mRNA_C-linearis_contig99.17188.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig99.17188.1
Unique NamemRNA_C-linearis_contig99.17188.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig99.17188.1 vs. uniprot
Match: D7G0H8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0H8_ECTSI)

HSP 1 Score: 371 bits (953), Expect = 1.680e-119
Identity = 195/321 (60.75%), Postives = 239/321 (74.45%), Query Frame = 2
Query:   74 VNPRELVDKGDDRGFRALHVAVMMGAPDCAKKLLEAGADPKAFTKDGATPIVMAAQGSGVAGHPELEEGGAAKCIQHLLDAGADQTLRDEAVGTVPLHVAVYRGGPGVLEALLAGPGGEVAANTKNSEGATXXXXXXXXXXDSAP-EALTLLREDCPVKMDVDAADDSGRTPLLGASHYGHADVVERLLAAGADPSLRDSGGMSPLSAAAWRGKEDCLGALLDTDSGVATLEMASNLGATPLIFACQENHKSIAERLIAAGASLEANDLTGKTPYLTAKIQNASACLEFLREKHGRPTPEEDSFDFWDATAAVFPKGSGSI 1033
            +NPRELV++ +++GF ALH+AVMMGA DCA+KLL+AGADPKA T +GATPI MAAQG+G  G PEL+EGG              QT RD+ VGTVPLH AVY G   V   LLAGPGGEVA NTK+S+GAT           + P  A+ LL E CPV +DV   DDSGRTPL  A+H+GHA+VV+ LLAAG+DPSL+DS G+SPLSA AW GKE CL A+L T+ G+ATLE+ +NLGATPLIFACQEN+K IA++LIAAGASL+A DLTG+TPY+ AK Q ASACL+ L E+HGRP+ EE+SF+F D  + V   G G++
Sbjct:    1 MNPRELVNRREEQGFTALHIAVMMGAADCARKLLDAGADPKASTPEGATPITMAAQGTGQPGAPELQEGGXXXXXXXXXXXXXXQTERDKVVGTVPLHTAVYSGRLEVFNTLLAGPGGEVAVNTKDSQGATPLHSACRAKGAAGPVAAMALLEEGCPVAVDVSVRDDSGRTPLFDAAHHGHAEVVKLLLAAGSDPSLQDSSGLSPLSATAWLGKEACLDAILGTERGLATLELTNNLGATPLIFACQENNKDIAKKLIAAGASLDAKDLTGQTPYIIAKAQKASACLKLLTEEHGRPSQEEESFNF-DGLSMVTNLGGGTL 320          
BLAST of mRNA_C-linearis_contig99.17188.1 vs. uniprot
Match: A0A6H5KW25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW25_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 3.170e-23
Identity = 55/82 (67.07%), Postives = 67/82 (81.71%), Query Frame = 2
Query:  632 LLAAGADPSLRDSGGMSPLSAAAWRGKEDCLGALLDTDSGVATLEMASNLGATPLIFACQENHKSIAERLIAAGASLEANDL 877
            LLAAG+DPSL+DS G+S +SA  W GKE CL  +L T+ G+ TLE+ +NLGATPLIFACQEN+K IA +LIAAGASL+A DL
Sbjct:    8 LLAAGSDPSLQDSSGLSSVSATTWLGKEACLDPILGTERGLTTLELTNNLGATPLIFACQENNKGIA-KLIAAGASLDAKDL 88          
BLAST of mRNA_C-linearis_contig99.17188.1 vs. uniprot
Match: A0L850_MAGMM (Ankyrin repeat-like protein n=1 Tax=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 17883 / MC-1) TaxID=156889 RepID=A0L850_MAGMM)

HSP 1 Score: 84.0 bits (206), Expect = 6.570e-13
Identity = 93/324 (28.70%), Postives = 130/324 (40.12%), Query Frame = 2
Query:  119 RALHVAVMMGAPDCAKKLLEAGADPKAFTKDGATPIVMAAQGSGVA--------GHPELEEGGA--------------AKCIQHLLDAGADQTLRDEAVGTVPLHVAVYRGGPGVLEALLAGPGGEVAANTKNSEGATXXXXXXXXXXDSAPEALTLLREDCPV----------------------------KMDVDAADDSGRTPLLGASHYGHADVVERLLAAGADPSLRDSGGMSPLSAAAWRGKEDCLGALLDTDSGVATLEMASNLGATPLIFACQENHKSIAERLIAAGASLEANDLTGKTPYLTAKIQNASACLEFL 940
