mRNA_C-linearis_contig99.17162.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig99.17162.1
Unique NamemRNA_C-linearis_contig99.17162.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig99.17162.1 vs. uniprot
Match: D7G7V3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7V3_ECTSI)

HSP 1 Score: 510 bits (1313), Expect = 1.690e-175
Identity = 273/410 (66.59%), Postives = 318/410 (77.56%), Query Frame = 2
Query:   95 LVASPIAFRPVALTLRFASSSRDRLHLTRHXXXXXXXXXACYRTSSGRSSTRSSATLQRSLPILGVDAGFGLASVSALGALRLLGSTAVAPKRVRVVTDIDDTVKSSGNKRLFGVPLGGIDAQYSRGVFYPGVFQFSLELSRHRVPSWQEPLSVAVLTARAREFLFALEIGDTHEISKQFRLCGDRNGLKGWGRGPVLYGSVKEWICPSRKSERKAKNFGFLLEDDGRGGRRRPSGAEGGYIFIGDTGEGDPLAGEIMISKYPDRMKAVFLHVVSDAPRQGKVSLPMDRVVSGVPVVYFRTYVGAAAKAVELGLMNKSGLDNVITAAKEAMVKIPPKSSKWVDMNRDLLLARIAGKRQQLPSMGVEALTLTQHGGALAPKISHILKRSGPTXXXXXXXXXXXAAATKARP 1324
            LVASP AFRP++    F           R+         +   +S+G         LQR+  +LG+DAG G+A +SAL A+RL  + ++ PKRVRVVTDIDDTVKSSGNKRLFGVPLGGIDAQY RGVFYPGVFQFSLELSR+RVPSWQEPLSVAVLTARAREFLFALEIGDTHEI+++FR CG+RNG+K WGRGPVLYGSVKEW+CPSRKSERKA+NFGFLLEDD +GGR RPSGAEGGYIFIGDTGEGDP AGEIM +++PDRM+AVFLHVVSD P+QGKV +PMDRVV+ VPVVYFRTYVGAA KAVELGLM+K GL+NVITAAKEAM K+P +SSKW D+NRDL++A+ +    QLPS+GV+ LT +    AL  KI+   KR+G              AATK RP
Sbjct:   14 LVASPRAFRPLSQPCCFR----------RYLNGDKWSISSTSCSSTGNVGRERLQPLQRAASMLGMDAGLGVAGLSALSAVRLF-TASITPKRVRVVTDIDDTVKSSGNKRLFGVPLGGIDAQYRRGVFYPGVFQFSLELSRYRVPSWQEPLSVAVLTARAREFLFALEIGDTHEITREFRQCGERNGIKKWGRGPVLYGSVKEWVCPSRKSERKARNFGFLLEDDEKGGRGRPSGAEGGYIFIGDTGEGDPRAGEIMSAEHPDRMRAVFLHVVSDGPQQGKVPVPMDRVVNAVPVVYFRTYVGAAVKAVELGLMDKKGLENVITAAKEAMTKVPRQSSKWEDINRDLMMAQTS--ETQLPSIGVKTLT-SALDDALGSKIN--TKRNGAVRRRPPVT----TAATKKRP 403          
BLAST of mRNA_C-linearis_contig99.17162.1 vs. uniprot
Match: A0A835YMG4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMG4_9STRA)

HSP 1 Score: 274 bits (700), Expect = 3.230e-85
Identity = 148/258 (57.36%), Postives = 177/258 (68.60%), Query Frame = 2
Query:  374 VRVVTDIDDTVKSSGNKRLFGV-PLGGIDAQYSRGVFYPGVFQFSLELSRHRVPSWQEPLSVAVLTARAREFLFALEIGDTHEISKQFRLCGDRNGLKGWGRGPVLYGSVKEWICPSRKSERKAKNFGFLLEDDGRGGRRRPSGAEGGYIFIGDTGEGDPLAGEIMISKYPDRMKAVFLHVVSDAPRQGKVSLPMDRVVSGVPVVYFRTYVGAAAKAVELGLMNKSGLDNVITAAKEAMVK--IPPKSSKWVDMNRDL 1138
            +RVVTDIDDTVKSSGN RL GV PLGGIDAQY RG FYPGVFQF LEL+ H VP    PL +AVLTARA+E LFALE+   H +S  +R CG  NG++GWG GP+LYGSVKEWIC +RKS RK KNF  L+E DGR    R    E  Y+FIGDTGEGD  AG  M   +P  ++A+FLH+V       KV  P D  V+GVPV++F+TYVGAA KA E GL+N+  ++ VI  A E +     P  SSKW D+  D+
Sbjct:    3 LRVVTDIDDTVKSSGNLRLAGVIPLGGIDAQYERGQFYPGVFQFGLELAAHGVPRGLMPLPIAVLTARAKELLFALELDMEHPVSVAYRQCGAENGMEGWGLGPILYGSVKEWICWTRKSRRKVKNFRRLMELDGRNAIARGYMTE--YVFIGDTGEGDFKAGIKMCENFPRELRALFLHMVYCVDDVCKV--PEDYAVNGVPVLFFKTYVGAARKAYEAGLLNRYAVERVIAKAVEELEYSGAPRTSSKWSDLEADI 256          
