mRNA_C-linearis_contig99.17185.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig99.17185.1
Unique NamemRNA_C-linearis_contig99.17185.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig99.17185.1 vs. uniprot
Match: A0A6H5KU27_9PHAE (t-SNARE coiled-coil homology domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KU27_9PHAE)

HSP 1 Score: 509 bits (1310), Expect = 2.140e-169
Identity = 330/521 (63.34%), Postives = 348/521 (66.79%), Query Frame = 1 
Query:  124 MTMTDRTEEFRGAVNVFRPTVTVVKDSSEAAATRAQSDLGYRKTSEFLQLASSVAVGFEGTSKLIGRLKKLVGRKGFSNNPAAEINEVMKLFEEDMAGLQRDISSLQRHADGKTRGSPPINSQRQMHCAFIVTTLRKSAQEHTKAFRDALLLRAAVEKQQNERQRKFSHSRGVAPATQLDYPLFGNGGASGPRRRGRPXXXXXXXXXXXXXXXPLDGDDEDNKGHKTSGRVAGMGLATSTAAAVVSSLPFPSGRPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXSCWPQKTG-PPPWP------GXXXXXXXXXXXSGYSNGAAGA------PPGVLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGG--------APPGVPLHPPEPPRASSGATGLRKRPGREDGCDGDEEARRAAWQVQVQEDSKARVDESHKVEKMIGELGQMFSRFSTMVAAQEEVVMHIEDDVEAAHAFAEEGQAHLAKYYQIMSGNRGIIIKVFIMLILFIWVFLGLMR 1623
            MTMTDRT+EF GAV+ FRPTVT V +S EAA  RAQ+DLGYRKTSEFLQLA+SVAVGFEGTS+LIGRLKKLVGRKGFSNNPAAEI++VMKLFE DMAGLQ+DISSLQR+ADG TRGSPP NSQRQMHCAFIVTTLR+SAQEHTKAFRDAL+LRAAVEKQQNERQRKFSHSRGVAPATQLDYPLFG+   SG       XXXXX      XXXX       DNKGHK   R  G            S LPFPSG  G                            S WPQK+  P PW       G            GY   A GA      P     XXXX                             GG        APPG P    E  R    ATGLRKRPGREDG D +EE+RRAAWQVQVQEDSK RVDESHKVEKMIG+LG MFSRFSTMVAAQEEVVMHIEDDVEAAHAFAEEGQAHLAKYYQI SGNRGIIIKVFIMLI+ IWVFLGLMR
Sbjct:    1 MTMTDRTKEFHGAVSAFRPTVTAVNNSGEAALIRAQTDLGYRKTSEFLQLAASVAVGFEGTSRLIGRLKKLVGRKGFSNNPAAEISDVMKLFEGDMAGLQKDISSLQRYADGGTRGSPPANSQRQMHCAFIVTTLRRSAQEHTKAFRDALMLRAAVEKQQNERQRKFSHSRGVAPATQLDYPLFGS---SGXXXXXXXXXXXXTANLPSXXXXXXXXXXXDNKGHKHGPRKGGK---------AASVLPFPSGNGGTRAGGGTGG-------------------SSWPQKSAVPAPWSAEGGRNGNGNNCSTGVGKGGYD--AVGAMPRATEPAAXXXXXXXRTDSNGGFRAGPHTAPTFGSANGYVPPAAGGGSGRAHAAAPPGFPPLRTEASRGGGRATGLRKRPGREDGGDAEEESRRAAWQVQVQEDSKTRVDESHKVEKMIGDLGHMFSRFSTMVAAQEEVVMHIEDDVEAAHAFAEEGQAHLAKYYQITSGNRGIIIKVFIMLIVCIWVFLGLMR 488
[Close]
BLAST of mRNA_C-linearis_contig99.17185.1 vs. uniprot
Match: A0A835ZFW2_9STRA (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFW2_9STRA)

HSP 1 Score: 106 bits (264), Expect = 5.770e-24
Identity = 51/72 (70.83%), Postives = 61/72 (84.72%), Query Frame = 1 
Query: 1393 MIGELGQMFSRFSTMVAAQEEVVMHIEDDVEAAHAFAEEGQAHLAKYYQIMSGNRGIIIKVFIMLILFIWVF 1608
            MIGELG MFS+FS +VAAQEE V+HIEDDVE AH FA +G AHL++YYQ +SGNRGII+KV I+L  F+WVF
Sbjct:    1 MIGELGHMFSKFSALVAAQEETVVHIEDDVEMAHGFAVDGHAHLSRYYQTISGNRGIIVKVLILLAFFVWVF 72
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BLAST of mRNA_C-linearis_contig99.17185.1 vs. uniprot
Match: A0A7S2XXW7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXW7_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 6.720e-16
Identity = 44/96 (45.83%), Postives = 64/96 (66.67%), Query Frame = 1 
Query: 1336 VQVQEDSKARVDESHKVEKMIGELGQMFSRFSTMVAAQEEVVMHIEDDVEAAHAFAEEGQAHLAKYYQIMSGNRGIIIKVFIMLILFIWVFLGLMR 1623
             ++Q  SK RV+E+  +E  I E   MFS+ +TMVA Q E+V  I+DD+E A      G   L +YY I+SGNRG+IIK+FI L++FI++F+ L +
