mRNA_C-linearis_contig99.17169.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig99.17169.1
Unique NamemRNA_C-linearis_contig99.17169.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig99.17169.1 vs. uniprot
Match: A0A6H5JUT1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUT1_9PHAE)

HSP 1 Score: 383 bits (984), Expect = 4.110e-127
Identity = 259/402 (64.43%), Postives = 289/402 (71.89%), Query Frame = 1 
Query:   16 DGSTTPAPXXXXXXDAEMQHTGPMVAVYLDNESVEKLHREYPGANPGRLRKAVIQYNPSADQRSLYERHFGGSATVKLTGEASSENRLALTASVSSAGGSVEPQSLSCAVDVTPGGVGGGPLGSTVLIEQIKRAGALTEESWKGQLPALSAHERDFSTEEGSFNKLDEPLTLQGSICRADWVEGKSGFCRTTAEGGGKREDGWTPQVCPMCNTFEASPCRDIYKIFDRMSKRINELQPPKESESQ-SQNPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------------------LRREEVDMLKFKRVSIMQEMLTCSQFHHVFEDLNADDGLVPGMPDEEVEGGE 1158
            D +T PAP         +Q TGPMVAVYLD+ S+EKL  +YPG NPGRLRK VI+Y+PS +QR LYE  FG SATVKLTGEASSENR+AL ASVSSAG SVEP SLSCAVDVTPG VGGGPLGSTVLIEQIKR GA+ E+SWKG LPALSAHERDF +EEGS+NKLDEPLTL GSICRADWVEG +G CRTT  GGGKREDGWTPQ C +CN+ E+SPCRDIYK FD ++ RINELQPP E+ S  S++P     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                                    LRREE+++L+ KR  +M +ML CSQFHHV ED NADDGLVP M  ++ EGGE
Sbjct:   40 DATTAPAPAPSPP----LQRTGPMVAVYLDDSSIEKLQMKYPGTNPGRLRKVVIEYDPSDEQRGLYEPRFGDSATVKLTGEASSENRVALVASVSSAGTSVEPPSLSCAVDVTPGEVGGGPLGSTVLIEQIKRVGAVAEDSWKGLLPALSAHERDFLSEEGSYNKLDEPLTLTGSICRADWVEGMTGVCRTTTAGGGKREDGWTPQPCTICNSLESSPCRDIYKEFDALNTRINELQPPSETSSDGSKSPGTSPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVAFEGSAGTAVGGGDENALSGRQGGHSRKGEGGEKESEEXXXXXXXXXEERLRREELEVLEEKRTDVMVKMLKCSQFHHVLEDSNADDGLVPDMSGDDEEGGE 437
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BLAST of mRNA_C-linearis_contig99.17169.1 vs. uniprot
Match: D7FZ55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ55_ECTSI)

HSP 1 Score: 370 bits (949), Expect = 9.590e-122
Identity = 246/416 (59.13%), Postives = 273/416 (65.62%), Query Frame = 1 
Query:    1 SAEKPDGSTTPAPXXXXXXDAEMQHTGPMVAVYLDNESVEKLHREYPGANPGRLRKAVIQYNPSADQRSLYERHFGGSATVKLTGEASSENRLALTASVSSAGGSVEPQSLSCAVDVTPGGVGGGPLGSTVLIEQIKRAGALTEESWKGQLPALSAHERDFSTEEGSFNKLDEPLTLQGSICRADWVEGKSGFCRTTAEGGGKREDGWTPQVCPMCNTFEASPCRDIYKIFDRMSKRINELQPPKESESQSQNPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------------------LRREEVDMLKFKRVSIMQEMLTCSQFHHVFEDLNADDGLVPGM--PDEEVEGGEDATSG 1173