BLAST of mRNA_C-linearis_contig99.17162.1 vs. uniprot
Match: A0A7S4CYL7_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4CYL7_9EUGL)

HSP 1 Score: 268 bits (685), Expect = 5.360e-80
Identity = 138/263 (52.47%), Postives = 181/263 (68.82%), Query Frame = 2
Query:  374 VRVVTDIDDTVKSSGNKRLFGVPLGGIDAQYSRGVFYPGVFQFSLELSRHRVPSWQEPLSVAVLTARAREFLFALEIGDTHEISKQFRLCGDRNGLKGWGRGPVLYGSVKEWICPSRKSERKAKNFGFLLEDDGRGGRRRPSGAEGGYIFIGDTGEGDPLAGEIMISKYPDRMKAVFLHVVSDAPRQGKVSLPMDRVVSGVPVVYFRTYVGAAAKAVELGLMNKSGLDNVITAAKEAMVKIPPKS----SKWVDMNRDLLLAR 1150
            ++V+TDIDDTVKSSG  +  G+PLGGID QY RG+FYPGVF+F LEL+ +     + PLSVAVLTARAREFLFALE+ ++H I K FR  G  +G + WG G VLYGSV+EW+C  RKS RK +NF  LL          P  A   ++F+GDTGE D  AGEIM+ ++P  M+A+FLHVV+  P      LP D++++G PVV+FRTYVGAA KAV+ GL+   GL  V+ AA+  + +I P+S    S+W D+NRD+ L +
Sbjct:  215 LQVITDIDDTVKSSGGVKFGGIPLGGIDTQYRRGLFYPGVFRFMLELASYATT--EAPLSVAVLTARAREFLFALELDESHAICKAFRDTGRASGHEDWGIGEVLYGSVQEWVCQGRKSWRKVENFKLLLSS-------LPPDAARRFVFVGDTGELDQEAGEIMLEEFPSCMQALFLHVVAPDPALVPAPLPRDKLINGAPVVFFRTYVGAARKAVKYGLLGVDGLAAVVEAARADLERIEPESAGGSSRWADLNRDIALCQ 468          
BLAST of mRNA_C-linearis_contig99.17162.1 vs. uniprot
Match: A0A835YPL0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPL0_9STRA)

HSP 1 Score: 261 bits (668), Expect = 6.030e-80
Identity = 143/256 (55.86%), Postives = 169/256 (66.02%), Query Frame = 2
Query:  380 VVTDIDDTVKSSGNKRLFG-VPLGGIDAQYSRGVFYPGVFQFSLELSRHRVPSWQEPLSVAVLTARAREFLFALEIGDTHEISKQFRLCGDRNGLKGWGRGPVLYGSVKEWICPSRKSERKAKNFGFLLEDDGRGGRRRPSGAEGGYIFIGDTGEGDPLAGEIMISKYPDRMKAVFLHVVSDAPRQGKVSLPMDRVVSGVPVVYFRTYVGAAAKAVELGLMNKSGLDNVI--TAAKEAMVKIPPKSSKWVDMNRDL 1138
            VVTDIDDTVKSSGN RL G +PLGGIDAQY RG FYPGVFQF+LEL+ H  P    PL VAVLTARA+EFLFALE+   H +S  +R CG  NG  GWG GPVLYGSVKEWI  +RK  RK KNF  L+E DG     R  G    YIFIGDTGEGD  AG  M   +P  ++A+F+H VS          P D  ++GVPV++F+TYVGAA KA E GLM+K+G+  VI  +  +  +   P   SKW DM  D+
Sbjct:   38 VVTDIDDTVKSSGNLRLAGLIPLGGIDAQYERGQFYPGVFQFALELAAHGTPQGLLPLPVAVLTARAKEFLFALELKTEHPVSIAYRQCGTDNGFDGWGLGPVLYGSVKEWIVWTRKGRRKFKNFKRLMEIDGTHAAAR--GCATDYIFIGDTGEGDTKAGVKMCETFPRELRAMFMHAVSCDSEY--CITPDDYTINGVPVLFFKTYVGAARKAYEAGLMDKAGVQRVIDRSVMELELSGAPRDCSKWEDMEMDI 289          
BLAST of mRNA_C-linearis_contig99.17162.1 vs. uniprot
Match: A0A6V2PZW2_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2PZW2_9STRA)

HSP 1 Score: 254 bits (648), Expect = 1.760e-76
Identity = 134/268 (50.00%), Postives = 177/268 (66.04%), Query Frame = 2
Query:  377 RVVTDIDDTVKSSGNKRLFGVPLGGIDAQYSRGVFYPGVFQFSLELSRHRV---PSWQE-----------PLSVAVLTARAREFLFALEIGDTHEISKQFRLCGDRNGLKGWGRGPVLYGSVKEWICPSRKSERKAKNFGFLLEDDGRGGRRRPSGAEGGYIFIGDTGEGDPLAGEIMISKYPDRMKAVFLHVVSDAPRQGKVSLPMDRVVSGVPVVYFRTYVGAAAKAVELGLMNKSGLDNVITAAKEAMVKIPPKSSKWVDMNRDL 1138
