mRNA_C-linearis_contig99.17179.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig99.17179.1 vs. uniprot
Match: D8LPM7_ECTSI (RPA_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPM7_ECTSI) HSP 1 Score: 375 bits (964), Expect = 3.020e-124 Identity = 195/267 (73.03%), Postives = 224/267 (83.90%), Query Frame = 1
Query: 115 KQSILSVNVKQVVLESEMSNQDAGAKIDGVDVALVKVVGCIVEMDDASTNTEYTIEDTTGRLKVKNFHNDGEGGNDRSAEKRARNQIGTYVRVFGNVRSWKDDRHSVAYLIEPVDDMNEVTHHYLDTIYTHLFNTKGPLPGKGSVGGGAAVAQPMNGVGSPGFHGSSSQQGFTSPGNG--------MLNN-NQGGGDAKGFSSVQQQVHDMFIGADDEQGRSVTDVANALRGRGISQQDVLDAVQFLSGEGHLYSTIDDDHYRSTET 888
+QS+LSVN+KQV LESEM+NQD+GAKIDG DV+ +K+VGCIVE+D+ASTNTEYT+EDTTGRLKVK FHNDGEG NDR+AEKRAR Q+GTYVRVFGNVRSWKDDRHSVAY + P+ DM+EVT H L+TIYTHLFNTKGPLPGK S GGA VAQPMNGVGSPGF+G SSQ GFTSPGN M NN N +KGF+ +QQ+VHD F+GAD+EQGRS+ +VA++L GIS+ DV AVQFLS EGHLYSTIDDDHYRSTET
Sbjct: 64 QQSLLSVNIKQV-LESEMANQDSGAKIDGADVSQIKLVGCIVEVDEASTNTEYTVEDTTGRLKVKMFHNDGEGANDRAAEKRARCQVGTYVRVFGNVRSWKDDRHSVAYTMTPITDMDEVTLHALETIYTHLFNTKGPLPGKASTFGGAGVAQPMNGVGSPGFNGGSSQHGFTSPGNNXXXXXXXXMYNNSNMDPEGSKGFTPIQQKVHDQFLGADEEQGRSIAEVADSLTREGISRTDVSTAVQFLSSEGHLYSTIDDDHYRSTET 329
BLAST of mRNA_C-linearis_contig99.17179.1 vs. uniprot
Match: A0A835YU42_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU42_9STRA) HSP 1 Score: 187 bits (474), Expect = 1.260e-51 Identity = 114/270 (42.22%), Postives = 165/270 (61.11%), Query Frame = 1
Query: 97 GQRSKEKQSILSVNVKQVVLESEMSNQDAGAKIDGVDVALVKVVGCIVEMDDASTNTEYTIEDTTGRLKVKNFHNDGEGGNDRSAEKRARNQIGTYVRVFGNVRSWKDDRHSVAYLIEPVDDMNEVTHHYLDTIYTHLFNTKGPL---PGKGSVG-GGAAVAQPMN--GVGSPGF--HGSSSQQGFTSPGNGMLNNNQGGGDAKGFSSVQQQVHDMFIGADDEQGRSVTDVANALRGRGISQQDVLDAVQFLSGEGHLYSTIDDDHYRST 882
G+ S+EKQSI+ + +KQV LES+ N D K+DGV++ V++VGCI+++++ STN + IED TGR+ K F E E+R+R + G YV V G ++ W+D H A+ I P++D N++T H+L+ IY HL NT GPL PG + G GGAA AQPM GSPGF G ++QQG G N G D+ + + Q++ D+F + G S+ A+ L+ +GI D+ DAV +LS EGH+Y+T+DD HY+ST
Sbjct: 28 GRPSREKQSIMPLTIKQV-LESQHDNPDDKPKVDGVEIVHVRLVGCIIDINEHSTNAVFKIEDGTGRIDAKVFIEQDES--QLQTERRSRCREGVYVAVVGQIKRWQDKLHVHAFDIRPLEDTNQITQHFLEAIYAHLHNTLGPLRKAPGGAAGGIGGAAGAQPMAVANYGSPGFARQGGAAQQGNY----GAFNGGGGEMDSNNLAPLHQKLLDIFQADTNPHGLSLDYCADVLKPQGIGYDDIRDAVVYLSSEGHIYTTVDDFHYKST 290
BLAST of mRNA_C-linearis_contig99.17179.1 vs. uniprot
