTTCGCC GGAGTTTCGAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCATACAC ATCTCTCCCATACACACCCATAACAAAGAGGTGACCGGCTTACTCAGAAC CGTACCACTTGCATCGAATGGGGATCTTGTAGCAGTCAGGACAGGACAGC AGTATCTAGTCGACCGCGGCCGGTGCTTGTTGCTTCGCCCTGTTGAGTTT GCGAGGCATCACCGGTATGCGCCCCAGTGTCGTGAGTCTGAATCTATCCA CTCTGTGCGGAATGTACATATATACAGCACTTGCACACCACACCACCGCA CCACGTTCGAAAAACGCTTGGAGTTTCGCCCTCGGGCGTCGGGCAGCGTT TGGTGCCTGCCTGGTATTTTCGATGAGAATAAACTGGGAGCGCCCGTTTG ACGTTCACACACACGGTGCCCCCGGCTTCTTTTTCGTCCTCTGTTGCCCC ACGCGTGTAGATGGGGAGGCACGGCTCACCTTAATTCGATTTCAAAAACA TAATCCCCGCATAGTGCCAGCCAGCGGTACAACACCTCCGATTCGACCAA TCTTATCCCCAAGAGCTCCCCTGGGCCCCCGCTGGCAAGAAACGTATGAC TCGCGGCTCGATTGAGTTTTCCGTCACCACTTTTCGAACGTAGCGCTTGG GATAAGGGTTGAATGTAAGATCCACGATCGAGCCACATGCATGCTTCTTA GCCCAACTTTCTTATTTTTCTTATTTTCTTACGACAGTTTCTCTTTTACA GCGGGCGCCCTCCGTACTGCGAACACCTTCCTTTCGGCTCGTTTGCCCCC TTCCCTCAAAACGAATCGGGCACCAAGCAGGGCACCGCCAGCTCATCCAC CGATGGAGCACCAAGCGCCCCAACAGCAGTCGGCCTCGCCATCACCAACA CGGACGTTTTGAGCCACCTCCTAGACTTCGTGGCAGAGGACCAATATCTC TTCTTCGCCGCGGTCTCGCGAGCCTGGACGTCGGTGTGGAGGGCTGCCCA ACGCCCCGCGGCCACGAGGCAAGTCACGCCAGACACGTCCGAGTCTCAGC TGCGAGAGAGTCTCGAGGCCGGCTTGCCTCTAGACAAGGCACAGCTGTCG GCAGCCCTCGCACGCCACGGGCATCTAGAGCTGCTGCAGCTGGCCAGGGA GCGCGGCTGCGCGTGGGGCGCGGTGACCTGTTCCGCCGCCGCCGGGGCGG GACACCTGGAGCTCCTCCAGTGGTGCAAGTACAACGGGTGCCCATGGGAC GACCGCACGCTGACAGAGGCCGCGCGCGGCGACCACGCGGAGGTCCTGGA GTGGGCGAGGATGTTCGGCTGCGAGGTGAGCATGGGCGTCCCCACCGCGG CGGCGGGGGCGGGGAACCTGAACCTCCTCAAGTACTTGATCCAGGACGGG TTTCCGGTTTGTGCGGGGGCTTGCGGCGCGGCGGCTAAATCCGGCCACCT GGAAATCCTGGAGTACTTGGTCGAGAACGAGTGCCCTGTCGACGAGATGA CGCTCTTTGGGGTCGTTCTCAACGGCCAGCTAGCTGTCGTGGAGTGGGCG CTCGGGGAAGGGGTCGAGTTTAACGACCTCGGGGAGTACGCCTTCTGCGA CGCCGTGAAGAAGGGCCGATTGGCGGTGGTCCGTCTTCTGCATCGGCACG GGTGTCCGTGGGACGAGGCGAGCTGTTTGGCGGCGGCGATCGAGGGTGGT CACGAGGAAATCGCTAGCTGGATAAGGGAGAACCGATCGTAAACGTTCGG GCTTGCATCTTGCGTGTGTGTTTGTGGCCTTCAAAAACAGATGGTACTGC ACACGAGATTATTAGCATTTTGTCTGCAGATTTTAACTTTTCTCGCAAGG CAACTTCATACTCCCATAAAAGCCGGTGTTCGGGCGGACCGAGCGTGTTG CCTGTCTCTCTTGCTTTCTCCCGTCACGCGCCACAAGGGTTTGCTTCTGA GCTTTATTGACTCGTTCAAGCGGCGTGCCTGCTTGCCCTGTTGGTTGCAA CCACCCTGTAGCTTTTGTCCAAGTACTTCAAAGCCTGCGTTTTTTTGCCT GCTGGTTGCCAATCTTTCGCTGGGAGTTTTCAACGATTGCGTGGGTGGTA AGGATATCTGTTGTGGGTGCAGCAGGGTCTTGACGTTGAGATGCTTTCCG TCAGTGCTCGCCTTCACGGCACGGTTGGAGGTTGGGGATAAAACCTACGG GTGGATGCACCGACCACACAACTATTGGCTCTTCCTTTTTGTTTTCATGT AGTATGTTTTGCCCGTTTGGTACAGCTTTGCGTCGAGAACTTCCTCCGGG ATCGGAACGTTTGTCGCCCCCGGTGCAATTCAAGGCGCCACTTTC