            +V++D+DDT+KSSG   + GV LGGID QY RG FYPGVFQF LELS H++   P+  E           P  VAVLTARA EF  ALE+    +++K FR  G++ G++ WG GPVLYGSV EW+   RK  RK  NF  L+E D       P+G    Y+++GDTGE D  AGE M+ +YP+ +KAVFLHVVSDAP      +P  ++++G P+V+FRTYVGAAAKAV+LGLM + GL  VI  A+ A+  +P  + KW+D+ RD+
Sbjct:   62 QVISDVDDTLKSSGGVNVAGVALGGIDVQYERGDFYPGVFQFMLELSMHKLGEGPNESEGDDTGEEDRLYPPKVAVLTARAEEFKVALELKGNSKLAKAFRKTGEKAGIEDWGLGPVLYGSVAEWVIQDRKGLRKFSNFERLIEQD-------PTGTIMQYVYVGDTGELDQEAGETMLREYPEVVKAVFLHVVSDAPFP---RIPPPKLINGRPIVFFRTYVGAAAKAVQLGLMYEEGLMRVIVEAEAALEGVPRSNEKWLDLERDI 319          
BLAST of mRNA_C-linearis_contig99.17162.1 vs. uniprot
Match: W7UBU9_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7UBU9_9STRA)

HSP 1 Score: 252 bits (643), Expect = 1.070e-74
Identity = 130/236 (55.08%), Postives = 162/236 (68.64%), Query Frame = 2
Query:  374 VRVVTDIDDTVKSSGNKRLFGVPLGGIDAQYSRGVFYPGVFQFSLELSRHRVPSWQEPLSVAVLTARAREFLFALEIGDTHEISKQFRLCGDRNGLKGWGRGPVLYGSVKEWICPSRKSERKAKNFGFLLEDDGRGGRRRPSGAEGGYIFIGDTGEGDPLAGEIMISKYPDRMKAVFLHVVSDAPRQGKVSLPMDRVVSGVPVVYFRTYVGAAAKAVELGLMNKSGLDNVITAAKE 1081
            ++V+TDIDDTVKSSG  RL G+ LGGID QY RG +YPG FQF+LELSR  VP  +EP  VAVLTARAREF FALE+  +H++ + +   G  NG++GWG G VLYGSVKEW+C SRK  RK +NF  L   D      R    +  Y+F+GDTGE D  AGE MI KYP R+KA+F+H VS++  +     P DR +  VPV+YFRTYVGAA KA ELGL+  SG++ V+    E
Sbjct:  106 LQVITDIDDTVKSSGGLRLMGMALGGIDTQYKRGQYYPGAFQFALELSRFGVPEGREPARVAVLTARAREFKFALELKPSHKVCRTYAAAGANNGVEGWGVGTVLYGSVKEWVCQSRKGLRKFRNFEALRAQD------RLDRTD--YVFVGDTGELDLQAGESMIRKYPSRIKALFMHYVSES--RPSPPPPRDRTLLDVPVIYFRTYVGAAVKAAELGLLGPSGVEAVVARTLE 331          
BLAST of mRNA_C-linearis_contig99.17162.1 vs. uniprot
Match: A0A7S2IAS8_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IAS8_9STRA)

HSP 1 Score: 248 bits (634), Expect = 2.940e-74
Identity = 131/267 (49.06%), Postives = 174/267 (65.17%), Query Frame = 2
Query:  377 RVVTDIDDTVKSSGNKRLFGVPLGGIDAQYSRGVFYPGVFQFSLELSRHRVPSWQE-------------PLSVAVLTARAREFLFALEIGDTHEISKQFRLCGDRNGLKGWGRGPVLYGSVKEWICPSRKSERKAKNFGFLLEDDGRGGRRRPSGAEGGYIFIGDTGEGDPLAGEIMISKYPDRMKAVFLHVVSDAPRQGKVSLPMDRVVSGVPVVYFRTYVGAAAKAVELGLMNKSGLDNVITAAKEAMVKIPPKSSKWVDMNRDL 1138
            +V++D+DDT+KSSG   + GV LGGID QY+RG FYPGVFQF LELS   + +  +             P  VAVLTARA EF  ALE+    +++K FR  G++ G+  WG GPVLYGSV EW+   RK  RK  NF  L+E D       P+G    Y+++GDTGE D  AGE M+ +YP+ +KAVFLHVVSDAP      +P  ++++G PVV+FRTYVGAAA+AV+LGLM + GL  VI  A+ A+  +P  + KW+D+ RD+
Sbjct:   74 QVISDVDDTLKSSGGVTVAGVALGGIDIQYTRGEFYPGVFQFMLELSMPTLDNDDDENDTENEKSQFLYPPKVAVLTARAEEFKVALELKGNSKLAKAFRKTGEKAGIDDWGLGPVLYGSVAEWVIQDRKGMRKFSNFERLIEQD-------PTGTIMQYVYVGDTGELDQEAGETMLREYPEVVKAVFLHVVSDAPFP---RVPPPKLINGRPVVFFRTYVGAAARAVQLGLMQEEGLMRVIVEAEAALKGVPTSNEKWLDLERDI 330          
BLAST of mRNA_C-linearis_contig99.17162.1 vs. uniprot
Match: A0A7S3A3W7_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A3W7_9RHOD)