            + L+VA+  G  D  K LLE GAD       G  P+ +AA  + +A        G  EL+  G+               + ++ LL  GAD TL DE +G  PLHVA ++      EALL    G+V  + +     T              + L  +  D  +                            K++VDA  +   T L  A   GH ++V+ LLA GAD +L D  G +PL  AA   +  C  ALL   SG   ++  +    T L  A  + H  + + L+A GA     D  G TP   A I N  AC E L
Sbjct:  621 KGLNVAIFSGRDDILKYLLEEGADATLAGAKGYAPLHIAAALNKLACAEALLGSGKVELDARGSHSSTALHLAVMQGHVEMVKLLLAVGADATLADE-IGNTPLHVAAFKNELACAEALLGS--GKVDVDARAEHILTALNMAVMQGHVEMVKLLLAVGADATLADEAGQAPLNVAAGNNELACAAALLIYGKVNVDARAEHSGTALNMAVIQGHVEMVKLLLAVGADATLADEIGNTPLHNAAINNELACAEALLG--SGKGDVDARAEHILTALNMAVIQGHVEMVKLLLAVGADATLADEFGNTPLHNAAINNELACAEAL 939          
BLAST of mRNA_C-linearis_contig99.17188.1 vs. uniprot
Match: A0A6H5IPC4_9HYME (Uncharacterized protein n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5IPC4_9HYME)

HSP 1 Score: 81.3 bits (199), Expect = 4.870e-12
Identity = 93/336 (27.68%), Postives = 137/336 (40.77%), Query Frame = 2
Query:   92 VDKGDDRGFRALHVAVMMGAPDCAKKLLEAGADPKAFT-KDGATPIVMAAQGSGVAGHPELEEGGA-----------------------AKCIQHLLDAGADQT-------LRDEAVGTVPLHVAVYRGGPGVLEALLAGPGGEVAANTKNSEGATXXXXXXXXXXDSAPEALTLLREDCPVKMDVDAADDSGRTPLLGASHYGHADVVERLLAAGADPSLRDSGGMSPLSAAAWR--GKEDCLGALLDTDSGVATLEMASNLGATPLIFACQENHKSIAER-LIAAGASLEANDLTGKTPYLTAKIQNASACLEFLREKHGRPTPEEDSFDFWDA 997
            V+  D+ G+   H A   G  D AKK L+ G DP     K G +P+ +A + +       L   GA                        K +  +L    D+         RD+  G  PLH A++ G   ++E LL        AN K   G T          +     L  L ++  +++ +DA D+ G TPL  A+  G+ ++VERLL  GADP+L ++ G +PL   A R  G E    A+ DT   V  ++   + G TPL+ A +  H     R L+  GA     +  GKTP      +N +  L  L             F+ WDA
Sbjct:  147 VNYTDESGYTHFHAACKCGLEDVAKKFLDRGQDPSCVVPKTGDSPLHLALKNNKKEVSKLLLRNGANLISANSKGKTPLHLICNLYVNNGKELAEMLFKFCDEKRLPVKIDARDDE-GNTPLHAAIFSGSIDLVEVLLRRGANPTLANDK---GKTPLHVICPRNGNVGLSKLFELNDELQLRVPIDARDNEGSTPLHLATSCGNEELVERLLRRGADPTLANAEGRTPLHYVAERSRGVERFFRAIEDTWHTVQ-IDARDSEGDTPLLLALKGGHDVQNVRGLLRRGADPSLANKDGKTPLHVICQRNENRVLLRL------------FFEIWDA 465          
BLAST of mRNA_C-linearis_contig99.17188.1 vs. uniprot
Match: A0A6H5I8N0_9HYME (Uncharacterized protein n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5I8N0_9HYME)

HSP 1 Score: 74.3 bits (181), Expect = 4.430e-10
Identity = 86/307 (28.01%), Postives = 137/307 (44.63%), Query Frame = 2
Query:  107 DRGFRALHVAVMMGAPDCAKKLLEAGADPKAFTKDGATPIVMAAQGSGVAGHPELEEGGAAKCIQHLLDAG---ADQTLRD--EAVGTVPLHVAVYRGGPGVLEALLAGPGGEVAANTKNSEGATXXXXXXXXXXDSAPEALTLLREDCPVK---MDVDAADDSGRTPLLGASHYGHADVVERLLAAGADPSLRDSGGMSPLSAAAWRGKEDCLGALLDTDSG---VATLEMASNLGATPLIFACQENHKSIAERLIAAGASLEANDLTGKTP-YLTAKIQNASACLEFLRE--KHGRPTPEEDSFD 985
            + G   LHVA+     +  + LL+ GA+P      G TP  +  Q     G  +L    A K +Q + D G   +   + D  + +G  PLH+AVYR    ++E LL     E+  N  ++EG+T          D   +   +L + C  K   + V+  D  G TPL+ A    H  ++E LL  GADP+L +S G++PL     R  ++    L +        A +    +LG   L FA  ++H ++ E L+  GA   +    G T  ++ AK ++ +  +E L E  K     P  D+ D