Match: A0A7S3AZ16_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AZ16_9EUKA) HSP 1 Score: 139 bits (351), Expect = 1.070e-33 Identity = 96/261 (36.78%), Postives = 145/261 (55.56%), Query Frame = 1
Query: 106 SKEKQSILSVNVKQVVLESEMSNQDAGAKIDGVDVALVKVVGCIVEMDDASTNTEYTIEDTTGRLKVKNFHNDGEGGNDRSAEKRARNQIGTYVRVFGNVRSWKDDRHSVAYLIEPVDDMNEVTHHYLDTIYTHLFNTKGPLPGKGSVGGGAAVAQPMNGVGSPGFHGSSSQQGFTSPGNGMLNNNQGGGDAKGFSSVQQQVHDMFI--GADDEQGRSVTDVANALRGRGISQQDVLDAVQFLSGEGHLYSTIDDDHYRST 882
+++KQS++ +KQ+ SN +A IDG D+ + +VG I D+ +TN +Y+++D T + VK + D E ++ E+RA+ + G VRV G +R++ + + VAY I+P+ + NE T H++D ++THL TKG G G V G PMNG G G + QQG N GG A V V F G + G ++ DV A+ + IS+Q V +AV+FL+ EGHLYSTIDDDH+++T
Sbjct: 67 NRDKQSLIPATIKQLKNAVPASNGEASFMIDGADLHQITIVGLITSADEQATNLQYSVDDGTDHIMVKMWI-DAEA-DESFQERRAQWKEGVVVRVIGQLRAFNNSKSVVAYSIQPITNFNEYTFHFIDVVHTHLKATKGKPVGVG-VPRGIMGGFPMNGGG---MGGPAMQQGMAQA---APNVPTGGAPA----DVNNLVLSFFKTKGEASDMGCTIGDVVGAVSAQNISEQRVREAVEFLTNEGHLYSTIDDDHFKAT 314
BLAST of mRNA_C-linearis_contig99.17179.1 vs. uniprot
Match: A0A7S0HR69_9EUKA (Hypothetical protein n=2 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0HR69_9EUKA) HSP 1 Score: 139 bits (350), Expect = 2.300e-33 Identity = 96/258 (37.21%), Postives = 144/258 (55.81%), Query Frame = 1
Query: 115 KQSILSVNVKQVVLESEMSNQDAGAKIDGVDVALVKVVGCIVEMDDASTNTEYTIEDTTGRLKVKNFHNDGEGGNDRSA-EKRARNQIGTYVRVFGNVRSWKDDRHSVAYLIEPVDDMNEVTHHYLDTIYTHLFNTKGPLPGKGSVGGGAAVAQPMNGVGSPGFHGSSSQQGFTSPGNGMLNNNQGGGDAKGFSSVQQQVHDMFIG-ADDEQGRSVTDVANALRGRGISQQDVLDAVQFLSGEGHLYSTIDDDHYRST 882
KQS+ +KQ+ + S D G +DG D+ V +VG I D+ +TN +YT++D T + VK + + D +A EKRA+ + G VRV G +R++ R VA+ I+P+ D NE T H+++ ++THL NTKG +G+ GA +A GV + G G + QG G G Q G A G +S Q V F A+ + G +++D NA+ +G++ V AV+ L EGHLYSTIDD+HY++T
Sbjct: 88 KQSLAPCTIKQLK-NAPASGGDNGFSVDGKDLHQVTIVGLITHADEQNTNLQYTVDDGTDSINVKMWI---DAATDEAAMEKRAQWREGAVVRVIGQMRAFNQVRSIVAFHIQPLTDFNEYTFHFIEVVHTHLRNTKGAAAEQGAPAAGAGMAGASMGV-AGGMAGGMAPQG----GAGFAP--QAGFAANGAASTQDTVMKYFTSYAETDIGCTISDCVNAMAPQGVTDAQVRTAVEALVNEGHLYSTIDDEHYKAT 334
BLAST of mRNA_C-linearis_contig99.17179.1 vs. uniprot
Match: F0YKH3_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YKH3_AURAN) HSP 1 Score: 132 bits (333), Expect = 6.130e-32 Identity = 94/262 (35.88%), Postives = 141/262 (53.82%), Query Frame = 1