            +A K D +T P  XXXXXX   +Q TGPMVAVYLD+ S+EKL  EYPG  PGRLRK VI+Y+PS +QR LYE  FGGSATVK+TGEA S+NRLAL ASVSSAG SVEP SLSCAVDVTPG VGGGPLGSTVLIEQIKR GAL E+SWKG LP LSAHERDF +EEGS+NKLDEPLTL GSICRADWVE  +G CRTT  GGGKREDGWTPQ C +CNT E+SPCRDI+K FD +S RI ELQP  E+ S    P  XXXXXXXXXXXXXXXXXXXXXXXXXX                                                                           LRREE+++L+ KR+ +M EM  CS+FHHV ED  ADDGLVPGM   DEE E G+ A  G
Sbjct:   35 NAVKGDATTAPXXXXXXXXXXPLQRTGPMVAVYLDDSSIEKLQMEYPGTKPGRLRKVVIEYDPSDEQRGLYEPRFGGSATVKVTGEACSDNRLALVASVSSAGTSVEPPSLSCAVDVTPGDVGGGPLGSTVLIEQIKRVGALAEDSWKGLLPPLSAHERDFPSEEGSYNKLDEPLTLTGSICRADWVEPMTGVCRTTTAGGGKREDGWTPQACSICNTLESSPCRDIHKKFDAVSTRIYELQPTSETSSDGSKPPGXXXXXXXXXXXXXXXXXXXXXXXXXXKQTEATEVVAGSDRGAGRSGTDIASEGSAGPAVGGGDENALSGRHGGHSPSRKGEVGEKESVAGGSGEPETEEERLRREELEVLEDKRMVVMVEMFRCSKFHHVLEDSYADDGLVPGMLGDDEEGEEGDAAPGG 450
[Close]
BLAST of mRNA_C-linearis_contig99.17169.1 vs. uniprot
Match: D8LQJ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQJ5_ECTSI)

HSP 1 Score: 171 bits (434), Expect = 9.370e-47
Identity = 92/194 (47.42%), Postives = 120/194 (61.86%), Query Frame = 1 
Query:  208 LYERHFGGSATVKLTGEASSENRLALTASVSSAGGSVEPQSLSCAVDVTPGGV------------GGGPLGSTVLIEQIKRAGALTEESWKGQLPALSAHERDFSTEEGSFNKLDEPLTLQGSICRADWVEGKSGFCRTTAEGGGKREDGWTPQVCPMCNTFEASPCRDIYKIFDRMSKRINELQPPKESESQS 753
            +Y   F G A V +TG+ASS  R AL ASVS AG  VEP SLS  +D++P  +            G GPL S VLIEQ K+AGA  EE W+G LP + AH+R F +E G++ +L EP+T+ G+ICRADWV+G S  CR T EGG KRE+ W P  C +C  F  SPC+ I++ F   SKR +E     E+E ++
Sbjct:    1 MYRHLFSGKAEVTVTGDASSFARRALVASVSHAGKIVEPASLSATIDISPPAITDPEASAVAENDGPGPLASAVLIEQAKKAGATKEEMWEGTLPPMLAHDRRFPSEPGAYVRLKEPITVYGTICRADWVDGASNVCRDTLEGGQKREEDWEPSDCSICAFFSVSPCKGIFERFVATSKRRDEYLKTYETEQEA 194
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig99.17169.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JUT1_9PHAE4.110e-12764.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZ55_ECTSI9.590e-12259.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LQJ5_ECTSI9.370e-4747.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig99contigC-linearis_contig99:312441..314617 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1209
Cds size1209
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig99.17169.1prot_C-linearis_contig99.17169.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig99 312441..314617 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930849.6891124-CDS-C-linearis_contig99:312440..3126861622930849.6891124-CDS-C-linearis_contig99:312440..312686Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 312441..312686 +
