mRNA_C-linearis_contig99.17197.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig99.17197.1
Unique NamemRNA_C-linearis_contig99.17197.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig99.17197.1 vs. uniprot
Match: D7G411_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G411_ECTSI)

HSP 1 Score: 408 bits (1048), Expect = 1.620e-118
Identity = 205/249 (82.33%), Postives = 225/249 (90.36%), Query Frame = 2 
Query:  134 IDGGGGAVARLLGMPMGFRNTIREVQGTIGTVLDTVEAVKNLLNWTHPPKTLMVYALVALVWVVLLVVPGRYIVLTLGLLEFSKAWL-GAKEPGADEVISDYSAPARPPPPLATKLENLLMSLPVDSELAACYAWEAREHSKKAKASLKLREQRARLKLLGAGWQWEGALRVRDRAGDPWESRYVLLLGHRLAWWGSAKELDDGRKARGQLLLQGHAGITHLSPLEAREVIDPRKVVCVFGRSPDGLPH 877
            + GGGGAVARLLGMPMGFRNTIR+VQ TIGTVLDTVEAVKNLLNWTHPPKTL+VYA+VAL W+VLLVVPGRYIVLTLGLLEFSKAW+ G +EP   E+++D    A  P  LA KL NLL+SLPVDSELAACYAWEAREHS+K KA LKLREQRARLKLLGAG QWEG +RVRDRAGDPWE RY+++LGHRLAWWGS+KELDDG+KARGQLLLQGHAG+THLSPLEARE+ DPRKVVCVFGRSPDGLPH
Sbjct: 1738 VAGGGGAVARLLGMPMGFRNTIRDVQDTIGTVLDTVEAVKNLLNWTHPPKTLLVYAIVALAWLVLLVVPGRYIVLTLGLLEFSKAWMTGGQEP---ELVADGGGGA--PSHLAIKLRNLLLSLPVDSELAACYAWEAREHSRKEKAGLKLREQRARLKLLGAGRQWEGEMRVRDRAGDPWEPRYLVVLGHRLAWWGSSKELDDGKKARGQLLLQGHAGVTHLSPLEARELTDPRKVVCVFGRSPDGLPH 1981
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BLAST of mRNA_C-linearis_contig99.17197.1 vs. uniprot
Match: A0A6H5L011_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L011_9PHAE)

HSP 1 Score: 402 bits (1033), Expect = 2.130e-116
Identity = 202/243 (83.13%), Postives = 220/243 (90.53%), Query Frame = 2 
Query:  152 AVARLLGMPMGFRNTIREVQGTIGTVLDTVEAVKNLLNWTHPPKTLMVYALVALVWVVLLVVPGRYIVLTLGLLEFSKAWL-GAKEPGADEVISDYSAPARPPPPLATKLENLLMSLPVDSELAACYAWEAREHSKKAKASLKLREQRARLKLLGAGWQWEGALRVRDRAGDPWESRYVLLLGHRLAWWGSAKELDDGRKARGQLLLQGHAGITHLSPLEAREVIDPRKVVCVFGRSPDGLPH 877
            AVARLLGMPMGFRNTIR+VQ TIGTVLDTVEAVKNLLNWTHPPKTL+VY +VAL W+VLLVVPGRYIVLTLGLLEFSKAW+ G +EP   E+++D       P PLA KL NLL+SLPVDSELAACYAWEAREHS+K KA LKLREQRARLKLLGAG QWEG +RVRDRAGDPWESRYV++LGHRLAWWGS+KELDDG+KARGQLLLQGHAG+THLSPLEARE+ DPRKVVCVFGRSPDGLPH
Sbjct: 1881 AVARLLGMPMGFRNTIRDVQDTIGTVLDTVEAVKNLLNWTHPPKTLLVYTVVALAWLVLLVVPGRYIVLTLGLLEFSKAWMTGGQEP---ELVADDGGGT--PSPLAIKLRNLLLSLPVDSELAACYAWEAREHSRKEKAGLKLREQRARLKLLGAGRQWEGGMRVRDRAGDPWESRYVVVLGHRLAWWGSSKELDDGKKARGQLLLQGHAGVTHLSPLEARELNDPRKVVCVFGRSPDGLPH 2118
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BLAST of mRNA_C-linearis_contig99.17197.1 vs. uniprot
Match: A0A7S3H4K2_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H4K2_9STRA)

HSP 1 Score: 135 bits (340), Expect = 7.180e-31
Identity = 79/238 (33.19%), Postives = 128/238 (53.78%), Query Frame = 2 
Query:  191 NTIREVQGTIGTVLDTVEAVKNLLNWTHPPKTLMVYALVALVWVVLLVVPGRYIVLTLGLLEFSKAWLGAKEPGADEVISDYSAPARPPPPLATKLENLLMSLPVDSELAACYAWEAREHSKKAKASLKLREQRARLKLLGAGWQWEGALRVRDRA---------GDPWESRYVLLLGHRLAWWGSAKELDDGRKARGQLLLQGHAGITHLSPLEAREVIDPRKVVCVFGRSPDGLPH 877
            + ++ VQ  +  +LD +E++KNLLNWT P KT  +Y  +  VW+V ++VPGR IVL +GL EF   ++   E G + +I               +  NL+ S+P D +LA  Y  E + ++   +A  K  E+  +L+L+     W G + ++  +         G+ W   ++LL G RL WW S + LD G+ A GQLLL GH+G+  +SP++ R+     +++ VFG+   G P 