Sbjct:   10 AELQTSSKQRVEEARSIEATISEFATMFSKMATMVAQQGELVTRIDDDMELALGNVSAGHTELTRYYSIISGNRGLIIKIFITLMVFIFLFVVLFK 105
[Close]
BLAST of mRNA_C-linearis_contig99.17185.1 vs. uniprot
Match: I2CQ48_NANGC (t-SNARE coiled-coil homology domain-containing protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQ48_NANGC)

HSP 1 Score: 80.9 bits (198), Expect = 1.510e-14
Identity = 45/89 (50.56%), Postives = 63/89 (70.79%), Query Frame = 1 
Query: 1345 QEDSKARVDESHKVEKMIGELGQMFSRFSTMVAAQEEVVMHIEDDVEAAHAFAEEGQAHLAKYYQIMSGNRGIIIKVFIMLILFIWVFL 1611
            Q D+ +R+ E+  VEK I ELGQ FSR + +VAAQ EVVM I+DD+EAA    ++G A +  Y +I+ GNR +I KVF +L++FI VF+
Sbjct:   25 QRDTASRLREARAVEKAIVELGQTFSRMAGLVAAQGEVVMRIDDDMEAALEDVQKGHAEMVNYLRIVKGNRAVIFKVFALLLVFIVVFV 113
[Close]
BLAST of mRNA_C-linearis_contig99.17185.1 vs. uniprot
Match: F0Y6L6_AURAN (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y6L6_AURAN)

HSP 1 Score: 78.6 bits (192), Expect = 5.100e-14
Identity = 41/90 (45.56%), Postives = 63/90 (70.00%), Query Frame = 1 
Query: 1342 VQEDSKARVDESHKVEKMIGELGQMFSRFSTMVAAQEEVVMHIEDDVEAAHAFAEEGQAHLAKYYQIMSGNRGIIIKVFIMLILFIWVFL 1611
            +++ S+ R+D +H +EK IG+LG++FSRFS++VA Q EVV  ++DDVE A    E G A L K  +++ GNR + +KVF +LI  I +F+
Sbjct:    2 LEQTSRRRLDTAHNIEKEIGKLGEVFSRFSSLVAQQAEVVERLDDDVEGALGEVEMGHAELLKAQEVLRGNRALFLKVFAVLIALIVLFV 91
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BLAST of mRNA_C-linearis_contig99.17185.1 vs. uniprot
Match: A0A7S3H3X9_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H3X9_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 2.630e-12
Identity = 39/84 (46.43%), Postives = 59/84 (70.24%), Query Frame = 1 
Query: 1360 ARVDESHKVEKMIGELGQMFSRFSTMVAAQEEVVMHIEDDVEAAHAFAEEGQAHLAKYYQIMSGNRGIIIKVFIMLILFIWVFL 1611
            +R +    V+K IGEL QMFS+ + +V AQEE++  I+ D+++     +EGQ HL KY+Q +S NRG+IIKVF++LI F+  F+
Sbjct:  216 SRAEAVQNVQKTIGELAQMFSKMAVLVTAQEEMIQRIDSDLDSTITNVDEGQQHLLKYFQYISSNRGLIIKVFLILIFFVVFFV 299
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BLAST of mRNA_C-linearis_contig99.17185.1 vs. uniprot
Match: A0A485LIS1_9STRA (Aste57867_21905 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LIS1_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 2.630e-12
Identity = 50/134 (37.31%), Postives = 87/134 (64.93%), Query Frame = 1 
Query: 1222 LHPPEPPRASSGATGLRKRPGREDGCDGDEEARRAAWQ-VQVQEDSKARVDESHKVEKMIGELGQMFSRFSTMVAAQEEVVMHIEDDVEAAHAFAEEGQAHLAKYYQIMSGNRGIIIKVFIMLILFIWVFLGLM 1620
            LHP +P +    A G+R+RP   +G  G   A++   Q +     +++R++++  VE MIGE+G M+SR + ++A QEE++  IEDD+  AH+  E G   L KY+  +S NR +I+K+F++L++FI++FL ++
Sbjct:  197 LHPVQP-QGPDAAAGMRRRPFM-NGATGSSYAQQQQQQNLMRHRTAQSRLNDAQNVEAMIGEIGGMYSRMTGLLANQEEMLGRIEDDMTTAHSNVEGGYEELMKYFSTVSSNRSLILKIFLVLLVFIYLFLVVL 328
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BLAST of mRNA_C-linearis_contig99.17185.1 vs. uniprot
Match: A0A4D9CWV4_9STRA (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CWV4_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 1.760e-11
Identity = 43/89 (48.31%), Postives = 62/89 (69.66%), Query Frame = 1 
Query: 1345 QEDSKARVDESHKVEKMIGELGQMFSRFSTMVAAQEEVVMHIEDDVEAAHAFAEEGQAHLAKYYQIMSGNRGIIIKVFIMLILFIWVFL 1611
            Q D+ +R+ E+  VEK I ELGQ FSR + +VAAQ EVV+ I+DD+EAA    ++G   +  Y +I+ GNR +I KVF +L++FI VF+
