prot_C-linearis_contig10.445.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig10.445.1
Unique Nameprot_C-linearis_contig10.445.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length1206
Homology
[Close]
BLAST of mRNA_C-linearis_contig10.445.1 vs. uniprot
Match: A0A6H5KGC2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGC2_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 5.240e-20
Identity = 64/98 (65.31%), Postives = 74/98 (75.51%), Query Frame = 0 
Query:  814 TEMTGDQLLCALDMFLTPEQRRRKETIKKDQARKRKAIDAANKLLCDMAQRNAWGHSASRAATGPSADSSSGEGGDRTAKRPRSMASIFDQPARAPGA 911
            T MT DQLL A+DMFLT +QR+RKE IK+DQA+KRK IDAANKLL D AQR++W HSA   +     D +S EG DR AKRPRSMASIFD+P R  GA
Sbjct:  438 TAMTDDQLLSAVDMFLTTDQRKRKEAIKRDQAKKRKDIDAANKLLRDRAQRDSWAHSAGSFSP---VDLTSSEG-DRAAKRPRSMASIFDKPVRPTGA 531
[Close]
BLAST of mRNA_C-linearis_contig10.445.1 vs. uniprot
Match: D7FH97_ECTSI (Similar to chromosome fragility associated gene 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH97_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 2.500e-12
Identity = 43/58 (74.14%), Postives = 49/58 (84.48%), Query Frame = 0 
Query:  814 TEMTGDQLLCALDMFLTPEQRRRKETIKKDQARKRKAIDAANKLLCDMAQRNAWGHSA 871
            T MT DQLL A+DMFLT EQR+RKE IK+DQA+KRK IDAANKLL D AQR++W HSA
Sbjct:  687 TAMTDDQLLSAVDMFLTTEQRKRKEAIKRDQAKKRKDIDAANKLLSDRAQRDSWAHSA 744
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.445.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KGC2_9PHAE5.240e-2065.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FH97_ECTSI2.500e-1274.14Similar to chromosome fragility associated gene 1 ... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 519..539

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:352611..360531 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.445.1mRNA_C-linearis_contig10.445.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig10 352504..360818 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig10.445.1 ID=prot_C-linearis_contig10.445.1|Name=mRNA_C-linearis_contig10.445.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=1206bp
MARSDEVKPGTATLGLSGGKLCFVRPASASSESPSTSASPAAAGPRRTAP
GAPAPTGSGSGAAPLRPNNGQDTVAATTAAASAAAAANKGKKGKKGKKGK
KPTAGGPRKKSKLHLPSFTPKAKVGDVGGAGGDGRGTQAPRASPSDTVVG
AAAVTAKAKTKSPKPTAGRAPKKAASAAAGSKLSVWQGCGFTGVSRADRA
ADGDANSIAAAAAAAAAAAAAADADADAAVDDADVTALQETADGLTSAKS
LASRAIGSRGGGTGGTSPPVVDLSVGCTGGDGGQRGEDIAATSDAFQGPN
DRTKGQGIDGDGEGGVAELGSAATPAAAEVAETSPPLSGGVHELATAARA
EQPLGAGPSEGDVDAVSGANRTTPAASEITAPAAAAAAAAAAAAPMGNET
SAPATAATTPAVVVLEPGTSEATPAAPSNGDAPPPPPPPPSGDDDCAPAA
ASATAQDHACVPDTVGSGVDARADGTASDGGSSAGSSPAASSRQVRPTMT
ATAGRVSKRVAAKAEEQAKAAAAADAEAARAAAAALEAKEGRRNKRRKQT
TPPSANATANAAAAPTRKNKAPGATTSSTTRVTGGTGAVGGPAKSEGLGL
TGGIKTRVIEGTLSPAPGPAAAATKPARIASIFLPRSSGGGSGSGGGSGS
GTSGSASSAPASAAPKLAPLFMPKKKAGAGGASGGGSGGGGGGGGGDGDG
DYSGQKKKQRKDAPPPPSRVEVMDVDDDDSDSSNATVARTGGRRGGNRRQ
QGGPSGGGGKGGAGGEGGRGDTVDLAGDDEDDGGGAWEVAAAVAVAAETA
GRKGRGPRGITPRTEMTGDQLLCALDMFLTPEQRRRKETIKKDQARKRKA
IDAANKLLCDMAQRNAWGHSASRAATGPSADSSSGEGGDRTAKRPRSMAS
IFDQPARAPGAGTAAAAALARRREESGCGRWKVTPAPLPVCRHHRHHAER
REGEATIPVGDGDGDGDGEGGEDEATSPPPDDGCAGMSAAAALEFSPSLP
PKSSSLSCPEGQAVVVGGGLSSASAGACGGGRDGGGGDGGGCAACAEVEE
DLRSLLSLPGVVSGRDGDGDGDGNGDDDGDATMSSGATGPPPLAPMLMVP
SPEAGGAPAAPAAAATPSESEAADWSRAATTGTSAPASPALARSTTPARA
ARGRGRPRRPRRRRRQSHPPQGSLVRAPPPTAMTGQPPPPEIRSPLPRPD
FSPPP*
back to top