Sbjct:  116 DNVKYVQNMMSGLLDQIESLKNLLNWTSPSKTFPLYVALVAVWLVTILVPGRLIVLAIGLYEFFFVFMPIPE-GRNTMI---------------RFGNLVQSIPNDDDLAQIYGTEKKAYAASKQAEWKHTEKSRKLQLV-LDSPWHGLVSIKGSSSSSGHLAGSGEEWVEVFLLLQGRRLVWWVSEEALDQGKMAAGQLLLCGHSGLAQVSPMDIRKFGGDSRLIAVFGQDYVGRPQ 336
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BLAST of mRNA_C-linearis_contig99.17197.1 vs. uniprot
Match: A0A4D9CW43_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CW43_9STRA)

HSP 1 Score: 137 bits (344), Expect = 2.960e-29
Identity = 84/232 (36.21%), Postives = 127/232 (54.74%), Query Frame = 2 
Query:  185 FRNTIREVQGTIGTVLDTVEAVKNLLNWTHPPKTLMVYALVALVWVVLLVVPGRYIVLTLGLLEFSKAWLGAKEPGADEVISDYSAPARPPPPLATKLENLLMSLPVDSELAACYAWEAREHSKKAKASLKLREQRARLKLLGAGWQ--WEGALRVRDRAGD-PWESRYVLLLGHRLAWWGSAKELDDG--RKARGQLLLQGHAGITHLSPLEAREVIDPRK--VVCVFGRS 859
             R+T++  Q  +   L   E+ KNLLNWTHP KTL +YA +  +W++ L++P RY++L  GL EF+      +E        +Y        P   + ENLL S+P D +L   Y  E +   +K +   +++ Q+AR   L   W   WEG ++ R    + PW   Y  + G+R+ WW + K+LD G  R   GQ++L+GHAG+T  SPLE RE+   R   +VC+FGR+
Sbjct:  713 LRSTVKHFQNLLDGYLSYAESWKNLLNWTHPQKTLAIYAALWALWLICLLLPTRYLILVAGLYEFTFRLFPEQE--------EY--------PNVIRAENLLASIPNDDDLRRVYYQENQNFLRKKRE--RVQNQKARRAHLSGVWGFLWEGNVQTRAAGSNQPWRQAYAAVQGNRILWWKTEKDLDRGGIRVPEGQIILRGHAGLTSPSPLEVRELGPARASLLVCMFGRN 926
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BLAST of mRNA_C-linearis_contig99.17197.1 vs. uniprot
Match: A0A7S2KPX7_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KPX7_9STRA)

HSP 1 Score: 134 bits (338), Expect = 1.730e-28
Identity = 87/255 (34.12%), Postives = 138/255 (54.12%), Query Frame = 2 
Query:  164 LLGMPMGFRNTIREV-------QGTIGTVLDTVEAVKNLLNWTHPPKTLMVYALVALVWVVLLVVPGRYIVLTLGLLEF------SKAWLGAKEPGADE----VISDYSAPARPPPPLATKLENLLMSLPVDSELAACYAWEAREHSKKAKASLKLREQRARLKLLG-AGWQWEGALRVR-DRAGDPWESR--YVLLLGHRLAWWGSAKELDDGRKARGQLLLQGHAGITHLSPLEAREVIDPR--KVVCVFGRS 859
            ++G  +   NT+R +       Q T+G +LD VE+ +NL  W  P K+++V++ +++VW+VL ++P R+I+L+ GL EF      +   + + E G +        + S   +P  P+ T   NL+ ++P D +L   Y WEAR      +  L   ++ +RLK L  A W  E  L+V  + AG  WE R  + +L GHRL WW S+ + D G K  GQ+L  GHAG+  LSPL+ R++      + + VFGR 
Sbjct:  752 MIGSSINTINTVRGMGGNAQWLQNTLGNLLDFVESFRNLFTWACPQKSMLVFSALSMVWIVLCIIPTRFIILSAGLYEFVGKHIMTAFSVDSSEDGNESDXXXXXXENSIDNQPSIPILTHFYNLVAAVPNDEDLRRAYFWEARRMGGVERDDLAQSKRISRLKSLWRARWYGELYLKVSANAAGTGWEWRNIFTILQGHRLVWWVSSHDFDRGNKPLGQILFAGHAGLAGLSPLDLRQMQKNEFSRAISVFGRG 1006
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BLAST of mRNA_C-linearis_contig99.17197.1 vs. uniprot
Match: W7TX45_9STRA (Protein c kinase isoform a n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TX45_9STRA)

HSP 1 Score: 134 bits (336), Expect = 4.100e-28
Identity = 80/226 (35.40%), Postives = 122/226 (53.98%), Query Frame = 2 
Query:  185 FRNTIREVQGTIGTVLDTVEAVKNLLNWTHPPKTLMVYALVALVWVVLLVVPGRYIVLTLGLLEFSKAWLGAKEPGADEVISDYSAPARPPPPLATKLENLLMSLPVDSELAACYAWEAREHSKKAKASLKLREQRARLKLLGAGWQ--WEGALRVRDRAGD-PWESRYVLLLGHRLAWWGSAKELDDG--RKARGQLLLQGHAGITHLSPLEAREVIDPRKVVCV 847
             R+T++  Q  +   L   E+ KNLLNWTHP KTL +YA +  +W++ L++P RY++L  GL EF+      +E        +Y        P   + ENLL S+P D +L   Y  E +   +K +   +++ Q+AR   L   W   WEG ++ R    + PW   Y  + G+R+ WW + K+LD G  R   GQ++L+GHAG+T  SPLE RE +    V+C+