Sbjct:  278 QRDTASRLREARAVEKAIVELGQTFSRMAGLVAAQGEVVVRIDDDMEAALEDVQKGHVEMVNYLRIVKGNRAVIFKVFALLLVFIVVFV 366
[Close]
BLAST of mRNA_C-linearis_contig99.17185.1 vs. uniprot
Match: A0A6G0WSE7_9STRA (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WSE7_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 2.340e-11
Identity = 37/86 (43.02%), Postives = 63/86 (73.26%), Query Frame = 1 
Query: 1354 SKARVDESHKVEKMIGELGQMFSRFSTMVAAQEEVVMHIEDDVEAAHAFAEEGQAHLAKYYQIMSGNRGIIIKVFIMLILFIWVFL 1611
            ++AR++++  +E  I E+G M+SR + ++A+QEE++  IEDD+  AHA  E G   L KY+  +S NR +I+K+F++L+LFI++FL
Sbjct:  224 AQARLNDAQHMEATISEIGGMYSRMTGLLASQEEMLGRIEDDMTTAHANVESGYEELMKYFSTVSSNRSLILKIFLILLLFIYLFL 309
[Close]
BLAST of mRNA_C-linearis_contig99.17185.1 vs. uniprot
Match: A0A1V9YVH0_9STRA (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YVH0_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 2.430e-10
Identity = 37/86 (43.02%), Postives = 62/86 (72.09%), Query Frame = 1 
Query: 1354 SKARVDESHKVEKMIGELGQMFSRFSTMVAAQEEVVMHIEDDVEAAHAFAEEGQAHLAKYYQIMSGNRGIIIKVFIMLILFIWVFL 1611
            ++AR++++ ++E  I E+G M SR S+++A+Q EV+  I+DD+  A    E G   L KY+  MSGNR +I+K+FI+L++FI++FL
Sbjct:  223 AQARLNDALQMESTIAEIGSMHSRMSSLIASQGEVLERIDDDMTLAQDNVEAGHNELLKYFATMSGNRSLILKIFIILLVFIYLFL 308
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig99.17185.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KU27_9PHAE2.140e-16963.34t-SNARE coiled-coil homology domain-containing pro... [more]
A0A835ZFW2_9STRA5.770e-2470.83t-SNARE coiled-coil homology domain-containing pro... [more]
A0A7S2XXW7_9STRA6.720e-1645.83Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
I2CQ48_NANGC1.510e-1450.56t-SNARE coiled-coil homology domain-containing pro... [more]
F0Y6L6_AURAN5.100e-1445.56t-SNARE coiled-coil homology domain-containing pro... [more]
A0A7S3H3X9_9STRA2.630e-1246.43Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A485LIS1_9STRA2.630e-1237.31Aste57867_21905 protein n=1 Tax=Aphanomyces stella... [more]
A0A4D9CWV4_9STRA1.760e-1148.31t-SNARE coiled-coil homology domain-containing pro... [more]
A0A6G0WSE7_9STRA2.340e-1143.02t-SNARE coiled-coil homology domain-containing pro... [more]
A0A1V9YVH0_9STRA2.430e-1043.02t-SNARE coiled-coil homology domain-containing pro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig99contigC-linearis_contig99:415695..421134 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score528.1
Seed ortholog evalue4.5e-147
Seed eggNOG ortholog2880.D8LR19
Preferred nameSTX5
KEGG koko:K08490
KEGG Pathwayko04130,map04130
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000139,GO:0000149,GO:0000278,GO:0000280,GO:0000281,GO:0000902,GO:0000910,GO:0001505,GO:0002164,GO:0002376,GO:0002520,GO:0002790,GO:0003674,GO:0005484,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005793,GO:0005794,GO:0005798,GO:0005801,GO:0005886,GO:0006810,GO:0006836,GO:0006873,GO:0006875,GO:0006878,GO:0006886,GO:0006887,GO:0006888,GO:0006891,GO:0006900,GO:0006901,GO:0006903,GO:0006904,GO:0006906,GO:0006996,GO:0007030,GO:0007049,GO:0007112,GO:0007140,GO:0007154,GO:0007267,GO:0007268,GO:0007269,GO:0007275,GO:0007276,GO:0007283,GO:0007346,GO:0008104,GO:0008150,GO:0008283,GO:0008361,GO:0009306,GO:0009653,GO:0009791,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