HSP 1 Score: 248 bits (633), Expect = 1.040e-73
Identity = 132/272 (48.53%), Postives = 178/272 (65.44%), Query Frame = 2
Query:  365 PKRVRVVTDIDDTVKSSGNKRLFGVPLGGIDAQYSRGVFYPGVFQFSLELSRHRVPSWQEPLSVAVLTARAREFLFALEIGDTHEISKQFRLCGDRNGLKGWGRGPVLYGSVKEWICPSRKSERKAKNFGFLLEDDGRGGRRRPSGAEGGYIFIGDTGEGDPLAGEIMISKYPDRMKAVFLHVVSDAPRQGKVSLPMDRVVSGVPVVYFRTYVGAAAKAVELGLMNKSGLDNVITAAKEAMVKIPP--KSSKWVDMNRDLLLARIAGKRQQL 1174
            P+R++V+TDIDDTVKSSG  R+ G  LGGID+QY RG  YPGVFQF+LE++   +P   EPL +AVLTARARE  FAL + + H I +++R CG   G   WG GPVLYGSVKEW+  S+K  RK +NF  LL +          G +  YI++GDTGE D  AG++M+ KYP  MKAVFLHVV +      +    D  V  VPV++FRTYVGAA KAVE G+++++ +  V   A + +++I P   SSKWVD+ +D+  + +  +R  L
Sbjct:  100 PERIQVITDIDDTVKSSGGLRVAGQYLGGIDSQYKRGDCYPGVFQFALEIATSGLPEDVEPLPMAVLTARARELKFALALEEHHPICRKYRYCGMERGFDDWGIGPVLYGSVKEWLFQSKKGVRKFRNF-QLLHNYNASNCGVGIGCQTKYIYVGDTGELDLHAGKLMLQKYPSEMKAVFLHVVYNERDDPALKSYEDTHVKNVPVLFFRTYVGAARKAVEHGIISEAAMRRVAAKALKELLRIEPDHSSSKWVDLRKDIKDSDLVPRRHWL 370          
BLAST of mRNA_C-linearis_contig99.17162.1 vs. uniprot
Match: A0A7S0UKK8_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UKK8_9STRA)

HSP 1 Score: 244 bits (624), Expect = 3.250e-73
Identity = 127/259 (49.03%), Postives = 171/259 (66.02%), Query Frame = 2
Query:  377 RVVTDIDDTVKSSGNKRLFGVPLGGIDAQYSRGVFYPGVFQFSLELSRHRVPSWQEPLSVAVLTARAREFLFALEIGDTHEISKQFRLCGDRNGLKGWGRGPVLYGSVKEWICPSRKSERKAKNFGFLLEDDGRGGRRRPSGAEGGYIFIGDTGEGDPLAGEIMISKYPDRMKAVFLHVVSDAPRQGKVSLPMDRVVSGVPVVYFRTYVGAAAKAVELGLMNKSGLDNVITAAKEAMVKIPPKSSKWVDMNRDLLLARI 1153
            +V++D+DDT+KSSG   + GV LGGID QY RG FYPGV +F L LS+  +     P ++A+LTARA EF  ALEI +  +++   R  G++ G+ GWG GPVLYGSV EWI   RK  RK  NF  L+E D       P+G    YI++GDTGE D  AGE M+ +YP+ MKAVFLHVV+D   +G   +P  ++++G PV++FRTYVGAA  AV+LGLM+  GL +VI AA E +  +P  S KW D+ +D+  A +
Sbjct:   55 QVISDVDDTLKSSGGVSVGGVALGGIDVQYDRGDFYPGVGEFMLALSQCGLTEEVNPANIAILTARAEEFKAALEIKEGSKLAVALRSAGEKVGINGWGVGPVLYGSVAEWIAQDRKGLRKFTNFERLIEQD-------PTGTIFQYIYVGDTGELDQEAGETMLREYPEVMKAVFLHVVTDDV-EGPPLIPPPKLINGHPVIFFRTYVGAAIDAVQLGLMSLDGLQSVIEAATEKLSDVPENSDKWKDIRKDMARADV 305          
BLAST of mRNA_C-linearis_contig99.17162.1 vs. uniprot
Match: A0A1E7FEW2_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FEW2_9STRA)

HSP 1 Score: 243 bits (621), Expect = 1.350e-72
Identity = 128/261 (49.04%), Postives = 171/261 (65.52%), Query Frame = 2
Query:  377 RVVTDIDDTVKSSGNKRLFGVPLGGIDAQYSRGVFYPGVFQFSLELSRHRVPSWQE--PLSVAVLTARAREFLFALEIGDTHEISKQFRLCGDRNGLKGWGRGPVLYGSVKEWICPSRKSERKAKNFGFLLEDDGRGGRRRPSGAEGGYIFIGDTGEGDPLAGEIMISKYPDRMKAVFLHVVSDAPRQGKVSLPMDRVVSGVPVVYFRTYVGAAAKAVELGLMNKSGLDNVITAAKEAMVKIPPKSSKWVDMNRDLLLARI 1153
