mRNA_C-linearis_contig99.17194.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig99.17194.1
Unique NamemRNA_C-linearis_contig99.17194.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig99.17194.1 vs. uniprot
Match: A0A6H5JCW1_9PHAE (ACPS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCW1_9PHAE)

HSP 1 Score: 499 bits (1286), Expect = 9.240e-169
Identity = 271/444 (61.04%), Postives = 309/444 (69.59%), Query Frame = 2 
Query:  323 PEDQVAGRALLASGVQRWCLDVSEWGELSTDQWEVLLGLLPEADSTRVTAFLRENDRKLALGSRLLQRAVVSKVFGLRFSDVDISRTSESKPFFAGVKRAVEDGSVSPLLKNWNFNVSHHGKYVVIASEPACLCGVDIVDTNGRADDKGPAEDYLRYFTDHFTGDEWETIKRPADDRNKLQRFYLHWGLKEAYVKAIGQGLGYDLRRISFVAGDWVDCCATRHQQPQQQGR--------SSSPTLPGTEENNGDSNVDHPLHRC--------------------------SCS----------RSLAAVAAAAGLQANG----SSGTGSV--DGGSADAAGVGSSRGQEDRLGCECGMGLVAAEVDRVPRPDWSFKVFPFPDGYAACVARGPPSACSRSGREAGVISDPDASERGQSLPQLRFRRVRLEEIVPRDVAARMFGGG 1504
            PE + A R++L SGVQRWCLDVSEWG LS DQW+ LLGLLP A+S RV AFLRENDRKLALGSRLLQRA+VSKVFGL F ++DI RT+ESKPFFAGV +A++DGSVSPLLKNWNFNVSHHGKYV +ASEPACLCGVD+VDTN RA+++GPAEDYL+YFT HFT DEW TIK PADD  KL+RFY+HWGLKEAYVKAIGQGLGYDLRR+SF+ GDWVDC     ++ +   R        +  P  PG ++  G   VD                                SC           + + A    A  + NG    S G  S   D G+A+    G   GQEDRLGC CGMG V  +VD V RPDWSFKVF  PDGYAACVARGPPSACS SG+EAGVISD  ASERGQSLPQLRFR+V LEEIVP + AAR+FG G
Sbjct:   62 PESRAA-RSVLLSGVQRWCLDVSEWG-LSADQWDGLLGLLPNAESARVRAFLRENDRKLALGSRLLQRALVSKVFGLEFDEIDIRRTAESKPFFAGVVKAIDDGSVSPLLKNWNFNVSHHGKYVAVASEPACLCGVDVVDTNRRANEQGPAEDYLQYFTGHFTDDEWTTIKSPADDVEKLRRFYIHWGLKEAYVKAIGQGLGYDLRRVSFLPGDWVDCWFCLQEKQRWPRRCPCPRSLAALDPATPGGQQVGGCGTVDGTXXXXXXXXXXXXXXXXXXXXXXXXVGGVDRSCGGDSKVNNAEGKGIEAEKVRANRRNNGDVVASEGRASTGADAGAAEGR-RGGFWGQEDRLGCACGMGAVTVKVDNVLRPDWSFKVFSLPDGYAACVARGPPSACSPSGQEAGVISDAHASERGQSLPQLRFRKVGLEEIVPPEAAARLFGEG 502
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BLAST of mRNA_C-linearis_contig99.17194.1 vs. uniprot
Match: D8LR25_ECTSI (4\'-phosphopantetheinyl transferase superfamily protein, expressed n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR25_ECTSI)

HSP 1 Score: 373 bits (958), Expect = 1.990e-120
Identity = 193/281 (68.68%), Postives = 216/281 (76.87%), Query Frame = 2 
Query:  338 AGRALLASGVQRWCLDVSEWGELSTDQWEVLLGLLPEADSTRVTAFLRENDRKLALGSRLLQRAVVSKVFGLRFSDVDISRTSESKPFFAGVKRAVEDGSVSPLLKNWNFNVSHHGKYVVIASEPACLCGVDIVDTNGRADDKGPAEDYLRYFTDHFTGDEWETIKRPADDRNKLQRFYLHWGLKEAYVKAIGQGLGYDLRRISFVAGDWVDCCATRHQQPQQQGRSSSPTLPGTEENNGDSNVDHPLHRCSCSRSLAAV--AAAAGLQANGSSGTGSVDG 1174
            A R++L SGVQRWCLDVSEW ELS DQW+ LLGLLP  +S RV AFLRENDRKLALGSRLLQRAVVSKVFGL F ++DI RTSESKPFFAGV +A+ DGSVSPLLKNWNFNVSHHGKYV IASEPACLCGVD+VDTN RA+++GPAEDYL+YFT HFT DEW TIK PADD  KL+RFYLHWGLKEAYVKAIGQGLGYDLRR+SF+ GDWVDC  +  Q+ Q++ R                       RC C RSLAA+  A + G Q  G    G+VDG
Sbjct:   68 AARSVLLSGVQRWCLDVSEW-ELSADQWDGLLGLLPNTESARVRAFLRENDRKLALGSRLLQRAVVSKVFGLEFHEIDIRRTSESKPFFAGVVKAINDGSVSPLLKNWNFNVSHHGKYVAIASEPACLCGVDVVDTNRRANEQGPAEDYLQYFTGHFTDDEWTTIKSPADDMKKLRRFYLHWGLKEAYVKAIGQGLGYDLRRVSFLPGDWVDCWFSL-QEKQRRPR-----------------------RCPCPRSLAALDPATSGGQQVGG---CGAVDG 320
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BLAST of mRNA_C-linearis_contig99.17194.1 vs. uniprot
Match: A0A251UBQ3_HELAN (Putative 4'-phosphopantetheinyl transferase superfamily n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251UBQ3_HELAN)

HSP 1 Score: 172 bits (436), Expect = 3.230e-45