Sbjct: 1262 LRSTVKHFQNLLDGYLSYAESWKNLLNWTHPQKTLAIYAALWALWLICLLLPTRYLILVAGLYEFTFRLFPEQE--------EY--------PNVIRAENLLASIPNDDDLRRVYYQENQNFLRKKRE--RVQNQKARRAHLSGVWGFLWEGNVQTRAAGSNQPWRQAYAAVQGNRILWWKTEKDLDRGGIRVPEGQIILRGHAGLTSPSPLEVREAVREDWVICI 1469
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BLAST of mRNA_C-linearis_contig99.17197.1 vs. uniprot
Match: A0A448Z8C7_9STRA (Phorbol-ester/DAG-type domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z8C7_9STRA)

HSP 1 Score: 130 bits (327), Expect = 4.840e-27
Identity = 83/277 (29.96%), Postives = 144/277 (51.99%), Query Frame = 2 
Query:  134 IDGGGGAVARLLGMPMGFRNTIREVQGTIGTVLDTVEAVKNLLNWTHPPKTLMVYALVALVWVVLLVVPGRYIVLTLGLLEFSKAW----------LGAKEPGADEVISDYSAPARPPP------PLATKLENLLMSLPVDSELAACYAWEARE--HSKKAKASLKLREQRARLKLLGAGWQWEGALRVRDRAGD-------PWESRYVLLLGHRLAWWGSAKELDDGRKARGQLLLQGHAGITHLSPLEAREVIDPRKV---VCVFGRSPDGLPHI 880
            +D   G+V++  G+      TI+ VQ T+G+++D VE V NLLN+T P K+  ++    LVWVV  ++P RY++L+ GL+++  ++          +G K P    +  ++   +          P A K+ N + S+P + +L   Y WE+R+   +K  K +++ RE R + KL  A W     + V+D   D        W+S + ++ GHR  WW S  + DDG    G++++ GHAG+   SP+E R++   +++   + +FGR   G   I
Sbjct: 1181 VDSSIGSVSKAFGIG----GTIQVVQNTLGSIIDLVEGVMNLLNFTDPYKSSTIFVGSFLVWVVFCIIPTRYLILSAGLVQYGVSFVDRYGKALGIIGGKTPVESTLQIEHDKSSNEEDKNGKGSPFAIKVANAIRSIPTNEDLRKAYFWESRQLGTAKAKKYTVEKRESRLK-KLWKAKWHSTMKILVQDNEMDNNQQPVFQWDSGFAVVQGHRFIWWKSVNDFDDGELPSGKVIMSGHAGLGGPSPIEMRKLDKEKELPLCLTIFGRGSGGQERI 1452
[Close]
BLAST of mRNA_C-linearis_contig99.17197.1 vs. uniprot
Match: A0A7S4AIS0_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AIS0_9STRA)

HSP 1 Score: 129 bits (323), Expect = 1.440e-26
Identity = 85/278 (30.58%), Postives = 145/278 (52.16%), Query Frame = 2 
Query:  134 IDGGGGAVARLLGMPMGFRNTIREVQGTIGTVLDTVEAVKNLLNWTHPPKTLMVYALVALVWVVLLVVPGRYIVLTLGLLEFS--------KAWLG--AKEPGADEVIS-------DYSAPARPPPPLATKLENLLMSLPVDSELAACYAWEAREHSKKAKASLKLREQRARLKLLGAGWQWEGALRV------RDRAGDP---WESRYVLLLGHRLAWWGSAKELDDGRKARGQLLLQGHAGITHLSPLEAREV-IDPRKVVC--VFGRSPDGLPHI 880
            +D   G+V++  G+      TI+ VQ T+ +++D +EAV N+LN+T P K+ MV+    LVWV+  ++P RY++L  GL ++         K  LG  +K+  A+  I        +     R   P   K+ N + S+P + +L   Y WE+R+   +      + ++ +RLK L    +W  ++++      RD++  P   WES + ++ GHR  WW SA E DDG    G+++L GHAG+   SP+E +++ ++    +C  VFG+   G   I
Sbjct: 1164 VDSSIGSVSKAFGIG----GTIQVVQNTLASIIDRIEAVINILNFTDPYKSSMVFVGSFLVWVLFCIIPTRYLILFAGLAQYGITFVDKYVKKLLGIKSKKKSAESAIEIDQNGGLELDDKERKASPFGIKITNAVRSIPTNEDLRKTYFWESRQLGTEKAKKYAVEKRESRLKKLWKA-KWHSSMKILVQDSERDQSQQPMFHWESGFAVVQGHRFIWWTSADEFDDGELPNGKVILSGHAGLGGPSPIEMKKLDMEKELPLCLTVFGKGFAGQERI 1436
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BLAST of mRNA_C-linearis_contig99.17197.1 vs. uniprot
Match: A0A7R9ZTF2_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZTF2_9STRA)

HSP 1 Score: 120 bits (301), Expect = 1.600e-24
Identity = 79/261 (30.27%), Postives = 131/261 (50.19%), Query Frame = 2 