Sbjct:  179 ETGDTPLHVALYSEKKEVFELLLKKGANPNVANIKGLTPFHVICQQYYANG--DL----ARKFLQAIYDIGLKLSSSFIIDAPDPLGQTPLHMAVYRRRKVLVELLL---NVEIDPNLTDAEGSTALHIVCKSI-DEDYKLTEMLFKGCDDKHRLLQVNTQDKEGDTPLIWAVQRQHRKLMEFLLRRGADPTLANSRGLTPLRIVCIRKDDESATILFEHSQDHYKSALVHTRDSLGQLSLNFALDKSHPTLLELLLKHGADPNSACADGWTSLHVIAKRRDLAPMMEKLFEPSKPNYKPPRVDARD 475          
BLAST of mRNA_C-linearis_contig99.17188.1 vs. uniprot
Match: A0A7S0SR91_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SR91_9CHLO)

HSP 1 Score: 69.3 bits (168), Expect = 6.100e-10
Identity = 39/93 (41.94%), Postives = 55/93 (59.14%), Query Frame = 2
Query:  578 RTPLLGASHYGHADVVERLLAAGADPSLRDSGGMSPLSAAAWRGKEDCLGALLDTDSGVATLEMASNLGATPLIFACQENHKSIAERLIAAGA 856
            RTPL  A ++G+   V+ LL  GADP+ +D+   SPL AAA +G+ D + AL+    G   L++   LG TPL  A Q  HK +   L++AGA
Sbjct:    7 RTPLWAACYHGNTGAVQVLLKVGADPNAQDATFASPLVAAASKGRNDTVSALILAAGGKLDLDLTEMLGCTPLWAAAQGGHKDVVFTLMSAGA 99          
BLAST of mRNA_C-linearis_contig99.17188.1 vs. uniprot
Match: A0A6H5IS62_9HYME (Uncharacterized protein n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5IS62_9HYME)

HSP 1 Score: 73.9 bits (180), Expect = 7.440e-10
Identity = 78/295 (26.44%), Postives = 120/295 (40.68%), Query Frame = 2
Query:   92 VDKGDDRGFRALHVAVMMGAPDCAKKLLEAGADPKAFTKDGATPIVMAAQGSGVAGHPELEEGGAAKCIQHLLDAGADQTLRDEA---VGTVPLHVAVYRGGPGVLEALLAGPGGEVAANTKNSEGATXXXXXXXXXXDSAPEALTLLREDCPVKMDVDAADDSGRTPLLGASHYGHADVVERLLAAGADPSLRDSGGMSPLSAAAWR--GKEDCLGALLDT---DSGVATLEMASNLGATPLIFACQENHKSIAERLIAAGASLEANDLTGKTP--YLTAKIQNASACLEFLRE 946
            +D  + RG  AL +A+     +  + LL  GADP      G+TP+          G  E +     +  Q   D G  +T++ +A    G  PLH+A+      +++ LL       +A+   S              D          +    ++ V+A D+SG TPL  A   G     E LL   A+P   +  G +PL     R  G+ D + AL +          ++   NLG TPL  A    H+ +AE L+  GA   A D  G TP  Y+  + ++ +  LE L E
Sbjct:  243 IDAKNKRGHTALQLAIGRRLKNVLELLLRRGADPNLAAATGSTPLHYIC----ARGFDEFDVALMQRYFQVCDDIGKTRTVQIDARDNEGRTPLHLAMLNYTWVMVKTLLERGADPTSADKHKS--TPLHNICKTHSGDGFIRKFFKSNDSEGKRVQVNAEDESGDTPLHLALRIGSKATCEYLLRRDANPDAANKKGWTPLHVVCGRRVGRNDLVNALFEVGCEQDKRKRVDARDNLGRTPLHLALARGHRRLAESLLVKGADPVAADAAGSTPLHYVCDREEDDAGSLELLFE 531          
BLAST of mRNA_C-linearis_contig99.17188.1 vs. uniprot
Match: A0A6H5IRR4_9HYME (Uncharacterized protein n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5IRR4_9HYME)

HSP 1 Score: 72.8 bits (177), Expect = 2.050e-9
Identity = 78/274 (28.47%), Postives = 117/274 (42.70%), Query Frame = 2
Query:   92 VDKGDDRGFRALHVAVMMGAPDCAKKLLEAGADPKAFTKDGATPIVMAAQGSGVAGHPELEEGGAAKCIQHLLDAGADQTLRDEAV---GTVPLHVAVYRGGPGVLEALLAGPGGEVAANTKNSEGATXXXXXXXXXXDS-APEALTLLREDCPVKMDVDAADDSGRTPLLGASHYGHADVVERLLAAGADPSLRDSGGMSPLSAAAWRGKEDCLGA----LLDTDSGVATLEMASNLGATPLIFACQENHKSIAERLIAAGASLEANDLTGKT 889