Identity = 88/205 (42.93%), Postives = 122/205 (59.51%), Query Frame = 2 
Query:  365 VQRWCLDVSEWGELSTDQWEVLLGLLPEADSTRVTAFLRENDRKLALGSRLLQRAVVSKVFGLRFSDVDISRTSESKPFFAGVKRAVEDGSVSPLLKNWNFNVSHHGKYVVIASEPACLCGVDIVDTNGRADDKGPAEDYLRYFTDHFTGDEWETIKRPADDRNKLQRFYLHWGLKEAYVKAIGQGLGYDLRRISFVAGDWVDCC 979
            VQRW ++ SEW     + W + + +LP+ + + +T F++  DRK AL SRLLQ A+V +V GL F ++ I+RT E KP+         +  ++    N+NFNVSHHG YV IASEP CL G+DIV        K  A D++R F+ +F+  EWE I     D N L  F+ +W LKEA+VKA+G G+GY L  + F   DW D C
Sbjct:   32 VQRWLVNASEWDPSPNEFW-IAMSVLPQHEHSSITRFVKIEDRKRALVSRLLQYALVHQVVGLPFDEIVINRTPEGKPYL--------EKHLNVKFPNFNFNVSHHGDYVAIASEPICLVGLDIVSC--FIPGKESASDFIRNFSSYFSSSEWEKIVNAGSDDNVLDTFFRYWCLKEAFVKALGTGVGYKLDYVEFHHKDWTDIC 225
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BLAST of mRNA_C-linearis_contig99.17194.1 vs. uniprot
Match: A0A0D2S9T3_GOSRA (ACPS domain-containing protein n=22 Tax=Gossypium TaxID=3633 RepID=A0A0D2S9T3_GOSRA)

HSP 1 Score: 168 bits (425), Expect = 6.300e-44
Identity = 87/206 (42.23%), Postives = 120/206 (58.25%), Query Frame = 2 
Query:  353 LASGVQRWCLDVSEWGELSTDQWEVLLGLLPEADSTRVTAFLRENDRKLALGSRLLQRAVVSKVFGLRFSDVDISRTSESKPFFAGVKRAVEDGSVSPLLKNWNFNVSHHGKYVVIASEPACLCGVDIVDTNGRADDKGPAEDYLRYFTDHFTGDEWETIKRPADDRNKLQRFYLHWGLKEAYVKAIGQGLGYDLRRISFVAGDWV 970
            +  GVQRW +D+S+W   S D +   L LLP+   + +T F++  DRK AL S LLQ  +V +V G+ + D+ I+RT E KPF    +   E         N+NFNVSHHG YV IASEP CL G+DIV  N    +K    +Y++ F+ +F+  EW+ I    ++   L  FY +W LKEAYVKAIG GL Y L ++ F   +W 
Sbjct:    1 MEKGVQRWIVDISKWNPSSND-FSFALSLLPQTHHSSITRFVKMEDRKRALVSLLLQYTLVHEVLGIPYPDIVINRTLEGKPFLECARFCFE-------FPNFNFNVSHHGDYVAIASEPLCLVGLDIV--NFMIPEKETVPEYIQNFSSYFSSSEWDRIISVGNNEEVLAEFYRYWCLKEAYVKAIGSGLAYGLHKVEFHHTNWT 196
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BLAST of mRNA_C-linearis_contig99.17194.1 vs. uniprot
Match: A0A022RAB2_ERYGU (ACPS domain-containing protein n=1 Tax=Erythranthe guttata TaxID=4155 RepID=A0A022RAB2_ERYGU)

HSP 1 Score: 167 bits (424), Expect = 1.350e-43
Identity = 85/205 (41.46%), Postives = 125/205 (60.98%), Query Frame = 2 
Query:  353 LASGVQRWCLDVSEWGELSTDQWEVLLGLLPEADSTRVTAFLRENDRKLALGSRLLQRAVVSKVFGLRFSDVDISRTSESKPFFAGVKRAVEDGSVSPLLKNWNFNVSHHGKYVVIASEPACLCGVDIVDTNGRADDKGPAEDYLRYFTDHFTGDEWETIKRPADDRNKLQRFYLHWGLKEAYVKAIGQGLGYDLRRISFVAGDW 967
            +  GV+RW +D+S+W   ST+ + +++ LLP  D + +T F++  DRK AL SRLLQ  +V++V G+ F D+ I RT E KPF    K  +E         N+NFNVSHHG YV IASEP C+ G+DIV  +   ++   A+ +++ F+ +F+  EW  I   A     L+ FY +W LKEA+VKA+G G+GY L  + F   +W
Sbjct:    3 VGKGVERWVVDISKWRP-STEDFSLIISLLPHCDHSSITRFVKLEDRKRALVSRLLQYVLVNRVLGIPFDDIVIRRTPEGKPFLVCDKSKME-------FPNFNFNVSHHGDYVAIASEPICIVGLDIVSHSAPVNET--AQQFVQSFSTYFSRLEWCHISNAASSDEMLKTFYRYWCLKEAFVKAVGSGVGYKLDDVEFRHTNW 197
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BLAST of mRNA_C-linearis_contig99.17194.1 vs. uniprot
Match: A0A822ZIG6_NELNU (ACPS domain-containing protein n=1 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A822ZIG6_NELNU)

HSP 1 Score: 166 bits (421), Expect = 2.200e-43
Identity = 89/207 (43.00%), Postives = 124/207 (59.90%), Query Frame = 2 
Query:  353 LASGVQRWCLDVSEWGELSTDQWEVLLGLLPEADSTRVTAFLRENDRKLALGSRLLQRAVVSKVFGLRFSDVDISRTSESKPFFAGVKRAVEDGSVSPLLKNWNFNVSHHGKYVVIASEPACLCGVDIVDTNGRADDKGPAEDYLRYFTDHFTGDEWETIKRPADDRNKLQRFYLHWGLKEAYVKAIGQGLGYDLRRISFVAGDWVD 973