Query: 106 SKEKQSILSVNVKQVVLESEMSNQDAGAKIDGVDVALVKVVGCIVEMDDASTNTEYTIEDTTGRLKVKNFHNDGEGGNDRSAEKRARNQI-GTYVRVFGNVRSWKDDRHSVAYLIEPVDDMNEVTHHYLDTIYTHLFNTKGPLPGKGSVGGGAAVAQPMNGVGSPGFHGSSSQQGFTSPGNGMLNNNQGGGDAKGFSSVQQQVHDMFI--GADDEQGRSVTDVANALRGRGISQQDVLDAVQFLSGEGHLYSTIDDDHYRST 882
+++KQS++ + +KQV+ ++ + +D G +DG +V V+VVG I+ D T YTIED TG L+ + N E G + E+RA + G+YV V G ++ + + AY + P++D NE+THHYL+ IY+H T G GGGAA G +P G S + G+G G ++ Q +V + + G DE G +V VA++L + V V+FLS EGHLYSTIDDDH++ST
Sbjct: 1 ARDKQSLIPMTIKQVLSATKAAGEDDGFAVDGREVNQVRVVGNILRQDKKETKHVYTIEDQTGMLECTMWVNQEEAG--ATVEERAEKMVNGSYVCVIGGLKEYNGKLNVSAYDVRPIEDFNEITHHYLEAIYSHAKQTNAIKTG----GGGAAAPASAFGAFNP-SGGRVSADAMDTSGDG------------GMTADQTKVFNFYTTEGTGDE-GCNVNSVASSLA---MDLNQVKHIVEFLSSEGHLYSTIDDDHHKST 239
BLAST of mRNA_C-linearis_contig99.17179.1 vs. uniprot
Match: A0A7S2B4J1_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B4J1_9STRA) HSP 1 Score: 131 bits (330), Expect = 1.460e-31 Identity = 92/237 (38.82%), Postives = 129/237 (54.43%), Query Frame = 1
Query: 178 DAGAKIDGVDVALVKVVGCIVEMDDASTNTEYTIEDTTGRLKVKNFHNDGEGGNDRSAEKRARNQIGTYVRVFGNVRSWKDDRHSVAYLIEPVDDMNEVTHHYLDTIYTHLFNTKGPL-PGKGSVGGGAAVAQPMNGVGSPGFHGSSSQQGFTSPGNGMLNNNQGGGDAKGFSSVQQQVHDMFIG-ADDEQGRSVTDVANALRGRGISQQDVLDAVQFLSGEGHLYSTIDDDHYRST 882
D+ K+DG D+ +K+VG I+ +++ ST Y IED TG + K + + G+ D AEKRA + G+YVR G +R ++ + Y + PV D NE+THH L+ IY HL NTKG G+ GVG GF+ + S M ++ QG GD FS+VQ +V F E+G S+ D +L G Q V + V+FLS EGHLYSTIDD+H++ST
Sbjct: 11 DSNYKVDGQDIHQLKLVGNILSIEEHSTYAVYKIEDGTGVVDCKLWIDAGDSEAD--AEKRALCRQGSYVRAVGVLRDFQGNASVQLYDMRPVTDHNEITHHMLEAIYVHLQNTKGSKNAGQPXXXXXXXXXXXXXGVG--GFNAPAVNTNLNSA---MASDGQGSGD---FSTVQTEVLAYFTNNGSGEEGASINDAVKSLCANGHHDQAVRETVEFLSNEGHLYSTIDDEHFKST 237
BLAST of mRNA_C-linearis_contig99.17179.1 vs. uniprot
Match: A0A8J2SFF3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SFF3_9STRA) HSP 1 Score: 130 bits (326), Expect = 1.470e-30 Identity = 94/264 (35.61%), Postives = 139/264 (52.65%), Query Frame = 1
Query: 100 QRSKEKQSILSVNVKQVVLESEMSNQDAGAKIDGVDVALVKVVGCIVEMDDASTNTEYTIEDTTGRLKVKNFHNDGEGGNDRSAEKRARNQIGTYVRVFGNVRSWKDDRHSVAYLIEPVDDMNEVTHHYLDTIYTHLFNTKGPLPGKGSVGGGAAVAQPMNGVGSPGFHGSSSQQGFTSPGNGMLNNNQGGGD-AKGFSSVQQQVHDMFI--GADDEQGRSVTDVANALRGRGISQQDVLDAVQFLSGEGHLYSTIDDDHYRST 882