            +V++D+DDT+KSSG   + GV LGGID QY RG FYPGV +F L+LS +++       P ++A+LTARA EF  ALEI D  ++S   R  G++ G++GWG GPVLYGSV EWI   RK  RK  NF  L++ D       P+G    YI++GD GE D  AGE M+ +YP+ +KAVFLHVV+D      + +P  + ++G P+V+FRTYVGAA  AV+LGLMN  GL +VI AA E +  +P  S KW D+ +DL  A I
Sbjct:   63 QVISDVDDTLKSSGGVNVGGVALGGIDVQYGRGDFYPGVAEFMLQLSLYKLLQQDSNYPANIAILTARAEEFKAALEIKDGSKLSIALRSAGEKAGIEGWGVGPVLYGSVAEWIIQDRKGLRKFTNFERLMQQD-------PAGVIFQYIYVGDVGELDQEAGETMVREYPEVVKAVFLHVVTDQADVPPI-IPAPKFINGRPIVFFRTYVGAAVDAVQLGLMNLDGLQSVINAAIEKLSDVPETSDKWKDIRKDLSRAEI 315          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig99.17162.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7V3_ECTSI1.690e-17566.59Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YMG4_9STRA3.230e-8557.36Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A7S4CYL7_9EUGL5.360e-8052.47Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A835YPL0_9STRA6.030e-8055.86Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6V2PZW2_9STRA1.760e-7650.00Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
W7UBU9_9STRA1.070e-7455.08Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S2IAS8_9STRA2.940e-7449.06Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S3A3W7_9RHOD1.040e-7348.53Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S0UKK8_9STRA3.250e-7349.03Hypothetical protein n=1 Tax=Pseudo-nitzschia deli... [more]
A0A1E7FEW2_9STRA1.350e-7249.04Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig99contigC-linearis_contig99:259211..262375 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score508.8
Seed ortholog evalue2.4e-141
Seed eggNOG ortholog2880.D7G7V3
Hectar predicted targeting categoryother localisation
EggNOG OGs2AJYC@1,2RZ89@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-06_000190.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size1651
Cds size1284
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig99.17162.1prot_C-linearis_contig99.17162.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig99 259254..262051 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930848.4128797-UTR-C-linearis_contig99:259210..2592531622930848.4128797-UTR-C-linearis_contig99:259210..259253Chordaria linearis ClinC8C monoicousUTRC-linearis_contig99 259211..259253 +
1690881280.803522-UTR-C-linearis_contig99:259210..2592531690881280.803522-UTR-C-linearis_contig99:259210..259253Chordaria linearis ClinC8C monoicousUTRC-linearis_contig99 259211..259253 +
1622930848.487266-UTR-C-linearis_contig99:262051..2623751622930848.487266-UTR-C-linearis_contig99:262051..262375Chordaria linearis ClinC8C monoicousUTRC-linearis_contig99 262052..262375 +
1690881280.8531957-UTR-C-linearis_contig99:262051..2623751690881280.8531957-UTR-C-linearis_contig99:262051..262375Chordaria linearis ClinC8C monoicousUTRC-linearis_contig99 262052..262375 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930848.4302008-CDS-C-linearis_contig99:259253..2596741622930848.4302008-CDS-C-linearis_contig99:259253..259674Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 259254..259674 +