            +  GVQRW ++VSEW   S D++  LL LLP  + + +T F++  DRK AL SRLLQ A+V +V G+ F ++ I RT E KP+    K+ +E         N+NFN SHHG YV IASEP CL G+DIV        +    D++  F+ + TG EWE I +     + L +FY +W LKEA+VKAIG G+GY L ++ F   +W +
Sbjct:    1 MEKGVQRWFVNVSEWSP-SGDEFYFLLSLLPPHEHSAITRFVKLEDRKRALVSRLLQYALVHEVLGIPFDEIIIKRTVEGKPYLEYNKQNLE-------FPNFNFNASHHGDYVAIASEPLCLVGLDIVSL--LIPKQETTHDFIGNFSSYLTGLEWENIIKAGTSDDILGQFYRYWCLKEAFVKAIGAGMGYGLDKLEFHHNNWTN 197
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BLAST of mRNA_C-linearis_contig99.17194.1 vs. uniprot
Match: UPI000276A0DD (L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase-like isoform X2 n=2 Tax=Solanum subgen. Lycopersicon TaxID=49274 RepID=UPI000276A0DD)

HSP 1 Score: 164 bits (416), Expect = 2.810e-43
Identity = 81/205 (39.51%), Postives = 122/205 (59.51%), Query Frame = 2 
Query:  353 LASGVQRWCLDVSEWGELSTDQWEVLLGLLPEADSTRVTAFLRENDRKLALGSRLLQRAVVSKVFGLRFSDVDISRTSESKPFFAGVKRAVEDGSVSPLLKNWNFNVSHHGKYVVIASEPACLCGVDIVDTNGRADDKGPAEDYLRYFTDHFTGDEWETIKRPADDRNKLQRFYLHWGLKEAYVKAIGQGLGYDLRRISFVAGDW 967
            L  GV RW +D+SEW   S + +   +  LP+ + + +T F +  DRK AL SRLLQ A++ +V G+ ++ + I RT+E KP+   ++R+ E   ++    N+NFN SHHG +V IASEP CL G+D+V       +K   E++++ F+ +F+  EW  I      R  L  FY +W +KEA+VKAIG G+GY L  I F   +W
Sbjct:    3 LEKGVHRWIVDISEWNP-SPNYFSFAMSFLPQHEHSSITRFFQMEDRKRALVSRLLQYALIHQVLGIPYNGIVIRRTAEGKPYLLCLERSQECDKLNLEFPNFNFNASHHGDFVAIASEPICLVGLDVVSQT--IPEKESVEEFIQSFSSYFSSLEWFNIINAGSSRQILSEFYRYWSVKEAFVKAIGDGVGYKLDTIEFHHKNW 204
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BLAST of mRNA_C-linearis_contig99.17194.1 vs. uniprot
Match: D0NCV0_PHYIT (L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase, putative n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NCV0_PHYIT)

HSP 1 Score: 164 bits (414), Expect = 2.900e-43
Identity = 83/191 (43.46%), Postives = 117/191 (61.26%), Query Frame = 2 
Query:  380 LDVSEWGELSTDQWEVLLGLLPEADSTRVTAFLRENDRKLALGSRLLQRAVVSKVFGLRFSDVDISRTSESKPFFAGVKRAVEDGSVSPLLKNWNFNVSHHGKYVVIASEPACLCGVDIVDTNGRADDKGPAEDYLRYFTDHFTGDEWETIKRPADDRNKLQRFYLHWGLKEAYVKAIGQGLGYDLRRISF 952
            +DV+ W +L++ +W  LL  LP+ +  +VT F+   D+KLAL SRLLQR ++ ++FG+ +  +DI+RT E+KP++  +         +P   +WNFNVSHHG  V IAS+   L GVD+V    R   K   ED+ R FT HF   EWE I+   D+  +  RFY  W LKEAY+KA+G GLG+ L R  F
Sbjct:    7 VDVTAW-DLTSSEWRRLLLQLPDHEQKQVTRFMFAKDQKLALASRLLQRQLIHELFGVEYDTIDIARTPENKPYWNRLPG-------NPAPSSWNFNVSHHGTIVTIASDARSLVGVDVVRLTDRPHRKTSIEDFFRAFTGHFNPGEWEYIRGAEDEDRQYIRFYKLWSLKEAYIKAVGIGLGFSLLRAEF 189
[Close]
BLAST of mRNA_C-linearis_contig99.17194.1 vs. uniprot
Match: A0A6I9TGS1_SESIN (L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase-like n=2 Tax=Sesamum indicum TaxID=4182 RepID=A0A6I9TGS1_SESIN)

HSP 1 Score: 166 bits (419), Expect = 4.000e-43
Identity = 87/207 (42.03%), Postives = 120/207 (57.97%), Query Frame = 2 
Query:  353 LASGVQRWCLDVSEWGELSTDQWEVLLGLLPEADSTRVTAFLRENDRKLALGSRLLQRAVVSKVFGLRFSDVDISRTSESKPFFAGVKRAVEDGSVSPLLKNWNFNVSHHGKYVVIASEPACLCGVDIVDTNGRADDKGPAEDYLRYFTDHFTGDEWETIKRPADDRNKLQRFYLHWGLKEAYVKAIGQGLGYDLRRISFVAGDWVD 973
            L  GVQRW +D++EW E S+D +   +  LP  +   +T F++  DRK AL SRLLQ A+V +V G+ F D+ I RT E KPF  G        +V     N+NFN SHHG YV IASEP CL GVDIV  +   ++   A+ +++ F+ +F+  EW  I         L+ FY +W LKE++VKA+G G+GY L  + F    W D
Sbjct:    3 LEKGVQRWVVDIAEW-EPSSDDFSQAMAFLPHHEYASITRFVKLEDRKRALVSRLLQYALVHQVLGITFDDIVIRRTPEGKPFLVGE-------NVKLGFPNFNFNASHHGDYVAIASEPICLVGVDIVSHSIPVNET--ADKFIQSFSSYFSSLEWYCILNAGSSDEMLKTFYRYWSLKESFVKAMGSGVGYKLDEVEFHHKSWDD 199
