mRNA_C-linearis_contig10.445.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig10.445.1 vs. uniprot
Match: A0A6H5KGC2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGC2_9PHAE) HSP 1 Score: 108 bits (269), Expect = 6.160e-20 Identity = 64/98 (65.31%), Postives = 74/98 (75.51%), Query Frame = 3 Query: 2547 TEMTGDQLLCALDMFLTPEQRRRKETIKKDQARKRKAIDAANKLLCDMAQRNAWGHSASRAATGPSADSSSGEGGDRTAKRPRSMASIFDQPARAPGA 2840
T MT DQLL A+DMFLT +QR+RKE IK+DQA+KRK IDAANKLL D AQR++W HSA + D +S EG DR AKRPRSMASIFD+P R GA
Sbjct: 438 TAMTDDQLLSAVDMFLTTDQRKRKEAIKRDQAKKRKDIDAANKLLRDRAQRDSWAHSAGSFSP---VDLTSSEG-DRAAKRPRSMASIFDKPVRPTGA 531
BLAST of mRNA_C-linearis_contig10.445.1 vs. uniprot
Match: D7FH97_ECTSI (Similar to chromosome fragility associated gene 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH97_ECTSI) HSP 1 Score: 83.6 bits (205), Expect = 2.880e-12 Identity = 43/58 (74.14%), Postives = 49/58 (84.48%), Query Frame = 3 Query: 2547 TEMTGDQLLCALDMFLTPEQRRRKETIKKDQARKRKAIDAANKLLCDMAQRNAWGHSA 2720
T MT DQLL A+DMFLT EQR+RKE IK+DQA+KRK IDAANKLL D AQR++W HSA
Sbjct: 687 TAMTDDQLLSAVDMFLTTEQRKRKEAIKRDQAKKRKDIDAANKLLSDRAQRDSWAHSA 744 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.445.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.445.1 >prot_C-linearis_contig10.445.1 ID=prot_C-linearis_contig10.445.1|Name=mRNA_C-linearis_contig10.445.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=1206bp MARSDEVKPGTATLGLSGGKLCFVRPASASSESPSTSASPAAAGPRRTAPback to top mRNA from alignment at C-linearis_contig10:352504..360818+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.445.1 ID=mRNA_C-linearis_contig10.445.1|Name=mRNA_C-linearis_contig10.445.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=8315bp|location=Sequence derived from alignment at C-linearis_contig10:352504..360818+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:352504..360818+ >mRNA_C-linearis_contig10.445.1 ID=mRNA_C-linearis_contig10.445.1|Name=mRNA_C-linearis_contig10.445.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=7236bp|location=Sequence derived from alignment at C-linearis_contig10:352504..360818+ (Chordaria linearis ClinC8C monoicous)back to top |