1690881280.8169954-CDS-C-linearis_contig99:259253..2596741690881280.8169954-CDS-C-linearis_contig99:259253..259674Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 259254..259674 +
1622930848.4481566-CDS-C-linearis_contig99:260878..2614951622930848.4481566-CDS-C-linearis_contig99:260878..261495Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 260879..261495 +
1690881280.8280904-CDS-C-linearis_contig99:260878..2614951690881280.8280904-CDS-C-linearis_contig99:260878..261495Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 260879..261495 +
1622930848.4693465-CDS-C-linearis_contig99:261805..2620511622930848.4693465-CDS-C-linearis_contig99:261805..262051Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 261806..262051 +
1690881280.8420088-CDS-C-linearis_contig99:261805..2620511690881280.8420088-CDS-C-linearis_contig99:261805..262051Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 261806..262051 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig99.17162.1

>prot_C-linearis_contig99.17162.1 ID=prot_C-linearis_contig99.17162.1|Name=mRNA_C-linearis_contig99.17162.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=428bp
MRCSTGAGRLTAFVMSTLVASPIAFRPVALTLRFASSSRDRLHLTRHHLH
PHHLLPACYRTSSGRSSTRSSATLQRSLPILGVDAGFGLASVSALGALRL
LGSTAVAPKRVRVVTDIDDTVKSSGNKRLFGVPLGGIDAQYSRGVFYPGV
FQFSLELSRHRVPSWQEPLSVAVLTARAREFLFALEIGDTHEISKQFRLC
GDRNGLKGWGRGPVLYGSVKEWICPSRKSERKAKNFGFLLEDDGRGGRRR
PSGAEGGYIFIGDTGEGDPLAGEIMISKYPDRMKAVFLHVVSDAPRQGKV
SLPMDRVVSGVPVVYFRTYVGAAAKAVELGLMNKSGLDNVITAAKEAMVK
IPPKSSKWVDMNRDLLLARIAGKRQQLPSMGVEALTLTQHGGALAPKISH
ILKRSGPTTTTTRRRSSLVAAATKARP*
back to top

mRNA from alignment at C-linearis_contig99:259211..262375+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig99.17162.1 ID=mRNA_C-linearis_contig99.17162.1|Name=mRNA_C-linearis_contig99.17162.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3165bp|location=Sequence derived from alignment at C-linearis_contig99:259211..262375+ (Chordaria linearis ClinC8C monoicous)
CCGACAGCTGCTGGCTGCTAGTAAGTGTGGGTGTTTCGACGCCATGCGCT GTTCGACAGGTGCCGGGCGGTTGACCGCTTTTGTTATGAGCACCCTCGTG GCATCTCCGATAGCGTTTCGGCCCGTAGCTCTCACTCTGCGCTTCGCCAG CAGCAGCAGAGACCGCCTGCACCTGACAAGGCATCACCTTCACCCGCACC ACCTTCTTCCGGCGTGCTACCGCACGAGCAGCGGTCGTAGTAGCACTAGA AGCTCCGCGACTTTGCAACGATCGTTACCAATACTCGGTGTTGATGCTGG GTTTGGGCTAGCAAGCGTCAGCGCTCTGGGCGCCCTGAGACTCTTGGGTT CAACTGCTGTCGCCCCGAAACGAGTTCGGGTCGTGACGGACATCGACGAC ACCGTCAAGTCCAGCGGGAATAAGCGTTTGTTCGGAGTACCGCTGGGTGG GATCGACGCTCAATGTGAGAAAAAAGGGAGGGGATTGCGGCTCGAGAAGA AAAAAACAACGGCTCCAAACACAAACGCCAGTGGTGCACTGCTGCTGTAT GCGGTATGTAGTGAACATTGATGATGCACAGCCGTTGACGAGTGTTATTA TACTCTCGTGTGTACTCTGTACGGTCCTGTCCGCATCCTTCCTTGGGCGG