[Close]
BLAST of mRNA_C-linearis_contig99.17194.1 vs. uniprot
Match: A0A833T409_PHYIN (4'-phosphopantetheinyl transferase domain-containing protein n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833T409_PHYIN)

HSP 1 Score: 165 bits (417), Expect = 6.870e-43
Identity = 84/192 (43.75%), Postives = 117/192 (60.94%), Query Frame = 2 
Query:  380 LDVSEWGELSTDQWEVLLGLLPEADSTRVTAFLRENDRKLALGSRLLQRAVVSKVFGLRFSDVDISRTSESKPFFAGVKRAVEDGSVSPLLKNWNFNVSHHGKYVVIASEPACLCGVDIVDTNGRADDKGPAEDYLRYFTDHFTGDEWETIKRPADDRNKLQRFYLHWGLKEAYVKAIGQGLGYDLRRISFV 955
            +DV+ W +L++ +W  LL  LP+ +  +VT F+   D+KLAL SRLLQR ++ ++FG+ +  +DI+RT E+KP++            +P   +WNFNVSHHG  V IAS+   L GVD+V    R   K   ED+ R FT HF   EWE I+   D+  +  RFY  W LKEAY+KA+G GLG+ L R  FV
Sbjct:    7 VDVTAW-DLTSSEWRRLLLQLPDHEQKQVTRFMFAKDQKLALASRLLQRQLIHELFGVEYDTIDIARTPENKPYW-------NRPPGNPAPSSWNFNVSHHGTIVTIASDARSLVGVDVVRLTDRPHRKTSIEDFFRAFTGHFNPGEWEYIRGAEDEDRQYIRFYKLWSLKEAYIKAVGIGLGFSLLRAEFV 190
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig99.17194.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JCW1_9PHAE9.240e-16961.04ACPS domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LR25_ECTSI1.990e-12068.684\'-phosphopantetheinyl transferase superfamily pr... [more]
A0A251UBQ3_HELAN3.230e-4542.93Putative 4'-phosphopantetheinyl transferase superf... [more]
A0A0D2S9T3_GOSRA6.300e-4442.23ACPS domain-containing protein n=22 Tax=Gossypium ... [more]
A0A022RAB2_ERYGU1.350e-4341.46ACPS domain-containing protein n=1 Tax=Erythranthe... [more]
A0A822ZIG6_NELNU2.200e-4343.00ACPS domain-containing protein n=1 Tax=Nelumbo nuc... [more]
UPI000276A0DD2.810e-4339.51L-aminoadipate-semialdehyde dehydrogenase-phosphop... [more]
D0NCV0_PHYIT2.900e-4343.46L-aminoadipate-semialdehyde dehydrogenase-phosphop... [more]
A0A6I9TGS1_SESIN4.000e-4342.03L-aminoadipate-semialdehyde dehydrogenase-phosphop... [more]
A0A833T409_PHYIN6.870e-4343.754'-phosphopantetheinyl transferase domain-containi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig99contigC-linearis_contig99:490918..495804 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score372.9
Seed ortholog evalue2.2e-100
Seed eggNOG ortholog2880.D8LR25
KEGG rclassRC00002
KEGG koko:K06133
KEGG ReactionR01625
KEGG Pathwayko00770,map00770
Hectar predicted targeting categoryother localisation
GOsGO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006553,GO:0006575,GO:0006732,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008897,GO:0009058,GO:0009066,GO:0009067,GO:0009085,GO:0009987,GO:0015939,GO:0016053,GO:0016740,GO:0016772,GO:0016780,GO:0019752,GO:0019878,GO:0032787,GO:0034641,GO:0043167,GO:0043169,GO:0043436,GO:0043603,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046872,GO:0051186,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
EggNOG free text desc.holo-[acyl-carrier-protein] synthase activity
EggNOG OGsCOG2091@1,KOG0945@2759
Ec32 ortholog description4'-phosphopantetheinyl transferase superfamily
Ec32 orthologEc-06_004620.1
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons9
Model size1880
Cds size1356
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930854.4664483-UTR-C-linearis_contig99:490917..4912581622930854.4664483-UTR-C-linearis_contig99:490917..491258Chordaria linearis ClinC8C monoicousUTRC-linearis_contig99 490918..491258 -