++ ++KQ++ V +KQ+ + D G KID ++ V+VV C+ + T Y IED TG ++V + ND + + + +K A+ G YV V GN++ + AY + PV+D N+VTHHYL+ IY H GK V GAA A + + GFH ++ Q GG D A G +S+Q++V D + G DE G + VA +L G+ V AV+FLS EGHLYSTID+DH++ST
Sbjct: 36 KKPRDKQTLTPVTIKQLQSAEKGVGDDDGYKIDNAEIHSVRVVACVQTDEVRETKATYNIEDGTGSVEVTFWLNDAQDEDSWARQKLAKMTPGAYVVVHGNIKEYDGRLTISAYDMRPVEDFNQVTHHYLEAIYVHAKRV-----GKIQVSSGAAPAAKRDSM--AGFHPTTHGQSAA-----------GGADGADGMTSLQKRVLDYYTENGTGDE-GCNTDSVAASL---GLDLGQVKAAVEFLSSEGHLYSTIDEDHHKST 277
BLAST of mRNA_C-linearis_contig99.17179.1 vs. uniprot
Match: A0A7S0DLE7_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DLE7_9EUKA) HSP 1 Score: 129 bits (324), Expect = 2.310e-30 Identity = 93/265 (35.09%), Postives = 132/265 (49.81%), Query Frame = 1
Query: 97 GQRSKEKQSILSVNVKQVVLESEMSNQDAGAKIDGVDVALVKVVGCIVEMDDASTNTEYTIEDTTGRLKVKNFHNDGEGGNDRSAEKRARNQIGTYVRVFGNVRSWKDDRHSVAYLIEPVDDMNEVTHHYLDTIYTHLFNTKGPLPGKGSVGGGAAVAQPMNGVGSPGFHGSSSQQGFTSPGNGMLNNNQGGGDAKGFSSVQQQVHDMF--IGADDEQGRSVTDVANALRGRGISQQDVLDAVQFLSGEGHLYSTIDDDHYRSTE 885
GQ+ QS+ + KQ + + IDG +A V+VVG I+ +D ST + Y I+D +G+L VK + ND ++ R I YVRV G +R R VA+ I+P+ MNE+T H LD I+THL NTKGPL K + A N + + G+ M + +G +VQQ+V F IG+ EQG SV +V LR + +AV FLS EGHLYST+D+ H++ T+
Sbjct: 34 GQQKGRNQSMTPITCKQA--REAKAIDGSSFTIDGQTIAQVRVVGLILNVDHESTQSSYGIDDGSGQLTVKMYRNDDA----EDLDQHCREDI--YVRVVGTMRELAGQRIVVAFQIQPLKSMNEITLHNLDVIHTHLRNTKGPLESKKN-----RKAAANNNL-------------YNEHGDSMYKKSSSEAQVEGMDNVQQEVLQAFKSIGSAKEQGASVNEVIQRLRK--FDPVKIREAVDFLSNEGHLYSTLDETHFKCTD 270
BLAST of mRNA_C-linearis_contig99.17179.1 vs. uniprot
Match: K3W659_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W659_GLOUD) HSP 1 Score: 130 bits (326), Expect = 2.660e-30 Identity = 86/276 (31.16%), Postives = 142/276 (51.45%), Query Frame = 1
Query: 106 SKEKQSILSVNVKQVVLESEMSNQDAGAKIDGVDVALVKVVGCIVEMDDASTNTEYTIEDTTGRLKVKNFHNDGEGGNDRSAEKRARNQIGTYVRVFGNVRSWKDDRHSVAYLIEPVDDMNEVTHHYLDTIYTHLFNTKGPLPGKGSVGGGAAVAQPMNGVGSPGFHGSSSQQGFTSPGNGMLNNNQGGGDAKG-----------------FSSVQQQVHDMFIGADDEQGRSVTDVANALRGRGISQQDVLDAVQFLSGEGHLYSTIDDDHYRST 882
S++ Q++L + KQ L S ++ D +ID +V VK+VG + + STN + ++D TG + + F + + D + + A+ + G YVRV GN+R++++ A+ + P++D NE+THH+LD IY H +NTKGPL G G A P+ G S GF +P G NQG G FS Q+ + D+ ++G + + LRG+ +S+ + A+ +L+ EGH+YSTID++H++ T