GTAATCAAGGGTGCCTTCGACGGTTGCCTTACCCTGGAAAACCTTATATC TTCCGTATATGCCACGTTGTCTCGCGTAGCGGGGCAGGCAGCCCATGATG TACATACTCTGACGCAAACAAGTCTAAAAACAGCGAATCGTCGGAGGGGG GTGAACGATCATGTAACGGAGCATGAAGGTGTTACAACGAAAGAGGCGGG TTCAAACAACCAGAGAGCAACTAGTCTTTATTGTACAACTTCGGCCGAAG TGCGGAGTGCATTCTGTCGAGTCGGAATACGAGTCAGCGTAATTCCAAAT AACCCCAGTTGAAATGTACAGCCGCTGTGCTGGTCTTCAACCATTGCATG CGCCTCCAAAGCAGCCCGGCTGTATGTGTTCGCGTCCAAGCCAGTGTATT GTTGGTTGGGGCAAACACCCATGGTGTGAGGCGCCGGGGCGTTGATCCAG GTAGTCACCTGCCCGCTCTACCAACAATGGACCGAAAAGTATGCTTCATG ATCACGAAAGCCTTAACATGGCAGCTTTCAGCTCCCCGCTGCTGTTGCCC ACGACATGCGACGGCTCCTGCACGCCCTGTATCAGTTGGCCTTCCAAGCG ACGTGCGCAGTTTTTTGCTTGTCTGATCTCATGAACACCAAACTGTCAGT TGACCGTGCGTAAGAAATAAATTGCAACTCTGAAAAGCGTACAAATTGGA CCTTGATGCACGCACATCTCCACCACATCTCCACCTCCCCGACCGCTTCA AACAAGCTGCGGATGACCAATCTGTAGAGAACTGCGAGCTGTTGTGGATC AAACACTCGAGGATAGACACAGGGCGTGAGACTGCCCGCCCTTTAGGGGC GAGCTGGTGGGACACTTAACGCATCCCCGACAGCTCGCACGGTACATACC ACAACCCGGTAGGGTGACGACAGACAGCAGTCCTACGCACGCGTGTGTCT CGCTCGAGCCTTGTGACGACGCGGTCCGTTCCTTTGCTGCTTGCAACCCC TCCGCCCACCCCGACCAGATAGCAGAGGTGTGTTTTACCCAGGGGTGTTC CAGTTTTCCCTGGAGCTGTCGCGGCATCGCGTGCCTTCGTGGCAAGAGCC GCTATCCGTGGCGGTGCTGACTGCGAGAGCAAGAGAGTTCCTGTTCGCGC TTGAGATCGGCGACACGCACGAGATCTCCAAGCAGTTCCGACTATGCGGG GATCGCAACGGGCTCAAGGGGTGGGGGCGGGGACCGGTGCTGTACGGAAG CGTCAAGGAGTGGATCTGTCCCAGCCGAAAGAGCGAGAGAAAAGCCAAGA ACTTTGGGTTCCTCCTGGAAGACGACGGGCGAGGAGGCCGACGTCGACCC AGCGGGGCCGAGGGTGGTTACATTTTCATCGGAGACACCGGCGAGGGCGA TCCGCTCGCCGGGGAGATCATGATCTCCAAGTACCCCGATAGGATGAAGG CGGTGTTTCTTCACGTGGTGAGTGATGCCCCCCGTCAGGGGAAGGTGAGC TTGCCGATGGATCGTGTGGTGAGCGGTGTGCCGGTGGTGTACTTTCGGAC ATACGTCGGGGCAGCAGCGAAAGCCGTGGAGCTGGGTTTGATGAACAAGT CGGGGCTGGATAACGTCATCACCGCTGCAAAGGAGGTGAAATATTGACAA CGAAGTTTTTTAGCTCTCTGACGTGTTCCTCTGTAAGCGTGCACTAAATA TACGATCGATTTCGTGCCGGAAATAGCGTGAAGAAAGCGACGGCGTGTTT TTTGGTTCGGCGATGAAGCGGTCGCATCGCATGCAGTTGCAGTCGAGGGC CCAATGCAGATGCAGCATCGTTCGAAATCCAACACAAGTATGTGCACTGC TTGCGTGACCAATGGTCGCGTCCGAACCTCGTCACAGCAATTGACTCGTT TAACTTTTAACGTTTTTTGTCCTGCGTGTTGCGGCGTGTGTCTAGGCGAT GGTGAAGATTCCGCCAAAGTCGTCCAAGTGGGTGGACATGAACAGGGATC TCCTCTTGGCGCGGATTGCAGGAAAGCGTCAACAGCTGCCCTCCATGGGC GTAGAAGCTCTCACCTTGACACAACATGGCGGCGCTTTGGCGCCAAAGAT CAGTCATATTTTGAAGCGTAGCGGCCCCACTACTACAACAACTAGACGGC GATCCTCTCTTGTCGCCGCAGCGACCAAGGCTCGTCCATGACGGAATGGG GATGGGAAGACAAGGCTTGGATTTGTACATCCCGCTGCAGTTCAGCTGCG TTAGAAAAATAGCTTTGTCGATACGTCGGTGGAGGCAAGCCGCACGCATG AGAAATAGGCGAATAATCAGCTCTTGTGATATTTCTCCGGTTGAGCATGA GAAATTTGCGAGCGTAGCCTGTTGCGCGCATGTGCATTGTGGATGGGTTC ACTGGCCTGCTGCTGGTGTTGACAACGCCAGGTGTTTAGACACTAATTGT ACTAATCGAGGTTTTGTTCCCACGGTCGCCTCAACCTCGCTGGCTGGAAA GTAATCCCTTCGAAG
back to top

Coding sequence (CDS) from alignment at C-linearis_contig99:259211..262375+