010256,GO:0010604,GO:0012505,GO:0012506,GO:0012507,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016079,GO:0016081,GO:0016192,GO:0016197,GO:0016482,GO:0017156,GO:0019222,GO:0019725,GO:0019953,GO:0022402,GO:0022406,GO:0022411,GO:0022412,GO:0022414,GO:0022607,GO:0023052,GO:0023061,GO:0030003,GO:0030097,GO:0030133,GO:0030134,GO:0030135,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0031090,GO:0031201,GO:0031224,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0032504,GO:0032535,GO:0032940,GO:0032989,GO:0032991,GO:0033036,GO:0033043,GO:0033116,GO:0033206,GO:0034498,GO:0034613,GO:0035166,GO:0035167,GO:0042147,GO:0042175,GO:0042176,GO:0042592,GO:0042802,GO:0042803,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045055,GO:0045184,GO:0045732,GO:0045786,GO:0045930,GO:0046903,GO:0046907,GO:0046916,GO:0046983,GO:0047485,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0048232,GO:0048278,GO:0048280,GO:0048284,GO:0048285,GO:0048308,GO:0048313,GO:0048489,GO:0048513,GO:0048518,GO:0048519,GO:0048523,GO:0048534,GO:0048542,GO:0048569,GO:0048609,GO:0048731,GO:0048732,GO:0048856,GO:0048869,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0051128,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051301,GO:0051321,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051704,GO:0051726,GO:0055065,GO:0055070,GO:0055076,GO:0055080,GO:0055082,GO:0060255,GO:0060305,GO:0061024,GO:0061025,GO:0061640,GO:0065003,GO:0065007,GO:0065008,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0080090,GO:0090066,GO:0090114,GO:0090166,GO:0090174,GO:0097479,GO:0097480,GO:0097708,GO:0098588,GO:0098771,GO:0098791,GO:0098796,GO:0098805,GO:0098827,GO:0098916,GO:0099003,GO:0099504,GO:0099536,GO:0099537,GO:0099643,GO:0140013,GO:0140029,GO:0140056,GO:1903008,GO:1903046,GO:1903047,GO:1903358
EggNOG free text desc.vesicle docking
EggNOG OGsKOG0812@1,KOG0812@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons8
Model size2577
Cds size1503
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig99.17185.1prot_C-linearis_contig99.17185.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig99 416692..421011 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930852.393124-UTR-C-linearis_contig99:415694..4160621622930852.393124-UTR-C-linearis_contig99:415694..416062Chordaria linearis ClinC8C monoicousUTRC-linearis_contig99 415695..416062 -
1690881282.8271663-UTR-C-linearis_contig99:415694..4160621690881282.8271663-UTR-C-linearis_contig99:415694..416062Chordaria linearis ClinC8C monoicousUTRC-linearis_contig99 415695..416062 -
1622930852.4109027-UTR-C-linearis_contig99:416108..4166911622930852.4109027-UTR-C-linearis_contig99:416108..416691Chordaria linearis ClinC8C monoicousUTRC-linearis_contig99 416109..416691 -
1690881282.8389137-UTR-C-linearis_contig99:416108..4166911690881282.8389137-UTR-C-linearis_contig99:416108..416691Chordaria linearis ClinC8C monoicousUTRC-linearis_contig99 416109..416691 -
1622930852.5624223-UTR-C-linearis_contig99:421011..4211341622930852.5624223-UTR-C-linearis_contig99:421011..421134Chordaria linearis ClinC8C monoicousUTRC-linearis_contig99 421012..421134 -