1690881283.8615015-UTR-C-linearis_contig99:490917..4912581690881283.8615015-UTR-C-linearis_contig99:490917..491258Chordaria linearis ClinC8C monoicousUTRC-linearis_contig99 490918..491258 -
1622930854.4868355-UTR-C-linearis_contig99:491292..4913211622930854.4868355-UTR-C-linearis_contig99:491292..491321Chordaria linearis ClinC8C monoicousUTRC-linearis_contig99 491293..491321 -
1690881283.8755798-UTR-C-linearis_contig99:491292..4913211690881283.8755798-UTR-C-linearis_contig99:491292..491321Chordaria linearis ClinC8C monoicousUTRC-linearis_contig99 491293..491321 -
1622930854.6331646-UTR-C-linearis_contig99:495073..4951341622930854.6331646-UTR-C-linearis_contig99:495073..495134Chordaria linearis ClinC8C monoicousUTRC-linearis_contig99 495074..495134 -
1690881283.956948-UTR-C-linearis_contig99:495073..4951341690881283.956948-UTR-C-linearis_contig99:495073..495134Chordaria linearis ClinC8C monoicousUTRC-linearis_contig99 495074..495134 -
1622930854.6537378-UTR-C-linearis_contig99:495711..4958041622930854.6537378-UTR-C-linearis_contig99:495711..495804Chordaria linearis ClinC8C monoicousUTRC-linearis_contig99 495712..495804 -
1690881283.9690976-UTR-C-linearis_contig99:495711..4958041690881283.9690976-UTR-C-linearis_contig99:495711..495804Chordaria linearis ClinC8C monoicousUTRC-linearis_contig99 495712..495804 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930854.5021741-CDS-C-linearis_contig99:491321..4915671622930854.5021741-CDS-C-linearis_contig99:491321..491567Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 491322..491567 -
1690881283.8874147-CDS-C-linearis_contig99:491321..4915671690881283.8874147-CDS-C-linearis_contig99:491321..491567Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 491322..491567 -
1622930854.5191486-CDS-C-linearis_contig99:491809..4922361622930854.5191486-CDS-C-linearis_contig99:491809..492236Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 491810..492236 -
1690881283.8957233-CDS-C-linearis_contig99:491809..4922361690881283.8957233-CDS-C-linearis_contig99:491809..492236Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 491810..492236 -
1622930854.5327442-CDS-C-linearis_contig99:492614..4927301622930854.5327442-CDS-C-linearis_contig99:492614..492730Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 492615..492730 -
1690881283.9038758-CDS-C-linearis_contig99:492614..4927301690881283.9038758-CDS-C-linearis_contig99:492614..492730Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 492615..492730 -
1622930854.5507717-CDS-C-linearis_contig99:493372..4935041622930854.5507717-CDS-C-linearis_contig99:493372..493504Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 493373..493504 -
1690881283.9121687-CDS-C-linearis_contig99:493372..4935041690881283.9121687-CDS-C-linearis_contig99:493372..493504Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 493373..493504 -
1622930854.568474-CDS-C-linearis_contig99:494080..4941281622930854.568474-CDS-C-linearis_contig99:494080..494128Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 494081..494128 -
1690881283.9226618-CDS-C-linearis_contig99:494080..4941281690881283.9226618-CDS-C-linearis_contig99:494080..494128Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 494081..494128 -
1622930854.586163-CDS-C-linearis_contig99:494397..4945201622930854.586163-CDS-C-linearis_contig99:494397..494520Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 494398..494520 -