            +D  D  G   LH+A+  G     + LL  GADP     +G T + +      + G    ++  A K IQ   D     T+R +A+   G  PLH+A+      ++E LL         N  ++EG T          D    E    + ++  +KM +DA D  GRTPL  A  YG   + E LL  GA+P+L +S G++ L   A R  +D L      +         +   + LG TPL  A ++  + + E L+  GA     D  G T
Sbjct:  687 IDALDKLGQTPLHLALGTGKKKMVECLLRNGADPNIADAEGLTSLQL------ICG-TTYDDNSAEKFIQICDDM--QLTMRIDALDKLGRTPLHLALRNEKHKMVECLLRNG---TDPNIADAEGLTSLHLIALRGIDDDMMEWFLEIGDNMQLKMQIDALDKLGRTPLYTALAYGRRKIAETLLRRGANPNLANSEGLTYLHFIALRKIDDDLVEKFIKMCSDIQQTVQVNALNKLGRTPLHLALRKGKQKMVESLLRNGADPNIADEKGYT 948          
BLAST of mRNA_C-linearis_contig99.17188.1 vs. uniprot
Match: A0A6H5HY31_9HYME (Uncharacterized protein n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5HY31_9HYME)

HSP 1 Score: 71.6 bits (174), Expect = 3.520e-9
Identity = 84/309 (27.18%), Postives = 132/309 (42.72%), Query Frame = 2
Query:    2 TMQRLIQASLEGDVGRVTALVDNAVNPRELVDKGDDRGFR--ALHVAVMMGAPDCAKKLLEAGADPKAFTKDGATPIVMAAQGSGVAGHPELEEGGAAKCIQHLLDAGADQTLRDEAV--------GTVPLHVAVYRGGPGVLEALLAGPGGEVAANTKNSEGATXXXXXXXXXXD-SAPEALTLLREDCPVKMDVDAADDSGRTPLLGASHYG-HADVVERLLAAGADPSLRDSGGMSPLSAAAWRGKEDCLGALLDTDSGVATLEMASNLGATPLIFACQENHKSIAERLIAAGASLEANDLTGKTP 892
            T+ R+ +   + ++ R+ + + +  N    +D  D  G     LH+A+  G    A  LL+ GAD      +G TP+ +    + V  H           +  L  A  DQ  R+EAV        G  PLHVA+       +  LL G G    +   N  G T          D    E L  + ++  V+  +DA D+ G TPL   ++ G +    E LLA GADPSL ++ G +PL         + +  LL+ +     +++    G T L  A + +H+  AE L+  GA   A +  G+TP
Sbjct:  252 TLYRIFEKFSDVNLPRIVSEMIDKPNQPMPIDTRDKWGQHDTLLHLALRNGKKMTAALLLKRGADANLPNAEGETPLHIVCHRNAV--H-----------LAELFFASMDQ--RNEAVLLDAQNNRGDTPLHVALRHSTGRRMAELLLGKG--AVSTLVNEAGETLLHIVCKAARDVEMAEMLFRIYDERRVQAPLDARDNWGNTPLHNLAYAGRNVATCELLLARGADPSLANNVGRTPLHITCDGQDIELVRTLLNHER--VRVDVPDQEGNTALHLALERDHREAAESLLRRGADPNAANANGETP 541          
BLAST of mRNA_C-linearis_contig99.17188.1 vs. uniprot
Match: A0A6H5I0V7_9HYME (Uncharacterized protein n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5I0V7_9HYME)

HSP 1 Score: 71.6 bits (174), Expect = 4.330e-9
Identity = 76/289 (26.30%), Postives = 118/289 (40.83%), Query Frame = 2
Query:   38 DVGRVTALVDNAVNPRELVDKGDDRGFRALHVAVMMGAPDCAKKLLEAGADPKAFTKDGATPIVMAAQGSGVAGHPELEEGGAAKCIQHLLDAGADQTLRDEAVGTVPLHVAVYRGGPGVLEALLAGPGGEVAANTKNSEGATXXXXXXXXXXDSAP-----EALTLLREDCPVKMDVDAADDSGRTPLLGASHYGHADVVERLLAAGADPSLRDSGGMSPLSAAAWRGKEDCLGALL---------DTDSGVATLEMASNLGATPLIFACQENHKSIAERLIAAGASL 862
            D+  +       V  R  +D  D+RG+  LH A++       + LL  GADP    +DG +P+ + +         E+++  +AK +  +         RD+  G  PLH A +     +++ LL         N  N++G T          D+           +  E+   K+ VDA +  G TPL  A + G       LL+ GADP+L  + G +PL  A  R  E   GA +         + D  V  L+     G TPL +A      SI + L+  GA L