Sbjct: 44 SRDAQTLLPITAKQ--LASRNASDDDVIRIDNQEVTNVKMVGILSNVVPHSTNVNFQLDDGTGIIDGRMFLHADDA--DLAESEIAKLRDGIYVRVVGNLRTFQEKVSLSAFSVTPIEDFNEITHHFLDAIYVHCYNTKGPLQSSGGAAGANAFGTPVKG----------SSSGFDAPLAGQQTWNQGSSTYLGHSGSMGGGMDYGMMDSNFSPEQKAILDVLGTCTSDRGLKIDQIFLELRGQ-MSEDQLRGALNYLTSEGHVYSTIDENHFKRT 304
BLAST of mRNA_C-linearis_contig99.17179.1 vs. uniprot
Match: A0A6G0IC02_LARCR (Replication protein A 32 kDa subunit n=1 Tax=Larimichthys crocea TaxID=215358 RepID=A0A6G0IC02_LARCR) HSP 1 Score: 129 bits (323), Expect = 3.510e-30 Identity = 89/240 (37.08%), Postives = 132/240 (55.00%), Query Frame = 1
Query: 169 SNQDAGAKIDGVDVALVKVVGCIVEMDDASTNTEYTIEDTTGR-LKVKNFHNDGEGGNDRSAEKRARNQIGTYVRVFGNVRSWKDDRHSVAYLIEPVDDMNEVTHHYLDTIYTHLFNTKGPLPGKGSVGGGAAVAQPMNGVGSPGFHGSSSQQGFTSPGNGMLNNNQGGGDAKGFSSVQQQVHDMFIGADDEQGRSVTDVANALRGRGISQQDVLDAVQFLSGEGHLYSTIDDDHYRSTE 885
S D KI V+VA V +VG I D + TN +Y ++D TG + +K + + + D + GTYV+V GN+RS+++ R VA+ + P++DMNE+T H L+ + H+ +K P G+ GG ++ PM+ PG S +G S N M NN G S+ Q QV + D+QG S+ D+ LR GIS + AV+FLS EGH++STID+DHY+ST+
Sbjct: 55 SQADEAFKIGEVEVAQVTIVGIIRSTDKSMTNIQYKVDDMTGAPMDIKQWVDTEDPSMDSTVL-----PPGTYVKVSGNLRSFQNHRSVVAFSVRPLEDMNEITSHMLEVVQAHMVLSK-PQSTPGTGGGTSSNVTPMS---RPGME---SMRGSYSGANDMANN--------GLSANQNQVLSLIRSCPDQQGISIQDLK--LRLSGISLGVIKQAVEFLSNEGHIFSTIDEDHYKSTD 272 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig99.17179.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig99.17179.1 >prot_C-linearis_contig99.17179.1 ID=prot_C-linearis_contig99.17179.1|Name=mRNA_C-linearis_contig99.17179.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=281bp MTGGAVDSPAGGGGSGGQRSKEKQSILSVNVKQVVLESEMSNQDAGAKIDback to top mRNA from alignment at C-linearis_contig99:380452..386358+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig99.17179.1 ID=mRNA_C-linearis_contig99.17179.1|Name=mRNA_C-linearis_contig99.17179.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5907bp|location=Sequence derived from alignment at C-linearis_contig99:380452..386358+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig99:380452..386358+ >mRNA_C-linearis_contig99.17179.1 ID=mRNA_C-linearis_contig99.17179.1|Name=mRNA_C-linearis_contig99.17179.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1686bp|location=Sequence derived from alignment at C-linearis_contig99:380452..386358+ (Chordaria linearis ClinC8C monoicous)back to top |