1690881283.9317756-CDS-C-linearis_contig99:494397..4945201690881283.9317756-CDS-C-linearis_contig99:494397..494520Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 494398..494520 -
1622930854.6074567-CDS-C-linearis_contig99:494809..4950731622930854.6074567-CDS-C-linearis_contig99:494809..495073Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 494810..495073 -
1690881283.9422967-CDS-C-linearis_contig99:494809..4950731690881283.9422967-CDS-C-linearis_contig99:494809..495073Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 494810..495073 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig99.17194.1prot_C-linearis_contig99.17194.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig99 491322..495073 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig99.17194.1

>prot_C-linearis_contig99.17194.1 ID=prot_C-linearis_contig99.17194.1|Name=mRNA_C-linearis_contig99.17194.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=452bp
MGTCPSAHSAVERGSPGGGGHSQAAPAYGKGRVMTREETGRKGPTNGGSN
EEEDEDPEDQVAGRALLASGVQRWCLDVSEWGELSTDQWEVLLGLLPEAD
STRVTAFLRENDRKLALGSRLLQRAVVSKVFGLRFSDVDISRTSESKPFF
AGVKRAVEDGSVSPLLKNWNFNVSHHGKYVVIASEPACLCGVDIVDTNGR
ADDKGPAEDYLRYFTDHFTGDEWETIKRPADDRNKLQRFYLHWGLKEAYV
KAIGQGLGYDLRRISFVAGDWVDCCATRHQQPQQQGRSSSPTLPGTEENN
GDSNVDHPLHRCSCSRSLAAVAAAAGLQANGSSGTGSVDGGSADAAGVGS
SRGQEDRLGCECGMGLVAAEVDRVPRPDWSFKVFPFPDGYAACVARGPPS
ACSRSGREAGVISDPDASERGQSLPQLRFRRVRLEEIVPRDVAARMFGGG
L*
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mRNA from alignment at C-linearis_contig99:490918..495804-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig99.17194.1 ID=mRNA_C-linearis_contig99.17194.1|Name=mRNA_C-linearis_contig99.17194.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4887bp|location=Sequence derived from alignment at C-linearis_contig99:490918..495804- (Chordaria linearis ClinC8C monoicous)
CACAGCAGTCTCAAGTCCACCTGCGGCTAAAAGTGTGTTTCAGCCAACAT
ATCTAGTTCTCAGCCCCGCTCGATACCCGGCCGCTGTGACGAGGTGCGAT
GATTCTTTCTAAAGCGTTGCCTTGTTGCCGTGGTATCGTCGTGTATGCGA
GAGCCTACGTTTGCCTTCCTCTTTGTTCAAAAGGATATGTTGCATGTTGG
GCTGGTCTTGGCGCTGGCCACTGGACATCTCATGAGGCAGCTCAAGTTGT
TAAGGCGTGGTGGCGATGCACAGACATGTAGACAATCTCCGCGGCATGGA
AAGAGTCGAAAAGTGTGTGCCGTTGAATGGGCTAGAATTTGTATGTTGGA
CACCGGGTCTGTCCGGCTGTTGGAGCTTGGGGTTGCATCTTGGAAAGTGA
GTGCCGCGGAAGAGAGGAGCATGAAAGCTTTCCCGACCCACTGTCGGTGC
TGGGATCAACCTTAACGATGTACATAGACGTGTGCGTGTATTCGTACCTT
GTACCCGCATTTTTCGTAGTGGAACCAAGTACAAGAGATCCACAGCAGTT
GGTACAGCAGCAGTAAGCACTTCCGTGCTACTCTGATGTAGCACGCGTGT
CCCGAGAACATGAACATAAAAACATGATGTACTGTAAGTCGAACGCCTGA
CTGGTTGAATCTGCTCACAGGCATAGGGTTACTACCAACAGTCCTCAGCG
CACGAACGGCGGTTGGTGCCCCCCGCCGCCAATGGGCACGTGCCCCTCCG
CGCACAGTGCAGTTGAGCGGGGCAGCCCCGGAGGCGGCGGCCACTCACAA
GCAGCGCCGGCTTACGGTAAAGGGCGGGTGATGACACGAGAAGAAACGGG
GAGGAAAGGGCCGACAAATGGGGGGTCGAATGAGGAGGAAGATGAAGATC
CGGAGGACCAGGTTGCGGGGAGAGCCTTGTTGGCGTCCGGCGTGCAGCGG
TGGTGCCTGGACGTCAGCGAGTGGGGCGAGCTGTCCACCGACCAGGCGAG
TGAAAGGAATGCAGAGGCAGGCGGACAGATATATGAGGCAGAGACGGCTC
GTGAAGGGTGATGGCGCAGAACGGCTGATTGTGTGGGCAGTTGAATTATG
ACTACAGGGGCGGCGACAAAAGAGAGAGGCCCAAAACCGCACCTGTGCAG
CAGTCCAGCAGTGAAGGCACCCCAACTATGTAGACTAGTCAACTTGACTG
TCTTTTCCCCTCCCAGGCCTAATGGACCACCTTTGATGTCCCCACAACCA
ATATCGCCATCATCCACAACAACGACACCGACAGTGGGAAGTGTTGTTGG
GTCTCTTGCCCGAGGCAGACAGCACTCGCGTGACGGCGTTTTTGAGGGAG
AACGACCGAAAGCTGGCGCTGGGGAGCCGCCTGCTACAGCGAGCGGTAGT
TTCGAAGGCAAGAAAAACAGAACACCGAGAGCGCGGAACCAGACTACCAA