Sbjct:  675 DLAEIFCDASEKVGQRLRIDAQDERGWTPLHFALIRRNSRLVELLLRRGADPNLADEDGTSPLHLIS---------EMDDPDSAKILFEICGELVKVDARDK-FGCAPLHAAAFHSDAELMQLLLRNG---ADPNPANADGTTPLHLVNCIDDDADAAHFWRSFFEISEEEMRRKVQVDARNARGWTPLHLALYSGSEAATRLLLSRGADPNLATARGETPLHVACRR-SEFHRGAAMARSFLRISEEVDRPVE-LDARDRKGRTPLQWAVANLEPSIVDLLLERGADL 948          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig99.17188.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0H8_ECTSI1.680e-11960.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KW25_9PHAE3.170e-2367.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0L850_MAGMM6.570e-1328.70Ankyrin repeat-like protein n=1 Tax=Magnetococcus ... [more]
A0A6H5IPC4_9HYME4.870e-1227.68Uncharacterized protein n=1 Tax=Trichogramma brass... [more]
A0A6H5I8N0_9HYME4.430e-1028.01Uncharacterized protein n=1 Tax=Trichogramma brass... [more]
A0A7S0SR91_9CHLO6.100e-1041.94Hypothetical protein (Fragment) n=1 Tax=Mantoniell... [more]
A0A6H5IS62_9HYME7.440e-1026.44Uncharacterized protein n=1 Tax=Trichogramma brass... [more]
A0A6H5IRR4_9HYME2.050e-928.47Uncharacterized protein n=1 Tax=Trichogramma brass... [more]
A0A6H5HY31_9HYME3.520e-927.18Uncharacterized protein n=1 Tax=Trichogramma brass... [more]
A0A6H5I0V7_9HYME4.330e-926.30Uncharacterized protein n=1 Tax=Trichogramma brass... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig99contigC-linearis_contig99:448450..451699 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score373.6
Seed ortholog evalue1e-100
Seed eggNOG ortholog2880.D7G0H8
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-20_002370.1
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size2137
Cds size1101
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930853.204139-UTR-C-linearis_contig99:448449..4484531622930853.204139-UTR-C-linearis_contig99:448449..448453Chordaria linearis ClinC8C monoicousUTRC-linearis_contig99 448450..448453 +
1690881283.2737124-UTR-C-linearis_contig99:448449..4484531690881283.2737124-UTR-C-linearis_contig99:448449..448453Chordaria linearis ClinC8C monoicousUTRC-linearis_contig99 448450..448453 +
1622930853.3106718-UTR-C-linearis_contig99:450667..4516991622930853.3106718-UTR-C-linearis_contig99:450667..451699Chordaria linearis ClinC8C monoicousUTRC-linearis_contig99 450668..451699 +
1690881283.3372316-UTR-C-linearis_contig99:450667..4516991690881283.3372316-UTR-C-linearis_contig99:450667..451699Chordaria linearis ClinC8C monoicousUTRC-linearis_contig99 450668..451699 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930853.2210693-CDS-C-linearis_contig99:448453..4486181622930853.2210693-CDS-C-linearis_contig99:448453..448618Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 448454..448618 +
1690881283.2859638-CDS-C-linearis_contig99:448453..4486181690881283.2859638-CDS-C-linearis_contig99:448453..448618Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 448454..448618 +
1622930853.2396927-CDS-C-linearis_contig99:448960..4491341622930853.2396927-CDS-C-linearis_contig99:448960..449134Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 448961..449134 +