Query:  179 MGFRNTIREVQGTIGTVLDTVEAVKNLLNWTHPPKTLMVYALVALVWVVLLVVPGRYIVLTLGLLEFSKAWLGA--------KEPGADEVISDYSAPA------RPPPP-LATKLENLLMSLPVDSELAACYAWEAREHSKKAKASLKLREQRARLKLLGAGWQ--WEGALRVRDR--------------AGD-PWESRYVLLLGHRLAWWGSAKELDDGRKARGQLLLQGHAGITHLSPLEAREVI--DPRKVVCVFGRS 859
            M   +T++ +Q  +  +L+ ++ ++NL N+T P K+ +V+A   L+WV+L+ VP RY++L +G+ +F   +           K+ GA    +  S         +P PP +   L N + +LP + +L   Y W++R  S +        ++ +RL+ L   WQ  W G  R+R+               A D  W   +V+L GHRL WW  A+  D G    G L L GH+G+T+ SPLE R +   D  ++VC+FG+ 
Sbjct:  316 MSVGDTLQTIQNVLCAILNAIDVLRNLFNFTDPFKSSIVFASTFLIWVLLICVPSRYLILAIGMSQFVAGFFARRQGSKKRRKKSGAKNKANKASGTMHRHVGDKPRPPFIVVWLRNFIRTLPTNEDLRKTYFWQSRLASARFMEEHAFAKRTSRLQKL---WQATWYGQARLRENSLANAAMKTGAVSPASDMAWLDVFVVLQGHRLLWWSDARSFDVGDTPVGSLFLAGHSGLTNPSPLELRRIPKEDLDRIVCIFGKG 573
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BLAST of mRNA_C-linearis_contig99.17197.1 vs. uniprot
Match: F0Y808_AURAN (Phorbol-ester/DAG-type domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y808_AURAN)

HSP 1 Score: 118 bits (295), Expect = 2.780e-23
Identity = 75/226 (33.19%), Postives = 120/226 (53.10%), Query Frame = 2 
Query:  209 QGTIGTVLDTVEAVKNLLNWTHPPKTLMVYALVALVWVVLLVVPGRYIVLTLGLLEFSKAWLGAKEPGADEVISDYSAPARPPPPLATKLENLLMSLPVDSELAACYAWEAREHSKKAKASLKLREQRARLKLLGAGWQ--WEGALRVRDRAGDPWESRYVLLLGHRLAWWGSAKELDDGRKARGQLLLQGHAGITHLSPLEAREVIDPRK--VVCVFGRSPDGLP 874
            Q  +G  LD +E++KNL+NWTHP KT +++  V +  V+   +  R++ L  GL EF+   L    P +   ++              +  N L ++P D +L ACY   A  H+ +   S + R +RARL  +   W   WEG + +R  A   ++ R ++L G RL  W S +++D GR    QLLLQGH+G+T  +P +   + D R+  ++ VFG++ DG P
Sbjct:  971 QNALGRYLDVMESMKNLVNWTHPEKTGLIFVGVLVGAVLFCRIKTRWLTLAFGLYEFTYRLL----PSSASTVT-------------CRFLNALKAVPNDRDLRACYGHRAALHAGRLVDSERRRRRRARLHAI---WDCGWEGGVELRPDASSAFDRRRLVLHGRRLLAWRSERDVDAGRPPAAQLLLQGHSGLTAPAPTDGAGLPDDRRAHMLAVFGQASDGAP 1176
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig99.17197.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D7G411_ECTSI1.620e-11882.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L011_9PHAE2.130e-11683.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3H4K2_9STRA7.180e-3133.19Hypothetical protein n=2 Tax=Spumella elongata Tax... [more]
A0A4D9CW43_9STRA2.960e-2936.21Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S2KPX7_9STRA1.730e-2834.12Hypothetical protein n=2 Tax=Leptocylindrus danicu... [more]
W7TX45_9STRA4.100e-2835.40Protein c kinase isoform a n=2 Tax=Nannochloropsis... [more]
A0A448Z8C7_9STRA4.840e-2729.96Phorbol-ester/DAG-type domain-containing protein n... [more]
A0A7S4AIS0_9STRA1.440e-2630.58Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A7R9ZTF2_9STRA1.600e-2430.27Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
F0Y808_AURAN2.780e-2333.19Phorbol-ester/DAG-type domain-containing protein n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig99contigC-linearis_contig99:612827..617910 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score387.9
Seed ortholog evalue3.9e-105
Seed eggNOG ortholog2880.D7G411
KEGG koko:K10360,ko:K19839,ko:K20644
KEGG Pathwayko04011,map04011
Hectar predicted targeting categorysignal anchor