TTTTGGTCTGGGCTTTCTTGGTATTGGGGATGTGCACAAGGACTGCAAGA
ATCGTAGGAATAAGCGATTCGGTCCGTGAAGTGTTGGTAGCCGTGATACA
CGCGTACACGTGTAAGCAGTGATGGATCGCGTAGATTGACCGTGTTTTTT
TCGTCTCGTTTGTGAGTGTGTGTGTGTTGCATCATCCTCCTTACTCCCGT
GCCCCACTCTCTATTCTCTTATTCAGGTTTTCGGCCTCAGGTTTTCCGAC
GTGGACATCTCGCGAACCTCTGAGGTAACGTTGTGGACAGCACAGACGCA
AACGTAAATTTACATTGAAGCACATACAAATGCGAAAACCAACAGCAGAC
AGCAACAAGCGACTCTCAGGAGGACAATCGCCTCATCCAAGTCGACGGGC
GTTACAGCAGAACGAGAGAATGAAAGAGAGGCCATTCGCTGGCGTCGTGA
TCAATGTCTACATGGTCTACGTGAAGCTAGATCGGGGAAGGCGTGCGTAC
GGGCAACAACCGTTGCCTGTTGTACGCACATGCGGTCGTCGGTGGAAGAG
CGCCTCGTGGAGAAGAGGCAGCGACGCTCTCAGACCCAGTCGTGTCGTGT
TGTGTTGCTCTGCTCCTCCCACTCGCCTCGCTCGCACCTCGCTCGCCCCG
CGCCTCTGATTTTCCCGCGTCGTTTTTTTTCTCGCGGCGGCTCCGTTTTT
CCCTTCCCCCCGGCTCGTGTGTTTTTGTCATGCACCGCGTCAACTTGATC
GGTATGTCTGGTCCCCTCCTTCCTGTCGCTGGAAACGAAAACTGCCATCG
TACCGGACACGAAACATTCGCAAAACGCCTAAACCCGAAAAAATGACCAG
AGCAAGCCGTTTTTTGCCGGGGTCAAAAGGGCGGTCGAGGACGGCTCGGT
GTCGCCTCTGCTCAAGAACTGGAACTTTAACGTTTCGCACCACGGGAAGT
ACGTCGTCATCGCATCGGAACCTGCGTGTCTGGTGAGAGCTGTGCCTGTG
TGTGCTTGGGTCGTCCTAAATTTGTATTTTATGTTGTCTTGCTTCCGTGC
CGTGTTTTCGTGTTGCACGCATGCGTCCTGGGGCTTCGTTTGGGGTGTCT
TTGGTGACGTTTGTGGTTTGTGCTCGGATTTGTTTTCGCCGTGGGTAGAA
GCTTGCGTAGTCGATTCGCCGAACCCGGAACCTGGGTGTCTGTTTGCGGC
CGAACATCCGTCCTATTTTCCCGGACGTCCTACGTGCGTTCTCCGTAAAA
ATATTTCGCGTCTTTGTTCATGTGCAACCTCGGCGGTTGCTGCCTGGTGT
GCAGGTACAGTACTGCTGTGTGTATTTCTGGTGTATTTCTGATATGTTTC
TGAGACAACAAATCGGAGAAAACAATGTTAGCGTCGTGTCGTGTCCTGTC
CTGTCGTGTCGGGTGGTTCTGGCGGAGTCGTTCCCAGACGATAACTGGTC
TGCGAGCTGCCGGATTGTCCTCGAACCCACTGCAAACATCAACGTTTGTC
TCGTGCTCAAAACGTTTTTTTCTCAAAGATTGCCGTCTTTTAATTTGAAG
ACAACAACAACAACAACAACAACCGTCAGCACTTCGACACGCCCGCTCTG
TTTGTCCTTGTGGTATAAATGTAGTGCGGGGTGGACATCGTAGACACGAA
CGGGCGAGCAGACGACAAAGGTCCCGCGGAGGACTACCTCCGGTATTTCA
CGGACCACTTCACGGGCGACGAGTGGGAAACAATCAAAAGGTGGCTGTTG
GTGGGGATCGGGAGGGGGAGGCTGGCGGGGGGGGTGCTGAAATGAACGCT
TCGTGTCAGAAAAGAAGGGAAAGTTCAAGCTTGTTCGAAACGAATTTTGT
CCCCTTCTGTTTTCGCTTGCGTACGGTACACGCCAGAGGCATGGCGTGAG
AGAGTTTTTCGCGAGCCCCCCCTTTCCGACGGCCACAAGCAGGTTCCGGT
GTTCTAAACCCTTGTCTTTGGGTCCTGTCTGAGGCATGCTTTGCGATCGC
TCGGTGTCCACGCCAAAGGGAAATACGTCGAGCTACAAGCAGCATTGTTT
GTATGTTTTTTTAATGCCCGCCCGCATGGTGCCTCCGCTTCCGGGCACGC
AATTTTCGTTCGTCGCAGGCCCGCCGACGATCGGAACAAGCTGCAGCGCT
TCTACCTCCACTGGGGCCTGAAGGAGGCCTACGTCAAGGCCATCGGTCAG
GGCCTTGGGTACGACCTGCGTCGGATCTCGTTCGTGGCGGGTGACTGGGT
CGATTGCTGCGCCACCCGGCACCAGCAGCCGCAGCAGCAAGGGCGCTCCT
CCTCGCCCACGTTACCGGGCACGGAGGAAAACAACGGGGACAGCAATGTC
GACCACCCTTTGCATCGGTGTTCCTGCTCGCGATCTCTCGCCGCCGTTGC
CGCCGCGGCCGGGTTGCAGGCGAACGGCAGCAGTGGGACTGGGAGTGTAG
ACGGTGGTAGCGCAGATGCGGCGGGAGTGGGCAGCTCTCGGGGGCAAGAG
GACCGCTTGGGGTGCGAGTGTGGAATGGGTCTCGTGGCGGCGGAGGTGAG
TCCGTCTGTGCTCGTTCGAACCTACTACTGTGAGGTCTGCGGCGATGGCG
GTGCTGTTGTTTTACGTGTTGTGTTGCTGCCGCTGGCGTCTCGAGCCTTT
CGGAGTGGCACCTCACCTCTCTGTGTTTTGCTCAACAGTTACGTAGGATC
CAACACCGCACGCACAGTCACACACGCTCCACCCGGCCGCTAACCTCGCC
CCGTCGCTCCCACCACAACAATGACCCGCAATATAAGGTTGACCGCGTAC
CGCGACCGGACTGGTCTTTCAAGGTGTTTCCATTTCCGGACGGCTACGCG
GCGTGCGTGGCGAGGGGGCCGCCGTCCGCGTGCTCCCGGTCGGGGCGGGA
GGCCGGGGTGATCTCAGACCCAGACGCGTCTGAACGTGGGCAGTCGTTGC
CGCAGCTACGGTTCCGCAGAGTTAGGCTGGAGGAGATTGTTCCCAGGGAT
GTGGCGGCTAGGATGTTCGGTGGCGGGTTATAGCGTTGACTGCTGCTGCT
GCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGGTACTGTTAGGTTAGGTTT
CTTGTAGTTTTGGCGTGTGAGTGCGCCATGTAGAAAGCGAGAGAGTAGCG
ACAACTTGATTCGGTGCGGTACGTGCCCATGTTTTGAGGGAAACCTTCTT
TTTGCATGTTAGCATGGTGCGGTCGCCCCGGTGGTCTAGTTGGTATCCCC
GCACACCTTCTAGCTTCCAGGTCACGGGTTTGAATGCCGGCGTATGCGGA