1690881282.9114292-UTR-C-linearis_contig99:421011..4211341690881282.9114292-UTR-C-linearis_contig99:421011..421134Chordaria linearis ClinC8C monoicousUTRC-linearis_contig99 421012..421134 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930852.4301915-CDS-C-linearis_contig99:416691..4167881622930852.4301915-CDS-C-linearis_contig99:416691..416788Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 416692..416788 -
1690881282.8480046-CDS-C-linearis_contig99:416691..4167881690881282.8480046-CDS-C-linearis_contig99:416691..416788Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 416692..416788 -
1622930852.4509337-CDS-C-linearis_contig99:417214..4173601622930852.4509337-CDS-C-linearis_contig99:417214..417360Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 417215..417360 -
1690881282.8587928-CDS-C-linearis_contig99:417214..4173601690881282.8587928-CDS-C-linearis_contig99:417214..417360Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 417215..417360 -
1622930852.4713488-CDS-C-linearis_contig99:417784..4178851622930852.4713488-CDS-C-linearis_contig99:417784..417885Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 417785..417885 -
1690881282.8671265-CDS-C-linearis_contig99:417784..4178851690881282.8671265-CDS-C-linearis_contig99:417784..417885Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 417785..417885 -
1622930852.4864142-CDS-C-linearis_contig99:418351..4190451622930852.4864142-CDS-C-linearis_contig99:418351..419045Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 418352..419045 -
1690881282.8753345-CDS-C-linearis_contig99:418351..4190451690881282.8753345-CDS-C-linearis_contig99:418351..419045Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 418352..419045 -
1622930852.5037622-CDS-C-linearis_contig99:419551..4196931622930852.5037622-CDS-C-linearis_contig99:419551..419693Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 419552..419693 -
1690881282.8834662-CDS-C-linearis_contig99:419551..4196931690881282.8834662-CDS-C-linearis_contig99:419551..419693Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 419552..419693 -
1622930852.52387-CDS-C-linearis_contig99:419983..4201141622930852.52387-CDS-C-linearis_contig99:419983..420114Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 419984..420114 -
1690881282.8923154-CDS-C-linearis_contig99:419983..4201141690881282.8923154-CDS-C-linearis_contig99:419983..420114Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 419984..420114 -
1622930852.5437758-CDS-C-linearis_contig99:420819..4210111622930852.5437758-CDS-C-linearis_contig99:420819..421011Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 420820..421011 -
1690881282.9009204-CDS-C-linearis_contig99:420819..4210111690881282.9009204-CDS-C-linearis_contig99:420819..421011Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 420820..421011 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig99.17185.1

>prot_C-linearis_contig99.17185.1 ID=prot_C-linearis_contig99.17185.1|Name=mRNA_C-linearis_contig99.17185.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=501bp
MTMTDRTEEFRGAVNVFRPTVTVVKDSSEAAATRAQSDLGYRKTSEFLQL
ASSVAVGFEGTSKLIGRLKKLVGRKGFSNNPAAEINEVMKLFEEDMAGLQ
RDISSLQRHADGKTRGSPPINSQRQMHCAFIVTTLRKSAQEHTKAFRDAL
LLRAAVEKQQNERQRKFSHSRGVAPATQLDYPLFGNGGASGPRRRGRPAA
SPPPPPPAAAAAAPLDGDDEDNKGHKTSGRVAGMGLATSTAAAVVSSLPF
PSGRPGGGGGVRRSGEGVMGGGGGGGGSGGGQGGSCWPQKTGPPPWPGGG