GOsGO:0001709,GO:0003674,GO:0005096,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0005938,GO:0006996,GO:0007010,GO:0008047,GO:0008104,GO:0008150,GO:0009987,GO:0015630,GO:0016043,GO:0030029,GO:0030036,GO:0030154,GO:0030234,GO:0030695,GO:0030865,GO:0030866,GO:0032502,GO:0032970,GO:0033036,GO:0043085,GO:0043087,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043547,GO:0044093,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0045165,GO:0045167,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0051179,GO:0051336,GO:0051345,GO:0060589,GO:0065007,GO:0065009,GO:0071840,GO:0071944,GO:0098772,GO:0099568
EggNOG free text desc.GTPase activator activity
EggNOG OGsKOG1453@1,KOG1453@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131,ko04812
Exons7
Model size2696
Cds size804
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930857.317685-UTR-C-linearis_contig99:612826..6129981622930857.317685-UTR-C-linearis_contig99:612826..612998Chordaria linearis ClinC8C monoicousUTRC-linearis_contig99 612827..612998 +
1690881285.3393857-UTR-C-linearis_contig99:612826..6129981690881285.3393857-UTR-C-linearis_contig99:612826..612998Chordaria linearis ClinC8C monoicousUTRC-linearis_contig99 612827..612998 +
1622930857.4325104-UTR-C-linearis_contig99:615580..6170211622930857.4325104-UTR-C-linearis_contig99:615580..617021Chordaria linearis ClinC8C monoicousUTRC-linearis_contig99 615581..617021 +
1690881285.422539-UTR-C-linearis_contig99:615580..6170211690881285.422539-UTR-C-linearis_contig99:615580..617021Chordaria linearis ClinC8C monoicousUTRC-linearis_contig99 615581..617021 +
1622930857.4491687-UTR-C-linearis_contig99:617631..6179101622930857.4491687-UTR-C-linearis_contig99:617631..617910Chordaria linearis ClinC8C monoicousUTRC-linearis_contig99 617632..617910 +
1690881285.4330964-UTR-C-linearis_contig99:617631..6179101690881285.4330964-UTR-C-linearis_contig99:617631..617910Chordaria linearis ClinC8C monoicousUTRC-linearis_contig99 617632..617910 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930857.3327327-CDS-C-linearis_contig99:612998..6130701622930857.3327327-CDS-C-linearis_contig99:612998..613070Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 612999..613070 +
1690881285.3593597-CDS-C-linearis_contig99:612998..6130701690881285.3593597-CDS-C-linearis_contig99:612998..613070Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 612999..613070 +
1622930857.3455853-CDS-C-linearis_contig99:613633..6138841622930857.3455853-CDS-C-linearis_contig99:613633..613884Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 613634..613884 +
1690881285.3714886-CDS-C-linearis_contig99:613633..6138841690881285.3714886-CDS-C-linearis_contig99:613633..613884Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 613634..613884 +
1622930857.359598-CDS-C-linearis_contig99:614120..6143031622930857.359598-CDS-C-linearis_contig99:614120..614303Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 614121..614303 +
1690881285.3812652-CDS-C-linearis_contig99:614120..6143031690881285.3812652-CDS-C-linearis_contig99:614120..614303Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 614121..614303 +