TCTTTTCTCACAATAAAAACCGTGAGTTTTTCTCTCAAATACGTCCCTGG
TTTGTGGAAAGCGCTATTATAGTCGTGTGTACACAGAGGGAAGAGATTGC
CGCGCTCTTCTCGCATTAAAAACCAAAGGCGGAGCAC
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Coding sequence (CDS) from alignment at C-linearis_contig99:490918..495804-

>mRNA_C-linearis_contig99.17194.1 ID=mRNA_C-linearis_contig99.17194.1|Name=mRNA_C-linearis_contig99.17194.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2712bp|location=Sequence derived from alignment at C-linearis_contig99:490918..495804- (Chordaria linearis ClinC8C monoicous)
ATGGGCACGTGCCCCTCCGCGCACAGTGCAGTTGAGCGGGGCAGCCCCGG
AGGCGGCGGCCACTCACAAGCAGCGCCGGCTTACGGTAAAGGGCGGGTGA
TGACACGAGAAGAAACGGGGAGGAAAGGGCCGACAAATGGGGGGTCGAAT
GAGGAGGAAGATGAAGATCCGGAGGACCAGGTTGCGGGGAGAGCCTTGTT
GGCGTCCGGCGTGCAGCGGTGGTGCCTGGACGTCAGCGAGTGGGGCGAGC
TGTCCACCGACCAGATGGGCACGTGCCCCTCCGCGCACAGTGCAGTTGAG
CGGGGCAGCCCCGGAGGCGGCGGCCACTCACAAGCAGCGCCGGCTTACGG
TAAAGGGCGGGTGATGACACGAGAAGAAACGGGGAGGAAAGGGCCGACAA
ATGGGGGGTCGAATGAGGAGGAAGATGAAGATCCGGAGGACCAGGTTGCG
GGGAGAGCCTTGTTGGCGTCCGGCGTGCAGCGGTGGTGCCTGGACGTCAG
CGAGTGGGGCGAGCTGTCCACCGACCAGTGGGAAGTGTTGTTGGGTCTCT
TGCCCGAGGCAGACAGCACTCGCGTGACGGCGTTTTTGAGGGAGAACGAC
CGAAAGCTGGCGCTGGGGAGCCGCCTGCTACAGCGAGCGGTAGTTTCGAA
GTGGGAAGTGTTGTTGGGTCTCTTGCCCGAGGCAGACAGCACTCGCGTGA
CGGCGTTTTTGAGGGAGAACGACCGAAAGCTGGCGCTGGGGAGCCGCCTG
CTACAGCGAGCGGTAGTTTCGAAGGTTTTCGGCCTCAGGTTTTCCGACGT
GGACATCTCGCGAACCTCTGAGGTTTTCGGCCTCAGGTTTTCCGACGTGG
ACATCTCGCGAACCTCTGAGAGCAAGCCGTTTTTTGCCGGGGTCAAAAGG
GCGGTCGAGGACGGCTCGGTGTCGCCTCTGCTCAAGAACTGGAACTTTAA
CGTTTCGCACCACGGGAAGTACGTCGTCATCGCATCGGAACCTGCGTGTC
TGAGCAAGCCGTTTTTTGCCGGGGTCAAAAGGGCGGTCGAGGACGGCTCG
GTGTCGCCTCTGCTCAAGAACTGGAACTTTAACGTTTCGCACCACGGGAA
GTACGTCGTCATCGCATCGGAACCTGCGTGTCTGTGCGGGGTGGACATCG
TAGACACGAACGGGCGAGCAGACGACAAAGGTCCCGCGGAGGACTACCTC
CGGTATTTCACGGACCACTTCACGGGCGACGAGTGGGAAACAATCAAAAG
TGCGGGGTGGACATCGTAGACACGAACGGGCGAGCAGACGACAAAGGTCC
CGCGGAGGACTACCTCCGGTATTTCACGGACCACTTCACGGGCGACGAGT
GGGAAACAATCAAAAGGCCCGCCGACGATCGGAACAAGCTGCAGCGCTTC
TACCTCCACTGGGGCCTGAAGGAGGCCTACGTCAAGGCCATCGGTCAGGG
CCTTGGGTACGACCTGCGTCGGATCTCGTTCGTGGCGGGTGACTGGGTCG
ATTGCTGCGCCACCCGGCACCAGCAGCCGCAGCAGCAAGGGCGCTCCTCC
TCGCCCACGTTACCGGGCACGGAGGAAAACAACGGGGACAGCAATGTCGA
CCACCCTTTGCATCGGTGTTCCTGCTCGCGATCTCTCGCCGCCGTTGCCG
CCGCGGCCGGGTTGCAGGCGAACGGCAGCAGTGGGACTGGGAGTGTAGAC
GGTGGTAGCGCAGATGCGGCGGGAGTGGGCAGCTCTCGGGGGCAAGAGGA
CCGCTTGGGGTGCGAGTGTGGAATGGGTCTCGTGGCGGCGGAGGCCCGCC
GACGATCGGAACAAGCTGCAGCGCTTCTACCTCCACTGGGGCCTGAAGGA
GGCCTACGTCAAGGCCATCGGTCAGGGCCTTGGGTACGACCTGCGTCGGA
TCTCGTTCGTGGCGGGTGACTGGGTCGATTGCTGCGCCACCCGGCACCAG
CAGCCGCAGCAGCAAGGGCGCTCCTCCTCGCCCACGTTACCGGGCACGGA
GGAAAACAACGGGGACAGCAATGTCGACCACCCTTTGCATCGGTGTTCCT
GCTCGCGATCTCTCGCCGCCGTTGCCGCCGCGGCCGGGTTGCAGGCGAAC
GGCAGCAGTGGGACTGGGAGTGTAGACGGTGGTAGCGCAGATGCGGCGGG
AGTGGGCAGCTCTCGGGGGCAAGAGGACCGCTTGGGGTGCGAGTGTGGAA
TGGGTCTCGTGGCGGCGGAGGTTGACCGCGTACCGCGACCGGACTGGTCT
TTCAAGGTGTTTCCATTTCCGGACGGCTACGCGGCGTGCGTGGCGAGGGG
GCCGCCGTCCGCGTGCTCCCGGTCGGGGCGGGAGGCCGGGGTGATCTCAG
ACCCAGACGCGTCTGAACGTGGGCAGTCGTTGCCGCAGCTACGGTTCCGC
AGAGTTAGGCTGGAGGAGATTGTTCCCAGGGATGTGGCGGCTAGGATGTT
CGGTGGCGGGTTATAGGTTGACCGCGTACCGCGACCGGACTGGTCTTTCA
AGGTGTTTCCATTTCCGGACGGCTACGCGGCGTGCGTGGCGAGGGGGCCG
CCGTCCGCGTGCTCCCGGTCGGGGCGGGAGGCCGGGGTGATCTCAGACCC
AGACGCGTCTGAACGTGGGCAGTCGTTGCCGCAGCTACGGTTCCGCAGAG
TTAGGCTGGAGGAGATTGTTCCCAGGGATGTGGCGGCTAGGATGTTCGGT
GGCGGGTTATAG
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