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Coding sequence (CDS) from alignment at C-linearis_contig10:408903..412497-

>mRNA_C-linearis_contig10.449.1 ID=mRNA_C-linearis_contig10.449.1|Name=mRNA_C-linearis_contig10.449.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1908bp|location=Sequence derived from alignment at C-linearis_contig10:408903..412497- (Chordaria linearis ClinC8C monoicous)
ATGGGGCCACAGCAACAAGGAGCCGGAGACGGGTTAGCAGAGATGGGGCC
ACAGCAACAAGGAGCCGGAGACGGGTTAGCAGAGGGCACCGCCAGCTCAT
CCACCGATGGAGCACCAAGCGCCCCAACAGCAGTCGGCCTCGCCATCACC
AACACGGACGTTTTGAGCCACCTCCTAGACTTCGTGGCAGAGGACCAATA
TCTCTTCTTCGCCGCGGTCTCGCGAGCCTGGACGTCGGTGTGGAGGGCTG
CCCAACGCCCCGCGGCCACGAGGCAAGTCACGCCAGACACGTCCGAGTCT
CAGCTGCGAGAGAGTCTCGAGGCCGGCTTGCCTCTAGACAAGGCACAGCT
GTCGGCAGCCCTCGCACGCCACGGGCATCTAGAGCTGCTGCAGCTGGCCA
GGGAGCGCGGCTGCGCGTGGGGCGCGGTGACCTGTTCCGCCGCCGCCGGG
GCGGGACACCTGGAGCTCCTCCAGTGGTGCAAGTACAACGGGTGCCCATG
GGACGACCGCACGCTGACAGAGGCCGCGCGCGGCGACCACGCGGAGGTCC
TGGAGTGGGCGAGGATGTTCGGCTGCGAGGTGAGCATGGGCGTCCCCACC
GCGGCGGCGGGGGCGGGGAACCTGAACCTCCTCAAGTACTTGATCCAGGA
CGGGTTTCCGGTTTGTGCGGGGGCTTGCGGCGCGGCGGCTAAATCCGGCC
ACCTGGAAATCCTGGAGTACTTGGTCGAGAACGAGTGCCCTGTCGACGAG
ATGACGCTCTTTGGGGTCGTTCTCAACGGCCAGCTAGCTGTCGTGGAGTG
GGCGCTCGGGGAAGGGGTCGAGTTTAACGACCTCGGGGAGTACGCCTTCT
GCGACGCCGTGAAGAAGGGCCGATTGGCGGTGGTCCGTCTTCTGCATCGG
CACGGGTGTCCGTGGGACGAGGCGAGCTGTTTGGCGGCGGCGATCGAGGG
TGGTCACGAGGAAATCGCTAGCTGGATAAGGGAGAACCGATCGTAAGGCA
CCGCCAGCTCATCCACCGATGGAGCACCAAGCGCCCCAACAGCAGTCGGC
CTCGCCATCACCAACACGGACGTTTTGAGCCACCTCCTAGACTTCGTGGC
AGAGGACCAATATCTCTTCTTCGCCGCGGTCTCGCGAGCCTGGACGTCGG
TGTGGAGGGCTGCCCAACGCCCCGCGGCCACGAGGCAAGTCACGCCAGAC
ACGTCCGAGTCTCAGCTGCGAGAGAGTCTCGAGGCCGGCTTGCCTCTAGA
CAAGGCACAGCTGTCGGCAGCCCTCGCACGCCACGGGCATCTAGAGCTGC
TGCAGCTGGCCAGGGAGCGCGGCTGCGCGTGGGGCGCGGTGACCTGTTCC
GCCGCCGCCGGGGCGGGACACCTGGAGCTCCTCCAGTGGTGCAAGTACAA
CGGGTGCCCATGGGACGACCGCACGCTGACAGAGGCCGCGCGCGGCGACC
ACGCGGAGGTCCTGGAGTGGGCGAGGATGTTCGGCTGCGAGGTGAGCATG
GGCGTCCCCACCGCGGCGGCGGGGGCGGGGAACCTGAACCTCCTCAAGTA
CTTGATCCAGGACGGGTTTCCGGTTTGTGCGGGGGCTTGCGGCGCGGCGG
CTAAATCCGGCCACCTGGAAATCCTGGAGTACTTGGTCGAGAACGAGTGC
CCTGTCGACGAGATGACGCTCTTTGGGGTCGTTCTCAACGGCCAGCTAGC
TGTCGTGGAGTGGGCGCTCGGGGAAGGGGTCGAGTTTAACGACCTCGGGG
AGTACGCCTTCTGCGACGCCGTGAAGAAGGGCCGATTGGCGGTGGTCCGT
CTTCTGCATCGGCACGGGTGTCCGTGGGACGAGGCGAGCTGTTTGGCGGC
GGCGATCGAGGGTGGTCACGAGGAAATCGCTAGCTGGATAAGGGAGAACC
GATCGTAA
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