1622930857.3765528-CDS-C-linearis_contig99:614714..6148081622930857.3765528-CDS-C-linearis_contig99:614714..614808Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 614715..614808 +
1690881285.39153-CDS-C-linearis_contig99:614714..6148081690881285.39153-CDS-C-linearis_contig99:614714..614808Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 614715..614808 +
1622930857.3972518-CDS-C-linearis_contig99:615320..6154261622930857.3972518-CDS-C-linearis_contig99:615320..615426Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 615321..615426 +
1690881285.4018672-CDS-C-linearis_contig99:615320..6154261690881285.4018672-CDS-C-linearis_contig99:615320..615426Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 615321..615426 +
1622930857.415681-CDS-C-linearis_contig99:615482..6155801622930857.415681-CDS-C-linearis_contig99:615482..615580Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 615483..615580 +
1690881285.4134974-CDS-C-linearis_contig99:615482..6155801690881285.4134974-CDS-C-linearis_contig99:615482..615580Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 615483..615580 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig99.17197.1prot_C-linearis_contig99.17197.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig99 612999..615580 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig99.17197.1

>prot_C-linearis_contig99.17197.1 ID=prot_C-linearis_contig99.17197.1|Name=mRNA_C-linearis_contig99.17197.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=268bp
MPMGFRNTIREVQGTIGTVLDTVEAVKNLLNWTHPPKTLMVYALVALVWV
VLLVVPGRYIVLTLGLLEFSKAWLGAKEPGADEVISDYSAPARPPPPLAT
KLENLLMSLPVDSELAACYAWEAREHSKKAKASLKLREQRARLKLLGAGW
QWEGALRVRDRAGDPWESRYVLLLGHRLAWWGSAKELDDGRKARGQLLLQ
GHAGITHLSPLEAREVIDPRKVVCVFGRSPDGLPHIVVVVVVVFLVWFPL
QLFQLSTSSWTHACLVD*
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mRNA from alignment at C-linearis_contig99:612827..617910+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig99.17197.1 ID=mRNA_C-linearis_contig99.17197.1|Name=mRNA_C-linearis_contig99.17197.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5084bp|location=Sequence derived from alignment at C-linearis_contig99:612827..617910+ (Chordaria linearis ClinC8C monoicous)
GGCCTTGCTCGGGGAGAACTCGCACCTCAGGGAAGGGGACAAGGGGGCCG
GGGCTGGCGCCGCGTCTTCAGGCTCGGCGGGGGGTGGCGGCGGCGGAGGC
GGCGACGGCGGCGGCGGCGACGCGGGTAGAGAGATTGATGGCGGCGGAGG
AGCGGTGGCCAGGCTGCTCGGGATGCCGATGGGCTTCAGGAACACCATCC
GAGAGGTGCAGGGTACGATCGGGACGGTGCTGGACACGGTGGAGGTGAGT
GAGAGTGAGCACGGGATGTGGGGGGTATGTAGGACGACCACGGTTGTGTA
TCCGGATGATGCCGAAGTCGCATCAACGACACGAACAGGTAGCGGCGACT
GGCCGGCGGTACGACACGCCAGGAAAGACGGGGGTTGGGTTTGTGGTTGG
CCAAAGCTCTTGGGCAATGATGTGCAGGCTTGTCGTACGATACATACAGC
GGCTAATTTAGCGGTTTTGTGTGTCCCTCTTCATCTTCATGCTTCGTTTG
GTGTCCTCGGCCGCCCTGCTAGACGGTTCTCCGTGGTCCCGGAATTGTTC
CGGTGGTTGGAACGATTGGCATTTCGCTAAACATTTTCGACCGAAAGCAA
GCATCCTCGTTGCCTCTGCCTCGAAACGGTGACATGCAGACGTGTGACCA
AGGGCCCAACAACTAAATTTCAAGTCGGCAACAAGCAATGTAACCAACCA
ACGCAGCCTGCGCCAAGCCAAGGAACTAAAAACCTATAACACCCCCCCCC
TCGTCGCGCGTTTTTCTCCTTGCTCGTCCATCCGTCCGCGCAACAACCAC
AAAGTAGGCCGTGAAGAACCTCCTGAACTGGACGCACCCCCCGAAAACGC
TGATGGTGTATGCGCTAGTGGCCCTCGTCTGGGTCGTCCTGCTGGTGGTG
CCGGGACGCTACATCGTCCTGACCCTCGGGCTATTGGAGTTTTCGAAGGC
GTGGCTCGGGGCCAAAGAGCCCGGCGCGGACGAGGTGATCTCGGACTACT