YNGGAGGGGSGYSNGAAGAPPGVLGAGGAEYGRGAGATSAPAHSNGGGFS
GHGRGYGHGGAPPGVPLHPPEPPRASSGATGLRKRPGREDGCDGDEEARR
AAWQVQVQEDSKARVDESHKVEKMIGELGQMFSRFSTMVAAQEEVVMHIE
DDVEAAHAFAEEGQAHLAKYYQIMSGNRGIIIKVFIMLILFIWVFLGLMR
*
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mRNA from alignment at C-linearis_contig99:415695..421134-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig99.17185.1 ID=mRNA_C-linearis_contig99.17185.1|Name=mRNA_C-linearis_contig99.17185.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5440bp|location=Sequence derived from alignment at C-linearis_contig99:415695..421134- (Chordaria linearis ClinC8C monoicous)
AAATCATCGATAACATCGAGAGAGGCCTCTTCCCTGCAAAACCGGGGGGT
TGTCCAGCGCTTAGATTTGCGCTGTGCACGTTCAGTGTATGGTGTCGCCA
ACACTCTCATCCGGCGGTCGACGATGACGATGACAGACCGGACGGAAGAG
TTCCGCGGGGCGGTGAACGTCTTCCGCCCCACGGTGACGGTGGTGAAGGA
CAGCAGCGAGGCGGCGGCGACCAGGGCGCAGTCGGACCTCGGGTATCGGA
AGACGTCGGAGTTTCTCCAGCTTGCGTCCAGCGTGGCTGTCGGCTTCGAG
GGCACGTCCAAGCTGGTGCGTGGGGGGTCGATGGGGTGATGTTGGTTCGA
AGTAAGGTGTGGATAGGCAAGGTGTTTTGTGGTGTTGCTGGTGGTGTGGT
TGATGCGCAGGAGAGGGAGGGCAAAAATCGCCTGGTTGTGTTGTGCTTCC
TCTGTCAGATGAAGTCTCGAGACTACATCTGTCTTTGGCGGTACGATGGG
TACTGCTGTAGCGTCAAAAGCAAGGCCAACCAGGTTTTGCTTGTCTTGTG
CGCGGCCTGGTTCTTGTTGTTCTGCTGTGTGAATCGCTGTGCACAGCACT
ACTGCTACTTGTATAAGCAAATTCTGCTCGATGCACAATTCATACTCGAC
AGAAATGTAATTGTTTCACGACCAAACAACGGCACGAGCACATGAGTTTC
GCGCGGCTTCGCAGGCCTGCATCCCTCCGTGCACTCAACGCGCACAGAAT
CATAATCACCCGATGCAAAGAAATGAAAGCTGGTGTGGGATGGGATGCAA
CCTCTATATTCCAAGCGCAAAAACTTTGATTTATAAAAAACCGAGCGGTC
TCTTTTCGTGGAACGGTATCGACCAACGTTTGCGGTGTTCCAGTCGCCAC
TGCTGTACGTGCATACTTAGTGCCCCATGTGGCTTGCACGTACAGCGGTA
TATTCGACGAGGCCCCTATCCACCAGACGATTTTAAGTGTTAAATGCCTT
CCACGAAATGTGCTGGTCAGATCGGGCGGCTCAAGAAGCTGGTGGGGCGA
AAGGGTTTCAGCAACAACCCCGCGGCCGAGATAAACGAAGTCATGAAGCT
CTTCGAGGAGGACATGGCCGGCTTACAGAGGGATATATCCTCGCTGCAGA
GGTGTGTGTGGTGTATATAATCCTAACAGACGTGACTCGTTTGTGAGAGT
ATTGAGCCCTTGCTTCGTCTCTCGGTTCAGTTTTGCGGTTGTGGAGAGCG
AGTGGCCCGCTACCGCTTGTCCTGCAGCCCGGTCACCACTAGCTTTCGCT
GCCCACAGGCTCATGCAAAAGAGGGCAGGGTCGCATCTTCCACTACATTT
TCGACGATGTAGACACCAGCCTTAATAGAAGACACATTTCAGTGTACAAA
ATTCGTTCTTTCTTCCGAAATGGAACGAAACTGAAACACAGGCATGCGGA
CGGCAAGACCAGGGGGAGCCCGCCGATCAACAGCCAGCGGCAGATGCACT
GCGCGTTCATCGTTACGACGCTGCGGAAGAGCGCGCAGGAGCACACCAAG
GCCTTCCGGGACGCGCTATTGCTGCGCGCAGCAGTGAGTATGAGTTACCG
AGACGTAGCTGCCGCCGCAGCAGCAGCAGCAGTAGCAGCACATTTTGTGG
ACGTATCGTGCTTGCCATGCAGCAGTATCCGAGTTGTTGGAGAGCGGGGG
GGTACCATTGCGTCACGGGGGGATTCTGCACGTGGTGTCTCGCCGTGTTT
TGTGGTGTTGCCTCTCAAACGGGACGAGGCGACACTGCCAAAAAATATAC
CTTATCCTGGGCTCGTTTGCTTTTCGCCGACCTACCTCACCGGGCATGGA
TCCAATCCAATCCAATCCAATCCAATCCTTTCCGCACGTACACTAAGGCT
GCTGAATGCTCCAGTGCAGATCTGCACCTGTAGCGGCGGCCGTATGCTGC
ATGCATCGTAGTGCATATTAGAGCAGAAAAACAGCACACCAGCGTACATG
TAGGGCCGCGACAAAAAAAAAGTCATTATCTGAAACAAAATACAACAAAG
TACCCGACCGACCGACCGATAACTATGCGCATCATGTAGGTGGAGAAGCA
GCAAAACGAACGGCAGCGCAAGTTCTCCCACTCCCGTGGCGTGGCTCCCG
CGACCCAGCTAGACTACCCGCTCTTCGGCAACGGTGGCGCCAGCGGGCCG
CGACGCCGGGGCCGCCCGGCCGCCTCTCCTCCCCCACCCCCGCCCGCCGC
CGCCGCCGCGGCCCCCCTGGACGGCGACGACGAAGACAACAAGGGGCACA
AGACGAGCGGAAGAGTTGCGGGGATGGGGTTGGCTACTTCGACCGCCGCG
GCCGTAGTTTCATCCTTGCCGTTCCCTTCCGGGAGGCCGGGGGGAGGGGG
AGGGGTGAGAAGGAGCGGCGAGGGCGTGATGGGTGGCGGCGGCGGCGGTG
GCGGCAGCGGCGGTGGTCAGGGTGGGTCTTGCTGGCCTCAGAAAACCGGG
CCGCCCCCATGGCCAGGGGGGGGTTACAATGGCGGTGCCGGCGGGGGTGG