1690881283.2949364-CDS-C-linearis_contig99:448960..4491341690881283.2949364-CDS-C-linearis_contig99:448960..449134Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 448961..449134 +
1622930853.254868-CDS-C-linearis_contig99:449483..4497681622930853.254868-CDS-C-linearis_contig99:449483..449768Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 449484..449768 +
1690881283.3065577-CDS-C-linearis_contig99:449483..4497681690881283.3065577-CDS-C-linearis_contig99:449483..449768Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 449484..449768 +
1622930853.2673762-CDS-C-linearis_contig99:449960..4502081622930853.2673762-CDS-C-linearis_contig99:449960..450208Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 449961..450208 +
1690881283.316589-CDS-C-linearis_contig99:449960..4502081690881283.316589-CDS-C-linearis_contig99:449960..450208Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 449961..450208 +
1622930853.290369-CDS-C-linearis_contig99:450438..4506671622930853.290369-CDS-C-linearis_contig99:450438..450667Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 450439..450667 +
1690881283.3257954-CDS-C-linearis_contig99:450438..4506671690881283.3257954-CDS-C-linearis_contig99:450438..450667Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 450439..450667 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig99.17188.1prot_C-linearis_contig99.17188.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig99 448454..450667 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig99.17188.1

>prot_C-linearis_contig99.17188.1 ID=prot_C-linearis_contig99.17188.1|Name=mRNA_C-linearis_contig99.17188.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=367bp
MQRLIQASLEGDVGRVTALVDNAVNPRELVDKGDDRGFRALHVAVMMGAP
DCAKKLLEAGADPKAFTKDGATPIVMAAQGSGVAGHPELEEGGAAKCIQH
LLDAGADQTLRDEAVGTVPLHVAVYRGGPGVLEALLAGPGGEVAANTKNS
EGATPLHVACRKNGDSAPEALTLLREDCPVKMDVDAADDSGRTPLLGASH
YGHADVVERLLAAGADPSLRDSGGMSPLSAAAWRGKEDCLGALLDTDSGV
ATLEMASNLGATPLIFACQENHKSIAERLIAAGASLEANDLTGKTPYLTA
KIQNASACLEFLREKHGRPTPEEDSFDFWDATAAVFPKGSGSIKSGAGGR
MPSRAGTNPFSPNFVP*
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mRNA from alignment at C-linearis_contig99:448450..451699+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig99.17188.1 ID=mRNA_C-linearis_contig99.17188.1|Name=mRNA_C-linearis_contig99.17188.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3250bp|location=Sequence derived from alignment at C-linearis_contig99:448450..451699+ (Chordaria linearis ClinC8C monoicous)