CGGCTCCGGCACGCCCCCCTCCCCCCCTCGCCACCAAGCTTGAGAACCTG
CTCATGAGGTGAGTTGCAATAAGGTTTAAGGGTTAAGGGTTCAGGGTTAG
TATTTTCTGTTCTTTGGGCCTGGGGGGGACGGGAGACGCTTAGGGTCGGA
TGAACTATTTGAAAACTGACTGACTGTGGGTGATGGTTGTTGTTGTACTG
GTTCTATTTTGGTAACACCCCTCAGGCTGTGAAGACTGCGCGAGGATCGT
GTCCATGCAGCCGTTTGTGTTTGCGCTTGTGGTCATGTTCACAGCCTGCC
GGTCGACTCCGAGCTGGCGGCATGCTACGCCTGGGAAGCCAGGGAGCACT
CCAAGAAGGCGAAGGCTAGCCTGAAGCTAAGGGAGCAGAGAGCCAGGCTC
AAGCTTCTCGGGGCTGGGTGGCAGTGGGAAGGAGCGCTGAGGGTTCGGGA
CAGGGCTGGAGACCCTTGGGAATCCAGGTTAGCTTGGTTGTTGTTGTTGT
TGTTGTTGTTGTGGATAACCAGATTGAGTTCATCGCGATCTCTCTCCAGG
GATGTGCGGACACTCTATGCGTTCCCATGGGCATCCATGCTGCGGTTCGT
TTCTTCTTCTGTTATCCTTCTGTCGCGACTTTGGTTTTATTTTTCTCCGC
TTCTTTACCAGCTAACGTGTACACACATGCCATTTGCCCGCCGAAACCTA
TGATGATGAAGGTGTACTGTCAGCAAGCTCGGGTTCACAGGAAGACGATC
GTCTACCAGTATCCCAAATGTATCTTGTGCGACGGTCAAATTATGGTGCT
CCCCCGGTCAAGGGTGTGGTTAGACCCCACCTCGCGGTCTAAGCAGCAAT
CACGGCGTTCGCGTGCCTCTGTACTCCTTCCCAAGCAGATACGTTCTGTT
GCTGGGACATCGTCTGGCGTGGTGGGGCAGCGCCAAGGAGTTGGACGACG
GGAGGAAGGCTAGGGGACAGCTCCTGTTGCAGGCATGTGCAGCAAGTCAC
AAGGTCACCATATTTGTCGGCTGGCCTTGGAGCCGAGAGAGCCGACCCGA
TCTATGTTCATGATCGATGTTTGGTTAAGGGGCTGGCAGGACAGGCTTCG
GACAAATACGTAGAGCACAGCCTGGACATGTCGATCGGTTCCTCTCGAGA
AGCCATCTTTGCCGGGTCGACTTGTACGTTGTTTGCCTCTTACGGAATAC
GTCGTATTGACTGCTGTGTCTAATACTTCGAAAGCATCGTGTATTGTTGA
GTTTTGCTTTTGCTACAAGACCCTTCGCTGCTGACGCCACCCATCACCGC
CCACTCTAGGTTTACCATGATAGAGATGTGGTGGTTAGCCCTGTTGAACA
ACCCTCAGCCCTGGCGGCGTGGTGCGGTAAGCGTAGTCGGGGGCATACGC
ATGCACTCGTTTATTCGAGCAGATCTACTTCAAGCAAGGTTTTCTCGTTG
ATATTGATTTTGTTGGGTTCGTTCTTGCTGGCGTGACGTACCAGGGCCAC
GCGGGCATCACGCACTTGTCTCCCTTGGAGGCGAGGGAGGTGATCGACCC
GAGAAAGGTCGTCTGTGTTTTTGGCCGCAGCCCGGACGGGTTGCCACACA
AGGTGGGTGCGTGGGTCAGCATCCCGTGGTTGTTGTTGTTGTTGTTGTTG
TTGTTGTTGTTGTTGTTGTTGTTGTTGTGTTTTTGGTTTGGTTCCCCCTT
CAACTCTTTCAACTTTCAACTTCCTCGTGGACGCATGCATGTCTCGTTGA
CTGATCTCAACGCATGCTCCCCCCCGAAGCGGTTACAATGGAAGGGGAAA
ATTTACCTAAGTTGATGTTGAGGCATCTCATATGCTGGAGCGTTTTTTTT
TTCGTGTGAGTGGATACTGCCTGGTCGCGCAGGTAACGTTCATGAGCGAC
AGCGTTGCCGCGAAAGAGACCCTGgaGAGTGCCGTCTCCTCCGTCGTCGA
GACCAAGCAAGACTAGGGGCTGCTGGAAGTAGGCGACCGAGTCGGCCGGT
GAAATTGTAGACGGGGTTTGGAGGTCTCTTCTTTTGCTGCCCCACTAGCC
AAGTAAAAACATGTGGTGTTCGGAAGGAAGTAGGCGGAGAGGCTTCGGAA
GTAGCACGGGGTTCTGTTTAGGAGCACTATCTCTACTCTCTGTAATATTT
TGCTTTCAAGGGCTCTGTCCGCTTCTGCTAAGTTCGCGCTTGGTTCGTGT
TGGAGGTGGGTAGAAAGGAGTACATTGGAGGCGTAGAGGATGCGCTTCTC
TCTGTTGCCGTCTTTCCTCTCGCTTGTGTTATGTGTTTCGGTTGCGCTGC
CACATTTTTTAGGTTGGAAAAAAATGTGTTGTGTACCTTTTTGCCCCCCT
AGTGTTGGCTAGCTTACAGACCAAACTCTTAAGCTCGCCAACTGTGTTGT
TTCGTGTACGTACCCACTTTCGGGCCAAGTCCCGCTACGTAGCGCCCTAC
ACGGGCGAAGCTGTTGCTGCCGATGGACATGTTTCCGAGATATTCGTTTC
TGCTGACAGAAATATTATGCTGTGGTGGGAGATGCCGAACCGGCCTGTTG
CCCTAAAAAAAGTGAAGGGTGTTGTTTATTTGCGGATTTCCGTCATTTCA
AGGTGTCTCGAGTCGTCATGACACCTCATGACCCCCACAGGAGTCTCCCG
ATACTTTTGCCGCGAGACGTCTGACGGATATTTCTCGCGATTGGAGTCCT
CACGAGAATCCCACGAGACCGGAAGATCGGGAGGTGTCGTGAGCTGCAAT
GAGGTGTGGTAAGGTGTGGTGAGCTGTGGTGAATTATCATGAGGCGCCAT
AAAAAATCACGACAATGCGTGACAGCTCAACCTGTGTTACGCCATTTTAA
ACGCGGCGCTTTTCTTTCCAAATGTCCAAATTTCAATTTTTGGAAGTCAG
AAAAACATGAAATGGCGATTGCGCCGCCCAGATTGGAAGATCCAATGTGG
AACGTTTCCAAAATTTGGAAACAAGTTGAGGCCGAAAAATTTGGAGCGGT
TTTCCAAATTTCAAATTTGGAAAGTTGGAAATTTTGAGGCTTAGACAGTA