TTCCGGCTACAGCAATGGTGCGGCTGGGGCGCCGCCGGGTGTCTTGGGAG
CAGGAGGGGCAGAGTACGGGCGTGGTGCTGGGGCGACTTCAGCGCCGGCT
CACAGTAATGGGGGCGGTTTTAGTGGGCATGGAAGGGGGTACGGGCACGG
AGGAGCACCGCCGGGAGTTCCATTACATCCACCGGAACCACCCAGGGCAA
GCAGCGGAGCCACCGGGCTGCGAAAACGACCAGGTGAGATATGAGATGAG
ATGAGGTAAGAAAAACGGCATAAGTTAGAGACGATCTATCGGCGGAAGGT
CGCGTGTGAAGCTCGGGGGGGGGGGCAACGAGTTGGAGCTCTCTTGGGGC
CGCATTGTCGTTGTCTCGCTTTCTGCTTATTGGCGCCGCTGGTTTTCCTC
GTGCAAGTTCAGTTCAGTTGGTTGTTTTCCTTGCCTTCCTCGTCCTCTCT
CCCGGGGTCGATGGCCCCCGTTCTTGCTCTCTATCGCCATATTTTGATTA
ACTCTAGATTACCAGTATTTGGTTCCCTTTTGTTGCCTCCCGACCTTTTT
TTCTTCTTGCGCCGCCGTGGATGTTTGGACCTTGTCTTTCTTGCCTTTTC
TTCTGTCGTGTTCTACATAGAATACCTCCTCCGCACCCTCCTACTAGCCC
CTACTCCCCCCTACAACCCTCTCCTCCTTACTAATTATTTCTACCCCAGG
GCGAGAGGACGGGTGCGACGGGGATGAAGAAGCTCGGCGAGCTGCCTGGC
AGGTGCAGGTCCAAGAAGACTCAAAGGCCAGGGTGGATGAGTCGCACAAG
GTGAGAACGCGAAAACCACCAAACGGCGTACGGCGAATGTGAATTAGGTG
CAATGCCAAGTCCCGTGGAACCGAAGCGAAGCGATGCCATGTCCAGGCAA
TGGGTATTGGGTTGGTTCAGATTTGTCCCGAACAAAAAAAAAGGAAGAAG
TATGCAAAGTGTGTTATACGAAGTAGTTCAGTATCACGGCGAACAAAGAG
TAAGACTACATACATAAATGGATGAACCTATTCAAAGACAGGGCAAGGGC
GGAATGAGTTGATGAAGCTTGTCAAAGACAGGGCGGAAAAACGGACACAC
TTTTTGGGCCAATCGATCACACAAAGCTGGAGCAAAACACCCCGACTGAC
AAAAATGGAGTATTTTATTGCAACACACACGACACACTACTACTCGATCG
AAAACTCCAAACAAAACACGGAAGGTGGAGAAGATGATCGGCGAGCTGGG
GCAGATGTTCAGCCGGTTCTCCACGATGGTGGCGGCGCAGGAGGAGGTGG
TGATGCACATCGAGGACGACGTCGAAGCCGCGCACGCCTTCGCGGAGGAA
GGACAGGCGCACCTCGCCAAGTGAGCCTTCGCCTTCCATTCCGAGTCCAG
TCCAGACCATTCGAGTAGACCAGTCCAGTCGAGTGGAGTAGAACCATTTA
GCACACGATAATGGTAGCGTACGCCTTTGTAGAACCGCAGCATTGTGGTG
GTACACTCATTCCTTTGGGTATGTGTTACAATTTTGAGTTCAGCTGGTGC
TTTTTTGGAGCAAGAGGTGCTTGGTGCTCTTTTTGTGGGGCTTGGCTGAG
TCGCTATACAAGTAGAGAGATCGGCCCGTATTTTCGTGGGGGGTGGGTGT
TCTGTTCTGGGTGCGAAGCAAGGTTCAAGGTTTTTACAGCTCCCCTGCGT
GCTAGTTTGGCCTCAATGCGATGGGTGCTTCCTTTGCTGCCCGATCTAAA
CCCCATTCTCTGGGGTGCTTGTTTTGCCTGTTTTAATCATCTGCAGGTAC
TACCAGATAATGAGCGGCAATCGCGGCATCATCATCAAGGTGTTCATCAT
GCTCATCCTGTTCATCTGGGTATTCCTGGGTCTGATGAGATGACACCACC
CTGCCATTCGGGGGTACTATTATGACGCTCGGCCAATCCACGAATCGTGC
CTTTGCGAATGGAAGAGATGTTGCAACCATAGCATATCGTAGACGATGGC
ATATTCCTAGTTTTCCACACCACACCGTTACAATTGGGGTTGGAGGGCAG
CGCAGGTACTAGGTTTTTCGAAGGGAGGAGGGGGGGTCTCCTCCGCCCGC
GAACTCAGCTACGTGGTTTTTATACTGTTCTGTTTTTGGTCGGCAGCTGA
GGTTGGAGGCGTATGTGTTGCATAGTCCTGCAACCCCTTCCGAGAGATGC
GCCCCACCACTCTTGGGCTGGGGAACCTCGAGGCAGAGACACTCATGCCG
CCGCCGCTTCGAGTGTGGGTGGACTACAAGCGCGCCGTGTCAGTGGTGTG
TTGCATGCTCTGACAACGGTCGACCTTCTTCCCTAGACCGAGGAAAAAGG
TTACCGTCGTCTCGAGCAACCACCGGAGCACTGAACAGGGTCTGCTTGCA
CTCTGCCCACACTCGAATCGGCCGTTGTGCCGACAGCCAGAGGATGTGTG
AGTGTGACAAACGGGGTTGAAGCCCTATGTATTGCTGCCGCTGCTGCCGC
TGCTGCCGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTCCTTTGGATG
CCTTCTTCCCACACCTTGAAGTATTTCGCCCTTGGTTCACTTGGTGGCGT
TACGTTACGTTACGTTACGTGCTAAGGGAGAGACGGAGAGAGACGGCCAC
GTCGATACAACGCGCGGTGGGCGTGTAGAAGCTGTTTCGACACAACAGGG
CGAAAGGGGCCGTATTGTTCGCTCGTGTCAAACCCGTGGTCGATCTGGTG
TCTACCGCGTCGAAGGACGGAGAAAAGACGAACTTTTCGTTGATTCGGAA
GCGTCCCGAGCTACATGTAGAGTTGATGTGTTTCGCACAAGCGAGGGCTT
CGGCAACGAGGGGAAGCAAATGGCGAGAACGAGAACGAGA
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Coding sequence (CDS) from alignment at C-linearis_contig99:415695..421134-

>mRNA_C-linearis_contig99.17185.1 ID=mRNA_C-linearis_contig99.17185.1|Name=mRNA_C-linearis_contig99.17185.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3006bp|location=Sequence derived from alignment at C-linearis_contig99:415695..421134- (Chordaria linearis ClinC8C monoicous)