1690881281.4784133-CDS-C-linearis_contig99:312440..3126861690881281.4784133-CDS-C-linearis_contig99:312440..312686Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 312441..312686 +
1622930849.7101293-CDS-C-linearis_contig99:312968..3131541622930849.7101293-CDS-C-linearis_contig99:312968..313154Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 312969..313154 +
1690881281.4928527-CDS-C-linearis_contig99:312968..3131541690881281.4928527-CDS-C-linearis_contig99:312968..313154Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 312969..313154 +
1622930849.7306778-CDS-C-linearis_contig99:313630..3138871622930849.7306778-CDS-C-linearis_contig99:313630..313887Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 313631..313887 +
1690881281.5015178-CDS-C-linearis_contig99:313630..3138871690881281.5015178-CDS-C-linearis_contig99:313630..313887Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 313631..313887 +
1622930849.7470436-CDS-C-linearis_contig99:314097..3146171622930849.7470436-CDS-C-linearis_contig99:314097..314617Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 314098..314617 +
1690881281.5100646-CDS-C-linearis_contig99:314097..3146171690881281.5100646-CDS-C-linearis_contig99:314097..314617Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 314098..314617 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig99.17169.1

>prot_C-linearis_contig99.17169.1 ID=prot_C-linearis_contig99.17169.1|Name=mRNA_C-linearis_contig99.17169.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=403bp
SAEKPDGSTTPAPTPTPAPDAEMQHTGPMVAVYLDNESVEKLHREYPGAN
PGRLRKAVIQYNPSADQRSLYERHFGGSATVKLTGEASSENRLALTASVS
SAGGSVEPQSLSCAVDVTPGGVGGGPLGSTVLIEQIKRAGALTEESWKGQ
LPALSAHERDFSTEEGSFNKLDEPLTLQGSICRADWVEGKSGFCRTTAEG
GGKREDGWTPQVCPMCNTFEASPCRDIYKIFDRMSKRINELQPPKESESQ
SQNPSAESSSGTPSEASSAEDNERGAFKNESRSESNDAAEKSSLGGENAI
SSGEGKGSIEGKSKGKGPQESKGEEPETETEDEKLRREEVDMLKFKRVSI
MQEMLTCSQFHHVFEDLNADDGLVPGMPDEEVEGGEDATSGTGSGAGEGE
SSG
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mRNA from alignment at C-linearis_contig99:312441..314617+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig99.17169.1 ID=mRNA_C-linearis_contig99.17169.1|Name=mRNA_C-linearis_contig99.17169.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2177bp|location=Sequence derived from alignment at C-linearis_contig99:312441..314617+ (Chordaria linearis ClinC8C monoicous)
TCAGCAGAAAAGCCCGATGGATCAACCACGCCTGCGCCAACACCAACACC
AGCACCAGACGCAGAGATGCAGCACACCGGGCCTATGGTGGCGGTTTACC
TAGACAACGAATCCGTGGAAAAGCTGCACCGAGAGTACCCGGGCGCTAAC
