prot_C-linearis_contig1.119.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig1.119.1
Unique Nameprot_C-linearis_contig1.119.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length468
Homology
BLAST of mRNA_C-linearis_contig1.119.1 vs. uniprot
Match: D7FIZ6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIZ6_ECTSI)

HSP 1 Score: 565 bits (1457), Expect = 7.340e-198
Identity = 311/456 (68.20%), Postives = 358/456 (78.51%), Query Frame = 0
Query:   27 LPAAAVSST--NPWFAQNWGLVVTAAATLITVALSLGVSNCSKSTFMGTSAAHTGNQSLFASLKSRGGISIVQRK--------GRVLQENEAVVTTPIVQYETNLQVYMCNPSLVEVGNDAHLVDETRLASALGKINGLRQADADEITVAIKTGPTDADDNTYLCDTYGMLQWHAQIPYTAADATASDTTPAVMAAQATDYVSYSATEFKTSLTANINDQYAGEAGTVELSAADIVVPNVGWIVTFPAEETVAQETNTARSSDGLAMGLGSDNGLWVWWVWLIYALLVACCLVPLCXXXXXXXXXDKNAAREYLDATRKGRGEEGLAKIRGPEWGITELDFEGDHHAYQNQEMKREYDGAGRGVEPTAYKTSHTAGQQSVSAQAWMQEAGKKSAWGPQPSGSSREIG--QDPVVRRFDIDDEDTDDGIGQLRSRHPQYSFDVGRGGFN---GESKS 467
            +PAA  SS+  NPW A+NWGLV+ AAAT+ TVA SLG +  +  +   T +A  G QSL+AS KSRGGIS+ Q +        GRVLQE    V TPIV+Y T LQ++MCNPSL   GNDAHLVDE  LA+AL  I+G++QAD  +ITV IKT P D DD +Y+CDT GMLQWHAQ+ Y+AA A + DTTPAV+AAQA DYV+YS+++FK  L   IN +YAGE  TVELSA DI++P VGWIVTFPAEE+V QET+TA SSDGLAMG+GSD+ LW WWVWLIYALLVAC      XXXXXXX  +K AAR+ L ATRKGRGEEGLAKIRGPEWGITELDFEGD+ AYQ+QEMKREYDGAGRGVEPTAY+ SH AGQQSVSAQAWMQEAGKKSAW  QPSG+S   G  Q PVVRRFDIDD+D DDG+G+LRS+HPQYSFDVGRGGFN   GESKS
Sbjct:    1 MPAARASSSSLNPWVARNWGLVIAAAATVATVAFSLGTTASTSRSGAMTGSARVGQQSLYASPKSRGGISVAQAQRPSSVRPHGRVLQEETPTVITPIVEYGTKLQIFMCNPSLEVEGNDAHLVDEASLAAALSNISGIKQADEGDITVTIKTEPVDVDDVSYMCDTDGMLQWHAQVEYSAAYAGSRDTTPAVLAAQANDYVAYSSSQFKALLAGFINAEYAGEVETVELSADDILIPTVGWIVTFPAEESVTQETHTAGSSDGLAMGIGSDSSLWAWWVWLIYALLVACXXXXXXXXXXXXXADEKEAARDRLIATRKGRGEEGLAKIRGPEWGITELDFEGDYDAYQSQEMKREYDGAGRGVEPTAYRPSHRAGQQSVSAQAWMQEAGKKSAWA-QPSGNSSRQGGGQSPVVRRFDIDDDDADDGVGKLRSKHPQYSFDVGRGGFNDRDGESKS 455          
BLAST of mRNA_C-linearis_contig1.119.1 vs. uniprot
Match: A0A835YQ53_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ53_9STRA)

HSP 1 Score: 104 bits (260), Expect = 1.370e-20
Identity = 98/335 (29.25%), Postives = 149/335 (44.48%), Query Frame = 0
Query:  112 TPIVQYETNLQVYMCNPSLVEVGNDAHLVDETRLASALGKINGLRQADADEITVAIKTGPTDADDNTYLCDTYGMLQWHAQIPY----------TAADATASDTT-----------PAVMAAQATDYVSYS-----ATEFKTSLTANINDQYAGEAGTVELSAADIVVPNVGWIVTFPAEETVAQETNTARSSDGLAMGLG-SDNGLWVWWVWLIYALLVACCLVPLCXXXXXXXXXDKNAAREYLDATR-----KGRGEEGLAKIRGPEWGITELDFEGDHHAYQNQEMKREYDGAGRGVEPTA---YKTSHTAGQQSV--SAQAWMQEAGKKS 409
            TPI  YE    +++C        ++   V E+ +  A+  ++   +   D ++V   T         Y C   G  QW   + Y          TA   TA++TT               A++A D+V+YS       +F+T+  A +       AG +  S  D+ V + GWI  F + E      + A S+  + M +G + N +W  W W+++AL V  C +PLC          K  A E+ +        K R EEGL KI G E+GIT LDF+G+++ Y+  +M+ EY GA       A   +K   +AG  +V  SA AW  E GKKS
Sbjct:  113 TPI-SYEAQFNMFICPTQAGVANSNVKAVTESHVRDAVLSLDAFGKPSLDAVSVGFTTYRA-----PYKCAIAGSTQWSVSVVYRDPSYYRRHLTAVATTATNTTLSAGYVDPSSNAVTRASEANDWVTYSFPNNSTADFRTAFYAAVAAAAGLPAGAITYS--DLQVQSSGWIARFSSSEGSVPPGSLAFSTPTM-MSVGIAGNEVWPAWAWVLFALAVLACALPLCMFIL------KKRAAEFEEEEEGYGLLKLRKEEGLEKIHGNEFGITNLDFDGNYNDYEEPKMQDEYAGATAAAASRASHGHKRMDSAGTSTVDVSATAWSNEKGKKS 432          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig1.119.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FIZ6_ECTSI7.340e-19868.20Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YQ53_9STRA1.370e-2029.25Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 63..291
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..42
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 316..467
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 43..62
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 292..315
NoneNo IPR availableTMHMMTMhelixcoord: 43..62
NoneNo IPR availableTMHMMTMhelixcoord: 293..315

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig1contigC-linearis_contig1:1718469..1721208 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig1.119.1mRNA_C-linearis_contig1.119.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig1 1718414..1721445 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig1.119.1 ID=prot_C-linearis_contig1.119.1|Name=mRNA_C-linearis_contig1.119.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=468bp
MDRDELSRTRRGSRRGSAVTARLVRTLPAAAVSSTNPWFAQNWGLVVTAA
ATLITVALSLGVSNCSKSTFMGTSAAHTGNQSLFASLKSRGGISIVQRKG
RVLQENEAVVTTPIVQYETNLQVYMCNPSLVEVGNDAHLVDETRLASALG
KINGLRQADADEITVAIKTGPTDADDNTYLCDTYGMLQWHAQIPYTAADA
TASDTTPAVMAAQATDYVSYSATEFKTSLTANINDQYAGEAGTVELSAAD
IVVPNVGWIVTFPAEETVAQETNTARSSDGLAMGLGSDNGLWVWWVWLIY
ALLVACCLVPLCCFLRRRREDDKNAAREYLDATRKGRGEEGLAKIRGPEW
GITELDFEGDHHAYQNQEMKREYDGAGRGVEPTAYKTSHTAGQQSVSAQA
WMQEAGKKSAWGPQPSGSSREIGQDPVVRRFDIDDEDTDDGIGQLRSRHP
QYSFDVGRGGFNGESKS*
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