ATGACGATGACAGACCGGACGGAAGAGTTCCGCGGGGCGGTGAACGTCTT
CCGCCCCACGGTGACGGTGGTGAAGGACAGCAGCGAGGCGGCGGCGACCA
GGGCGCAGTCGGACCTCGGGTATCGGAAGACGTCGGAGTTTCTCCAGCTT
GCGTCCAGCGTGGCTGTCGGCTTCGAGGGCACGTCCAAGCTGATGACGAT
GACAGACCGGACGGAAGAGTTCCGCGGGGCGGTGAACGTCTTCCGCCCCA
CGGTGACGGTGGTGAAGGACAGCAGCGAGGCGGCGGCGACCAGGGCGCAG
TCGGACCTCGGGTATCGGAAGACGTCGGAGTTTCTCCAGCTTGCGTCCAG
CGTGGCTGTCGGCTTCGAGGGCACGTCCAAGCTGATCGGGCGGCTCAAGA
AGCTGGTGGGGCGAAAGGGTTTCAGCAACAACCCCGCGGCCGAGATAAAC
GAAGTCATGAAGCTCTTCGAGGAGGACATGGCCGGCTTACAGAGGGATAT
ATCCTCGCTGCAGAGATCGGGCGGCTCAAGAAGCTGGTGGGGCGAAAGGG
TTTCAGCAACAACCCCGCGGCCGAGATAAACGAAGTCATGAAGCTCTTCG
AGGAGGACATGGCCGGCTTACAGAGGGATATATCCTCGCTGCAGAGGCAT
GCGGACGGCAAGACCAGGGGGAGCCCGCCGATCAACAGCCAGCGGCAGAT
GCACTGCGCGTTCATCGTTACGACGCTGCGGAAGAGCGCGCAGGAGCACA
CCAAGGCCTTCCGGGACGCGCTATTGCTGCGCGCAGCAGCATGCGGACGG
CAAGACCAGGGGGAGCCCGCCGATCAACAGCCAGCGGCAGATGCACTGCG
CGTTCATCGTTACGACGCTGCGGAAGAGCGCGCAGGAGCACACCAAGGCC
TTCCGGGACGCGCTATTGCTGCGCGCAGCAGTGGAGAAGCAGCAAAACGA
ACGGCAGCGCAAGTTCTCCCACTCCCGTGGCGTGGCTCCCGCGACCCAGC
TAGACTACCCGCTCTTCGGCAACGGTGGCGCCAGCGGGCCGCGACGCCGG
GGCCGCCCGGCCGCCTCTCCTCCCCCACCCCCGCCCGCCGCCGCCGCCGC
GGCCCCCCTGGACGGCGACGACGAAGACAACAAGGGGCACAAGACGAGCG
GAAGAGTTGCGGGGATGGGGTTGGCTACTTCGACCGCCGCGGCCGTAGTT
TCATCCTTGCCGTTCCCTTCCGGGAGGCCGGGGGGAGGGGGAGGGGTGAG
AAGGAGCGGCGAGGGCGTGATGGGTGGCGGCGGCGGCGGTGGCGGCAGCG
GCGGTGGTCAGGGTGGGTCTTGCTGGCCTCAGAAAACCGGGCCGCCCCCA
TGGCCAGGGGGGGGTTACAATGGCGGTGCCGGCGGGGGTGGTTCCGGCTA
CAGCAATGGTGCGGCTGGGGCGCCGCCGGGTGTCTTGGGAGCAGGAGGGG
CAGAGTACGGGCGTGGTGCTGGGGCGACTTCAGCGCCGGCTCACAGTAAT
GGGGGCGGTTTTAGTGGGCATGGAAGGGGGTACGGGCACGGAGGAGCACC
GCCGGGAGTTCCATTACATCCACCGGAACCACCCAGGGCAAGCAGCGGAG
CCACCGGGCTGCGAAAACGACCAGGTGGAGAAGCAGCAAAACGAACGGCA
GCGCAAGTTCTCCCACTCCCGTGGCGTGGCTCCCGCGACCCAGCTAGACT
ACCCGCTCTTCGGCAACGGTGGCGCCAGCGGGCCGCGACGCCGGGGCCGC
CCGGCCGCCTCTCCTCCCCCACCCCCGCCCGCCGCCGCCGCCGCGGCCCC
CCTGGACGGCGACGACGAAGACAACAAGGGGCACAAGACGAGCGGAAGAG
TTGCGGGGATGGGGTTGGCTACTTCGACCGCCGCGGCCGTAGTTTCATCC
TTGCCGTTCCCTTCCGGGAGGCCGGGGGGAGGGGGAGGGGTGAGAAGGAG
CGGCGAGGGCGTGATGGGTGGCGGCGGCGGCGGTGGCGGCAGCGGCGGTG
GTCAGGGTGGGTCTTGCTGGCCTCAGAAAACCGGGCCGCCCCCATGGCCA
GGGGGGGGTTACAATGGCGGTGCCGGCGGGGGTGGTTCCGGCTACAGCAA
TGGTGCGGCTGGGGCGCCGCCGGGTGTCTTGGGAGCAGGAGGGGCAGAGT
ACGGGCGTGGTGCTGGGGCGACTTCAGCGCCGGCTCACAGTAATGGGGGC
GGTTTTAGTGGGCATGGAAGGGGGTACGGGCACGGAGGAGCACCGCCGGG
AGTTCCATTACATCCACCGGAACCACCCAGGGCAAGCAGCGGAGCCACCG
GGCTGCGAAAACGACCAGGGCGAGAGGACGGGTGCGACGGGGATGAAGAA
GCTCGGCGAGCTGCCTGGCAGGTGCAGGTCCAAGAAGACTCAAAGGCCAG
GGTGGATGAGTCGCACAAGGGCGAGAGGACGGGTGCGACGGGGATGAAGA
AGCTCGGCGAGCTGCCTGGCAGGTGCAGGTCCAAGAAGACTCAAAGGCCA
GGGTGGATGAGTCGCACAAGGTGGAGAAGATGATCGGCGAGCTGGGGCAG
ATGTTCAGCCGGTTCTCCACGATGGTGGCGGCGCAGGAGGAGGTGGTGAT
GCACATCGAGGACGACGTCGAAGCCGCGCACGCCTTCGCGGAGGAAGGAC
AGGCGCACCTCGCCAAGTGGAGAAGATGATCGGCGAGCTGGGGCAGATGT
TCAGCCGGTTCTCCACGATGGTGGCGGCGCAGGAGGAGGTGGTGATGCAC
ATCGAGGACGACGTCGAAGCCGCGCACGCCTTCGCGGAGGAAGGACAGGC
GCACCTCGCCAAGTACTACCAGATAATGAGCGGCAATCGCGGCATCATCA
TCAAGGTGTTCATCATGCTCATCCTGTTCATCTGGGTATTCCTGGGTCTG
ATGAGATGAGTACTACCAGATAATGAGCGGCAATCGCGGCATCATCATCA
AGGTGTTCATCATGCTCATCCTGTTCATCTGGGTATTCCTGGGTCTGATG
AGATGA
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