CCCGGGCGGCTGAGGAAAGCGGTGATCCAGTACAACCCTTCCGCTGATCA
GCGCAGCTTGTATGAAAGGCACTTCGGTGGCTCGGCTACAGTCAAGGTAT
GTATCGATGGTAGACTAGTAGGACACGACCGCTCCCTGTTTCCTGCAGCA
TTGAGGTTACACATTTCGGTAAACCTCGTCACTCCAGCATCACTTCTCAT
CTCGTGACTACACGCTCGAAACGATGGTTGAAAGCTCGATGGTGTGTTGC
GTTCAACACACGCCAACACAAACATTCCCACGGCTTGCAGCCATGCACAC
CCATGATTTCTTACCTCTTCCCTCTCTCGCCCTTCTCTCCCGCAATGTGA
TGCTGTGATAATAATTTGCCGTGAAAAGTTAACCGGCGAAGCTTCCAGCG
AAAACCGCCTTGCCCTGACGGCTTCGGTGTCTAGTGCCGGGGGCTCCGTG
GAGCCGCAGTCTCTGTCCTGCGCCGTGGACGTAACCCCGGGGGGTGTGGG
TGGAGGTCCCCTAGGCAGCACGGTCCTCATCGAGCAGATCAAGCGGGCTG
GGGCACTCACGGAGGTGATTGACATTGACATTGACATTGACATGATGCTT
TCTGTGTTGTTGCTTTAGCCGATAGACTAGACTCATCAAGACCAATGTTA
TTGTTGTAGAAATTTTGGTAATCCCATCTTTCCCGTTCTGACTCATCCAT
GTCCCCCGAAACCCCTTGCAAACCAAGCTACGAAGTATACTCTTTACAAG
CTAACCTGTCTTGTCCACTAGGCAACGTCCGATGACACCTTTGTAAAAAT
TTCTTTACTTTCCTTGTGCGAGCCGAAGCTATAGATAAAATTTGTTCGTC
TCTTTTTCGAAATTCCAACCTACATACAATCTAGCAAACACAATCGGCCT
TCAACCAGCATCTATATGTAGAGCACCGTATCAGTTGCTCTTGTTGGTCT
CTATGTATGTACTTTAAAATATGTACTTCGATGTTTGTATGTATGTCGCA
CAACTATAGACACGCTGGCTCTTTTTATTTGACGCACCAGGAATCGTGGA
AAGGTCAGCTTCCCGCCCTTTCGGCCCACGAAAGAGACTTCTCGACCGAG
GAGGGCAGCTTCAACAAACTAGACGAGCCCCTCACTCTCCAGGGCTCAAT
TTGCCGAGCGGATTGGGTGGAAGGCAAGAGCGGCTTTTGCCGAACCACGG
CCGAAGGAGGGGGGAAGCGAGAGGACGGATGGACGCCCCAGGTCTGCCCC
ATGTGCAACACGTTCGAAGCTAGTCCGTGCCGAGATATTTACAAAATGTG
AGTACTTGTTCTCTTGATTGCATTCTCCGTGGCCGAGGTTTGTCCACCTT
CGAGGGTCTATTTTATAGGAGTAAATCTTTTGAACGTCACCAAATGATCT
CTTTCTCTTCCACTGCTGCTGTCGGAAGAGGTCCAATGTTACCTCGCCGG
TATTTTGTCGGTCTGACGTATTTCCTGACTGCCTGATCTCTACCCTCCGC
CCAACAGATTCGATAGAATGTCCAAGAGAATAAACGAGCTCCAACCGCCG
AAAGAGTCTGAGAGTCAGAGTCAGAATCCTTCCGCCGAAAGTTCTTCAGG
AACTCCCTCAGAAGCTTCCTCTGCAGAAGACAACGAACGAGGTGCTTTCA
AGAACGAATCGCGATCTGAGAGCAATGATGCCGCTGAAAAGTCTAGCCTC
GGCGGTGAAAACGCGATTTCGAGCGGAGAAGGGAAAGGCAGCATAGAGGG
TAAGAGTAAGGGCAAAGGTCCCCAGGAGAGCAAAGGCGAAGAGCCGGAGA
CGGAGACGGAAGATGAGAAGCTGCGACGGGAGGAGGTGGACATGCTAAAG
TTCAAGAGGGTTTCGATCATGCAAGAGATGCTCACGTGCTCGCAGTTCCA
CCACGTGTTTGAGGACTTGAATGCTGACGATGGATTGGTGCCGGGCATGC
CTGATGAGGAGGTAGAGGGCGGTGAAGACGCGACCTCTGGGACGGGCAGT
GGGGCCGGGGAGGGCGAAAGTAGCGGC
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Coding sequence (CDS) from alignment at C-linearis_contig99:312441..314617+

>mRNA_C-linearis_contig99.17169.1 ID=mRNA_C-linearis_contig99.17169.1|Name=mRNA_C-linearis_contig99.17169.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2418bp|location=Sequence derived from alignment at C-linearis_contig99:312441..314617+ (Chordaria linearis ClinC8C monoicous)