TTGGGTCACTCCATGAAACATCTCATGGCAATGAATGGTAGCAGGACTTC
CTCGAGGCTGAGCGCACCAAGCGCGAGACCGGCCGTGGAGCCGATGACAC
TCCGCGCAAGCCGGCAAGCGCGCCAGGGTCGACGTCGATGAGTAGGTAGG
TGGCCTCATCTTCCTTCGATGCTTTTGACCCTTTATTTTCTTGTTCTTGC
ATCTACAGTGTGTCGCACGTGTTTCCTTTGATACTTACTTTTGATTCGGT
TTATCGCGCGTCTGGCTCCACGTTTTTATTTCTGCTGCGTTTTTCTTGTG
GGTCTCTTTTTCGATGGCGGTTACGTACTAGTCCTGCCTTCTTGCATCTG
TGTCGCACTCTGCCGTGCTTGCTGGTTTTTTTTTCGTCTTTCGCTGTTGT
GCGATTCTCTTGTGCGGTTATCTTTCCTTTTTTCCGTGTGTGGACACTTG
TTCAACTGACATCTGTGCCGCCCTCTGTCGTGTTTGCTAGTTTTTTTTTC
GTCTCTCGCTCTTGTGCGGTTGTCTTTTGTTTTTTTCGCATGTGGACACG
CGTTCAACTGACATTTATTTTGCGTACGTGGTAGCTCTCGAGGGATTCCA
TGTTCGACGGCTCCGCCTTGCCGGAGAACATCATCTTAAGTTTTTTTTCG
TTTTTTCTCCTCGACACTACTCTAACTGTTTCTCTGTGGTGATCTTCTCC
CTAAACCTCGCTCTTTCTTACCTTCGCTAGCCTTTCTTGCCACTTACTTC
CCCAGTCTGCTGCTCGACAGGCCCGTCACGACATCCTGTCCGGTACCCCT
ATCATCGGAGCCGGATCTGACATGGGTAACGTCGCCGGCGTGTTCGAGGC
CATTGCGAGATATTGTCCACTTGAAGGTTCACATCTACAGGGTCTATCTA
TCTATGGCCTGGCAACGTCCACGGCCAGCGTACGCTTGTTGTGCGCACTC
GCCGAGACTTCGGCCTTGACTGGAGGTACGCCAACAACTGCAACATCGAC
GACCACCACCGCGTGCTCCAGTGTCTCACCGGAT
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Coding sequence (CDS) from alignment at C-linearis_contig99:612827..617910+

>mRNA_C-linearis_contig99.17197.1 ID=mRNA_C-linearis_contig99.17197.1|Name=mRNA_C-linearis_contig99.17197.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1608bp|location=Sequence derived from alignment at C-linearis_contig99:612827..617910+ (Chordaria linearis ClinC8C monoicous)
ATGCCGATGGGCTTCAGGAACACCATCCGAGAGGTGCAGGGTACGATCGG
GACGGTGCTGGACACGGTGGAGATGCCGATGGGCTTCAGGAACACCATCC
GAGAGGTGCAGGGTACGATCGGGACGGTGCTGGACACGGTGGAGGCCGTG
AAGAACCTCCTGAACTGGACGCACCCCCCGAAAACGCTGATGGTGTATGC
GCTAGTGGCCCTCGTCTGGGTCGTCCTGCTGGTGGTGCCGGGACGCTACA
TCGTCCTGACCCTCGGGCTATTGGAGTTTTCGAAGGCGTGGCTCGGGGCC
AAAGAGCCCGGCGCGGACGAGGTGATCTCGGACTACTCGGCTCCGGCACG
CCCCCCTCCCCCCCTCGCCACCAAGCTTGAGAACCTGCTCATGAGGCCGT
GAAGAACCTCCTGAACTGGACGCACCCCCCGAAAACGCTGATGGTGTATG
CGCTAGTGGCCCTCGTCTGGGTCGTCCTGCTGGTGGTGCCGGGACGCTAC
ATCGTCCTGACCCTCGGGCTATTGGAGTTTTCGAAGGCGTGGCTCGGGGC
CAAAGAGCCCGGCGCGGACGAGGTGATCTCGGACTACTCGGCTCCGGCAC
GCCCCCCTCCCCCCCTCGCCACCAAGCTTGAGAACCTGCTCATGAGCCTG
CCGGTCGACTCCGAGCTGGCGGCATGCTACGCCTGGGAAGCCAGGGAGCA
CTCCAAGAAGGCGAAGGCTAGCCTGAAGCTAAGGGAGCAGAGAGCCAGGC
TCAAGCTTCTCGGGGCTGGGTGGCAGTGGGAAGGAGCGCTGAGGGTTCGG
GACAGGGCTGGAGACCCTTGGGAATCCAGCCTGCCGGTCGACTCCGAGCT
GGCGGCATGCTACGCCTGGGAAGCCAGGGAGCACTCCAAGAAGGCGAAGG
CTAGCCTGAAGCTAAGGGAGCAGAGAGCCAGGCTCAAGCTTCTCGGGGCT
GGGTGGCAGTGGGAAGGAGCGCTGAGGGTTCGGGACAGGGCTGGAGACCC
TTGGGAATCCAGATACGTTCTGTTGCTGGGACATCGTCTGGCGTGGTGGG
GCAGCGCCAAGGAGTTGGACGACGGGAGGAAGGCTAGGGGACAGCTCCTG
TTGCAGATACGTTCTGTTGCTGGGACATCGTCTGGCGTGGTGGGGCAGCG
CCAAGGAGTTGGACGACGGGAGGAAGGCTAGGGGACAGCTCCTGTTGCAG
GGCCACGCGGGCATCACGCACTTGTCTCCCTTGGAGGCGAGGGAGGTGAT
CGACCCGAGAAAGGTCGTCTGTGTTTTTGGCCGCAGCCCGGACGGGTTGC
CACACAGGCCACGCGGGCATCACGCACTTGTCTCCCTTGGAGGCGAGGGA
GGTGATCGACCCGAGAAAGGTCGTCTGTGTTTTTGGCCGCAGCCCGGACG
GGTTGCCACACATTGTTGTTGTTGTTGTTGTTGTGTTTTTGGTTTGGTTC
CCCCTTCAACTCTTTCAACTTTCAACTTCCTCGTGGACGCATGCATGTCT
CGTTGACTGATTGTTGTTGTTGTTGTTGTTGTGTTTTTGGTTTGGTTCCC
CCTTCAACTCTTTCAACTTTCAACTTCCTCGTGGACGCATGCATGTCTCG
TTGACTGA
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