GACCATGCAGCGGCTCATCCAAGCATCCTTGGAAGGAGATGTCGGGAGGG TCACTGCCCTCGTCGACAACGCCGTGAACCCGAGGGAACTGGTCGACAAA GGGGATGATCGCGGCTTCAGAGCCCTACACGTCGCTGTCATGATGGGTGC GCCGGATTGCGCAAAGAAGGTCAGTAAACCGTCCTCCTGGTGTGTAGTAC CGGTATTTATTTTTTTCTCGCCCATTAATGTTTTTTCATAGCCTTCCTCC TCCTCTTCACTACAACTAGCTAGGCTACCATCCGGGGTCACACAGGGGGG GATGTCTCCACCTACCTCCTGCGGTGTGTACCTTCCTGTTTCATTTTCTT GCGCGTTCTTCCTTGCCTCCCTTCCGTTCGACCTTGTGACAACGAGTATA CCTGTGTCTTGCCGTGATGTATCATACACTTCGAAGTATATGTGCTGCTG GCTGAATCTAAACCCATTTCGCACCGCATCGCACCCCTCTCCCCCAAAAC AACGTCGACAGCTCCTCGAGGCCGGAGCGGATCCTAAAGCTTTCACGAAA GACGGCGCCACCCCGATCGTCATGGCGGCCCAGGGGTCGGGCGTCGCGGG CCACCCCGAGCTGGAGGAGGGCGGCGCCGCCAAGTGCATCCAGCACCTCC TTGACGCCGGGGCTGACCAGACCTTGAGGGACGAGGTGAGTCGTTCACAT CACGGTGCTGGGCCACACTGGGAAAATATTGTTAGCCATTTCGAGCACTA ATATTCGAGGCGAGGCGAATGCCACGTTTTCGTTCTTGGTGGAGTCGGTT CCAAGGTTGCGGCGCTCTTGACGTGGGAATAGGCTATAAACTTTACACTT CCATTTATTCTTGCGCGCCATGAGGGGCTAAGTCAGGCGGTAGGTCAACG TTCGTTTTCCGTCATCATGTGGGTGCGCTCGTTCTTCGTGCTATGCGCTT CGCAGACCTGAAAAAAAGCTACAGTAGTACTGTTTGGACCCCCGTTGATG GCAAACCGCGTGGTGCACGGCACCTCCCTTTCAGGCGGTCGGCACGGTGC CGCTGCACGTGGCCGTCTACCGAGGGGGCCCAGGGGTGCTGGAGGCCCTG CTGGCAGGACCGGGAGGGGAGGTTGCCGCCAACACCAAGAACAGCGAGGG CGCCACGCCCCTCCACGTGGCCTGCAGAAAGAACGGAGACTCGGCTCCTG AGGCCCTGACCCTGCTCCGAGAGGACTGCCCCGTGAAGATGGACGTCGAC GCGGCAGATGACAGCGGGAGGACGCCTCTTCTCGGCGCTAGTCACTACGG CCACGCCGACGTAGTTGAGGTATTGTAACAAGGTTTATTCACATAGTTGT AAGTCGAACTGTGCATGTGCGACCACCACAGGGTACTAATCCACTGGGTA AACCTTGGATGGCGTTTTCAGTGTGCGTTACTAAGCTCCTCCTTTGTGGA CCTCCTTCGTGGGCCTCACTTTTGCCTTAAAACTTCTTTTTTTTCCTGTG CCGCATTGCAGCGCCTTCTGGCTGCCGGAGCGGACCCGTCTCTGCGAGAC AGCGGTGGCATGAGCCCCCTGTCAGCGGCAGCCTGGAGGGGCAAGGAGGA CTGCCTAGGCGCACTGCTTGACACCGACAGCGGTGTCGCGACCCTTGAGA TGGCCAGCAACCTGGGCGCCACGCCCCTCATCTTCGCCTGCCAGGAGAAC CACAAGAGCATCGCGGAGAGGCTCATCGCCGCCGGGGCGAGTCTCGAGGC CAATGACTTGTGAGTGCTCGTCGGGTCTTTTGTGCGTGTGTGCACGCGCG CGCGTGTTTTCTGTTGTTTCCTTTCGTTTGTGGAAGAGCAGGGCTCCCGT CCGCAGAGCAATACGTTTGAGTCTCTGTGCCTCCCTCTCTCGCCCGGATA CATGCATGGGGGAAACGGGCTCTTGTCGCCACGGTTTAGTTTAACTTGTT TTTCTCCTCCCCCACGCCGTCATGGAATCAATCATTTAGGACGGGCAAGA CACCGTATCTTACAGCCAAGATCCAGAACGCGTCGGCCTGCCTGGAGTTC CTCCGGGAGAAGCACGGCCGCCCCACCCCAGAGGAGGATAGCTTCGACTT CTGGGACGCCACCGCCGCCGTCTTTCCCAAGGGTAGTGGCAGCATCAAGA GTGGTGCCGGTGGCCGCATGCCCTCCAGGGCCGGAACTAACCCTTTCAGC CCAAACTTCGTCCCGTAGCCAAGGTACACTCCGACCCCTAGCTGCACCGT CCCAATCGGTAGCTAGCCAGGACGAAGCTTAGCGCTGTGCGTACGCTCGA AGGCGGAGTTTGACTCAGTAGGCCAGGCGTGTATGCAGCCGTGCGTCGTT CGGCTCCTTGGCTTCTTCGTGGCTTCCTCCGTTCTGTGTCTCGGAGTGCG ATTTCATCAAGGTCTCCAACTCCTTGATTCGTGCACTTCCGAGAGAGAGA GAAAAAGGATCCCAAAAAAGATGCTGGAGCTTCCAGCGATGGGTCCTTTC GGCGTCTTCAAACCCATCTGCCAGAAGGAGCCGCTCGAGTGATTGCTGCC CGGGAAGGGTATCCTTCATCAGCCCAACCTCGGAAACGCCCGGAGCCTCG GTGCCTGGTTCGCGAGCTCGGTAGAAAGGGGAGCGGCGGTGGACGGATGG AGCTACAAATATCCTACGTCGTACCCCGTGCTCCAAAGGAGCGTGCTAAC GGTCCCTCCTGCGTATCATATGCCCCCCAGTCCTGTCTTCTTCGATTGTG AGGGACAGCATCACCATTTTACGCCTGGGGCTCTCCATCGCCACGTACCT GCTGCGGTCACCGTAGGTAGCAGTTGGCCGCTCCACACAACGAAGTGGCG AGTCATGCGTCTTCTGGATTTGCATTGCATTGCCTTTTGGGTGCTTTATC GATTATCGAAAAAAAAACGCCGAATTCGACGAAGGGCTCAGTCGAAAGAG CGGTTGTCCAAACGCGTAATGGTCACTGCTGTGCCAGTAGATGAACCTCC ACACTATAGTAGGTGTGTGTTCTCAGATTGTAGGTGACCTTGGCGCGGGC GAAACGCCACGGCGACCCTGAGTGAGTTGTCATGTTCCTCACCCTGCTGT GCGTGTTCTTCTCTTGGGAATGAAATACAGCGCGTCAGAAATGGAACCTC CCGAAGAAAAGTTGAAACGGCCGAGGGTGTTCATCTTCAACAGCATATAT AGACTACCAGTATTATGAAATGATGATGCTTTTTGCTTTTTGTACCTGAC