TCAGCAGAAAAGCCCGATGGATCAACCACGCCTGCGCCAACACCAACACC
AGCACCAGACGCAGAGATGCAGCACACCGGGCCTATGGTGGCGGTTTACC
TAGACAACGAATCCGTGGAAAAGCTGCACCGAGAGTACCCGGGCGCTAAC
CCCGGGCGGCTGAGGAAAGCGGTGATCCAGTACAACCCTTCCGCTGATCA
GCGCAGCTTGTATGAAAGGCACTTCGGTGGCTCGGCTACAGTCAAGTCAG
CAGAAAAGCCCGATGGATCAACCACGCCTGCGCCAACACCAACACCAGCA
CCAGACGCAGAGATGCAGCACACCGGGCCTATGGTGGCGGTTTACCTAGA
CAACGAATCCGTGGAAAAGCTGCACCGAGAGTACCCGGGCGCTAACCCCG
GGCGGCTGAGGAAAGCGGTGATCCAGTACAACCCTTCCGCTGATCAGCGC
AGCTTGTATGAAAGGCACTTCGGTGGCTCGGCTACAGTCAAGTTAACCGG
CGAAGCTTCCAGCGAAAACCGCCTTGCCCTGACGGCTTCGGTGTCTAGTG
CCGGGGGCTCCGTGGAGCCGCAGTCTCTGTCCTGCGCCGTGGACGTAACC
CCGGGGGGTGTGGGTGGAGGTCCCCTAGGCAGCACGGTCCTCATCGAGCA
GATCAAGCGGGCTGGGGCACTCACGGAGTTAACCGGCGAAGCTTCCAGCG
AAAACCGCCTTGCCCTGACGGCTTCGGTGTCTAGTGCCGGGGGCTCCGTG
GAGCCGCAGTCTCTGTCCTGCGCCGTGGACGTAACCCCGGGGGGTGTGGG
TGGAGGTCCCCTAGGCAGCACGGTCCTCATCGAGCAGATCAAGCGGGCTG
GGGCACTCACGGAGGAATCGTGGAAAGGTCAGCTTCCCGCCCTTTCGGCC
CACGAAAGAGACTTCTCGACCGAGGAGGGCAGCTTCAACAAACTAGACGA
GCCCCTCACTCTCCAGGGCTCAATTTGCCGAGCGGATTGGGTGGAAGGCA
AGAGCGGCTTTTGCCGAACCACGGCCGAAGGAGGGGGGAAGCGAGAGGAC
GGATGGACGCCCCAGGTCTGCCCCATGTGCAACACGTTCGAAGCTAGTCC
GTGCCGAGATATTTACAAAATGAATCGTGGAAAGGTCAGCTTCCCGCCCT
TTCGGCCCACGAAAGAGACTTCTCGACCGAGGAGGGCAGCTTCAACAAAC
TAGACGAGCCCCTCACTCTCCAGGGCTCAATTTGCCGAGCGGATTGGGTG
GAAGGCAAGAGCGGCTTTTGCCGAACCACGGCCGAAGGAGGGGGGAAGCG
AGAGGACGGATGGACGCCCCAGGTCTGCCCCATGTGCAACACGTTCGAAG
CTAGTCCGTGCCGAGATATTTACAAAATATTCGATAGAATGTCCAAGAGA
ATAAACGAGCTCCAACCGCCGAAAGAGTCTGAGAGTCAGAGTCAGAATCC
TTCCGCCGAAAGTTCTTCAGGAACTCCCTCAGAAGCTTCCTCTGCAGAAG
ACAACGAACGAGGTGCTTTCAAGAACGAATCGCGATCTGAGAGCAATGAT
GCCGCTGAAAAGTCTAGCCTCGGCGGTGAAAACGCGATTTCGAGCGGAGA
AGGGAAAGGCAGCATAGAGGGTAAGAGTAAGGGCAAAGGTCCCCAGGAGA
GCAAAGGCGAAGAGCCGGAGACGGAGACGGAAGATGAGAAGCTGCGACGG
GAGGAGGTGGACATGCTAAAGTTCAAGAGGGTTTCGATCATGCAAGAGAT
GCTCACGTGCTCGCAGTTCCACCACGTGTTTGAGGACTTGAATGCTGACG
ATGGATTGGTGCCGGGCATGCCTGATGAGGAGGTAGAGGGCGGTGAAGAC
GCGACCTCTGGGACGGGCAGTGGGGCCGGGGAGGGCGAAAGTAGCGGCAT
TCGATAGAATGTCCAAGAGAATAAACGAGCTCCAACCGCCGAAAGAGTCT
GAGAGTCAGAGTCAGAATCCTTCCGCCGAAAGTTCTTCAGGAACTCCCTC
AGAAGCTTCCTCTGCAGAAGACAACGAACGAGGTGCTTTCAAGAACGAAT
CGCGATCTGAGAGCAATGATGCCGCTGAAAAGTCTAGCCTCGGCGGTGAA
AACGCGATTTCGAGCGGAGAAGGGAAAGGCAGCATAGAGGGTAAGAGTAA
GGGCAAAGGTCCCCAGGAGAGCAAAGGCGAAGAGCCGGAGACGGAGACGG
AAGATGAGAAGCTGCGACGGGAGGAGGTGGACATGCTAAAGTTCAAGAGG
GTTTCGATCATGCAAGAGATGCTCACGTGCTCGCAGTTCCACCACGTGTT
TGAGGACTTGAATGCTGACGATGGATTGGTGCCGGGCATGCCTGATGAGG
AGGTAGAGGGCGGTGAAGACGCGACCTCTGGGACGGGCAGTGGGGCCGGG
GAGGGCGAAAGTAGCGGC
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