>mRNA_C-linearis_contig99.17162.1 ID=mRNA_C-linearis_contig99.17162.1|Name=mRNA_C-linearis_contig99.17162.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2568bp|location=Sequence derived from alignment at C-linearis_contig99:259211..262375+ (Chordaria linearis ClinC8C monoicous)
ATGCGCTGTTCGACAGGTGCCGGGCGGTTGACCGCTTTTGTTATGAGCAC
CCTCGTGGCATCTCCGATAGCGTTTCGGCCCGTAGCTCTCACTCTGCGCT
TCGCCAGCAGCAGCAGAGACCGCCTGCACCTGACAAGGCATCACCTTCAC
CCGCACCACCTTCTTCCGGCGTGCTACCGCACGAGCAGCGGTCGTAGTAG
CACTAGAAGCTCCGCGACTTTGCAACGATCGTTACCAATACTCGGTGTTG
ATGCTGGGTTTGGGCTAGCAAGCGTCAGCGCTCTGGGCGCCCTGAGACTC
TTGGGTTCAACTGCTGTCGCCCCGAAACGAGTTCGGGTCGTGACGGACAT
CGACGACACCGTCAAGTCCAGCGGGAATAAGCGTTTGTTCGGAGTACCGC
TGGGTGGGATCGACGCTCAATATGCGCTGTTCGACAGGTGCCGGGCGGTT
GACCGCTTTTGTTATGAGCACCCTCGTGGCATCTCCGATAGCGTTTCGGC
CCGTAGCTCTCACTCTGCGCTTCGCCAGCAGCAGCAGAGACCGCCTGCAC
CTGACAAGGCATCACCTTCACCCGCACCACCTTCTTCCGGCGTGCTACCG
CACGAGCAGCGGTCGTAGTAGCACTAGAAGCTCCGCGACTTTGCAACGAT
CGTTACCAATACTCGGTGTTGATGCTGGGTTTGGGCTAGCAAGCGTCAGC
GCTCTGGGCGCCCTGAGACTCTTGGGTTCAACTGCTGTCGCCCCGAAACG
AGTTCGGGTCGTGACGGACATCGACGACACCGTCAAGTCCAGCGGGAATA
AGCGTTTGTTCGGAGTACCGCTGGGTGGGATCGACGCTCAATATAGCAGA
GGTGTGTTTTACCCAGGGGTGTTCCAGTTTTCCCTGGAGCTGTCGCGGCA
TCGCGTGCCTTCGTGGCAAGAGCCGCTATCCGTGGCGGTGCTGACTGCGA
GAGCAAGAGAGTTCCTGTTCGCGCTTGAGATCGGCGACACGCACGAGATC
TCCAAGCAGTTCCGACTATGCGGGGATCGCAACGGGCTCAAGGGGTGGGG
GCGGGGACCGGTGCTGTACGGAAGCGTCAAGGAGTGGATCTGTCCCAGCC
GAAAGAGCGAGAGAAAAGCCAAGAACTTTGGGTTCCTCCTGGAAGACGAC
GGGCGAGGAGGCCGACGTCGACCCAGCGGGGCCGAGGGTGGTTACATTTT
CATCGGAGACACCGGCGAGGGCGATCCGCTCGCCGGGGAGATCATGATCT
CCAAGTACCCCGATAGGATGAAGGCGGTGTTTCTTCACGTGGTGAGTGAT
GCCCCCCGTCAGGGGAAGGTGAGCTTGCCGATGGATCGTGTGGTGAGCGG
TGTGCCGGTGGTGTACTTTCGGACATACGTCGGGGCAGCAGCGAAAGCCG
TGGAGCTGGGTTTGATGAACAAGTCGGGGCTGGATAACGTCATCACCGCT
GCAAAGGAGATAGCAGAGGTGTGTTTTACCCAGGGGTGTTCCAGTTTTCC
CTGGAGCTGTCGCGGCATCGCGTGCCTTCGTGGCAAGAGCCGCTATCCGT
GGCGGTGCTGACTGCGAGAGCAAGAGAGTTCCTGTTCGCGCTTGAGATCG
GCGACACGCACGAGATCTCCAAGCAGTTCCGACTATGCGGGGATCGCAAC
GGGCTCAAGGGGTGGGGGCGGGGACCGGTGCTGTACGGAAGCGTCAAGGA
GTGGATCTGTCCCAGCCGAAAGAGCGAGAGAAAAGCCAAGAACTTTGGGT
TCCTCCTGGAAGACGACGGGCGAGGAGGCCGACGTCGACCCAGCGGGGCC
GAGGGTGGTTACATTTTCATCGGAGACACCGGCGAGGGCGATCCGCTCGC
CGGGGAGATCATGATCTCCAAGTACCCCGATAGGATGAAGGCGGTGTTTC
TTCACGTGGTGAGTGATGCCCCCCGTCAGGGGAAGGTGAGCTTGCCGATG
GATCGTGTGGTGAGCGGTGTGCCGGTGGTGTACTTTCGGACATACGTCGG
GGCAGCAGCGAAAGCCGTGGAGCTGGGTTTGATGAACAAGTCGGGGCTGG
ATAACGTCATCACCGCTGCAAAGGAGGCGATGGTGAAGATTCCGCCAAAG
TCGTCCAAGTGGGTGGACATGAACAGGGATCTCCTCTTGGCGCGGATTGC
AGGAAAGCGTCAACAGCTGCCCTCCATGGGCGTAGAAGCTCTCACCTTGA
CACAACATGGCGGCGCTTTGGCGCCAAAGATCAGTCATATTTTGAAGCGT
AGCGGCCCCACTACTACAACAACTAGACGGCGATCCTCTCTTGTCGCCGC
AGCGACCAAGGCTCGTCCATGAGCGATGGTGAAGATTCCGCCAAAGTCGT
CCAAGTGGGTGGACATGAACAGGGATCTCCTCTTGGCGCGGATTGCAGGA
AAGCGTCAACAGCTGCCCTCCATGGGCGTAGAAGCTCTCACCTTGACACA
ACATGGCGGCGCTTTGGCGCCAAAGATCAGTCATATTTTGAAGCGTAGCG
GCCCCACTACTACAACAACTAGACGGCGATCCTCTCTTGTCGCCGCAGCG
ACCAAGGCTCGTCCATGA
back to top