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Coding sequence (CDS) from alignment at C-linearis_contig99:448450..451699+

>mRNA_C-linearis_contig99.17188.1 ID=mRNA_C-linearis_contig99.17188.1|Name=mRNA_C-linearis_contig99.17188.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2202bp|location=Sequence derived from alignment at C-linearis_contig99:448450..451699+ (Chordaria linearis ClinC8C monoicous)
ATGCAGCGGCTCATCCAAGCATCCTTGGAAGGAGATGTCGGGAGGGTCAC
TGCCCTCGTCGACAACGCCGTGAACCCGAGGGAACTGGTCGACAAAGGGG
ATGATCGCGGCTTCAGAGCCCTACACGTCGCTGTCATGATGGGTGCGCCG
GATTGCGCAAAGAAGATGCAGCGGCTCATCCAAGCATCCTTGGAAGGAGA
TGTCGGGAGGGTCACTGCCCTCGTCGACAACGCCGTGAACCCGAGGGAAC
TGGTCGACAAAGGGGATGATCGCGGCTTCAGAGCCCTACACGTCGCTGTC
ATGATGGGTGCGCCGGATTGCGCAAAGAAGCTCCTCGAGGCCGGAGCGGA
TCCTAAAGCTTTCACGAAAGACGGCGCCACCCCGATCGTCATGGCGGCCC
AGGGGTCGGGCGTCGCGGGCCACCCCGAGCTGGAGGAGGGCGGCGCCGCC
AAGTGCATCCAGCACCTCCTTGACGCCGGGGCTGACCAGACCTTGAGGGA
CGAGCTCCTCGAGGCCGGAGCGGATCCTAAAGCTTTCACGAAAGACGGCG
CCACCCCGATCGTCATGGCGGCCCAGGGGTCGGGCGTCGCGGGCCACCCC
GAGCTGGAGGAGGGCGGCGCCGCCAAGTGCATCCAGCACCTCCTTGACGC
CGGGGCTGACCAGACCTTGAGGGACGAGGCGGTCGGCACGGTGCCGCTGC
ACGTGGCCGTCTACCGAGGGGGCCCAGGGGTGCTGGAGGCCCTGCTGGCA
GGACCGGGAGGGGAGGTTGCCGCCAACACCAAGAACAGCGAGGGCGCCAC
GCCCCTCCACGTGGCCTGCAGAAAGAACGGAGACTCGGCTCCTGAGGCCC
TGACCCTGCTCCGAGAGGACTGCCCCGTGAAGATGGACGTCGACGCGGCA
GATGACAGCGGGAGGACGCCTCTTCTCGGCGCTAGTCACTACGGCCACGC
CGACGTAGTTGAGGCGGTCGGCACGGTGCCGCTGCACGTGGCCGTCTACC
GAGGGGGCCCAGGGGTGCTGGAGGCCCTGCTGGCAGGACCGGGAGGGGAG
GTTGCCGCCAACACCAAGAACAGCGAGGGCGCCACGCCCCTCCACGTGGC
CTGCAGAAAGAACGGAGACTCGGCTCCTGAGGCCCTGACCCTGCTCCGAG
AGGACTGCCCCGTGAAGATGGACGTCGACGCGGCAGATGACAGCGGGAGG
ACGCCTCTTCTCGGCGCTAGTCACTACGGCCACGCCGACGTAGTTGAGCG
CCTTCTGGCTGCCGGAGCGGACCCGTCTCTGCGAGACAGCGGTGGCATGA
GCCCCCTGTCAGCGGCAGCCTGGAGGGGCAAGGAGGACTGCCTAGGCGCA
CTGCTTGACACCGACAGCGGTGTCGCGACCCTTGAGATGGCCAGCAACCT
GGGCGCCACGCCCCTCATCTTCGCCTGCCAGGAGAACCACAAGAGCATCG
CGGAGAGGCTCATCGCCGCCGGGGCGAGTCTCGAGGCCAATGACTTCGCC
TTCTGGCTGCCGGAGCGGACCCGTCTCTGCGAGACAGCGGTGGCATGAGC
CCCCTGTCAGCGGCAGCCTGGAGGGGCAAGGAGGACTGCCTAGGCGCACT
GCTTGACACCGACAGCGGTGTCGCGACCCTTGAGATGGCCAGCAACCTGG
GCGCCACGCCCCTCATCTTCGCCTGCCAGGAGAACCACAAGAGCATCGCG
GAGAGGCTCATCGCCGCCGGGGCGAGTCTCGAGGCCAATGACTTGACGGG
CAAGACACCGTATCTTACAGCCAAGATCCAGAACGCGTCGGCCTGCCTGG
AGTTCCTCCGGGAGAAGCACGGCCGCCCCACCCCAGAGGAGGATAGCTTC
GACTTCTGGGACGCCACCGCCGCCGTCTTTCCCAAGGGTAGTGGCAGCAT
CAAGAGTGGTGCCGGTGGCCGCATGCCCTCCAGGGCCGGAACTAACCCTT
TCAGCCCAAACTTCGTCCCGTAGGACGGGCAAGACACCGTATCTTACAGC
CAAGATCCAGAACGCGTCGGCCTGCCTGGAGTTCCTCCGGGAGAAGCACG
GCCGCCCCACCCCAGAGGAGGATAGCTTCGACTTCTGGGACGCCACCGCC
GCCGTCTTTCCCAAGGGTAGTGGCAGCATCAAGAGTGGTGCCGGTGGCCG
CATGCCCTCCAGGGCCGGAACTAACCCTTTCAGCCCAAACTTCGTCCCGT
AG
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