mRNA_C-linearis_contig99.17161.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig99.17161.1
Unique NamemRNA_C-linearis_contig99.17161.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig99.17161.1 vs. uniprot
Match: D7G7V4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7V4_ECTSI)

HSP 1 Score: 339 bits (869), Expect = 9.080e-108
Identity = 173/207 (83.57%), Postives = 184/207 (88.89%), Query Frame = 1 
Query:  385 DMSPPCPSHAHAMGPEETWALISHLTTTLVRELEPERLSEVQRGLAYVASRVTATTDLEMVIPELIHLLGADGKALRALKMVDQGVVLLGVHHMKGSVTRGLLTKDVRSADGWQIGMDVFDQYVQVYHKRREQSVDDMYCQFGGAGAAVGADNHFELDFEVRATFDREMTQLTAAGLRVQRLVCSPTMQPEMRVQLESRILGDLIIL 1005
            D+ PP P+ A   GPEETWALI+ LT+TLV ELEPER++EV+RGLA +A RVT TTDLEMV+PELIHLLG DGKALRALKMVDQGVVLLGVHHMKG VTRGL+TKDVRSA GWQIGMDVF+QYVQVYHKRREQSVDDMY Q        GADNHFELDFEVRATFDREMTQLTAAGLRVQRLVCSPTMQPEMRVQLESRILGDLIIL
Sbjct:   13 DVLPPAPTQAQ--GPEETWALIARLTSTLVHELEPERMAEVERGLASIADRVTGTTDLEMVVPELIHLLGGDGKALRALKMVDQGVVLLGVHHMKGGVTRGLVTKDVRSASGWQIGMDVFEQYVQVYHKRREQSVDDMYSQ-----TVDGADNHFELDFEVRATFDREMTQLTAAGLRVQRLVCSPTMQPEMRVQLESRILGDLIIL 212
[Close]
BLAST of mRNA_C-linearis_contig99.17161.1 vs. uniprot
Match: A0A6H5L330_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L330_9PHAE)

HSP 1 Score: 318 bits (816), Expect = 6.340e-100
Identity = 162/196 (82.65%), Postives = 175/196 (89.29%), Query Frame = 1 
Query:  418 AMGPEETWALISHLTTTLVRELEPERLSEVQRGLAYVASRVTATTDLEMVIPELIHLLGADGKALRALKMVDQGVVLLGVHHMKGSVTRGLLTKDVRSADGWQIGMDVFDQYVQVYHKRREQSVDDMYCQFGGAGAAVGADNHFELDFEVRATFDREMTQLTAAGLRVQRLVCSPTMQPEMRVQLESRILGDLIIL 1005
            A GPEETWALI+ LT+TLV ELEPE+++EV+RGLA +A+RVT TTDLEMV+PELI LLG D KALRALKMVDQ VVLLGVHHMKG VTRGL+TKDVRSA GWQIGMDVF+QYVQVYHKRREQSVDDM      +    GADNHFELDFEVRATFDREMTQLTAAGLRVQRLVCSPTMQPEMRVQLESRILGD+IIL
Sbjct:   24 AQGPEETWALITRLTSTLVHELEPEKMAEVERGLASIAARVTGTTDLEMVVPELIDLLGGDSKALRALKMVDQRVVLLGVHHMKGGVTRGLVTKDVRSASGWQIGMDVFEQYVQVYHKRREQSVDDM------SQTVDGADNHFELDFEVRATFDREMTQLTAAGLRVQRLVCSPTMQPEMRVQLESRILGDMIIL 213
[Close]
BLAST of mRNA_C-linearis_contig99.17161.1 vs. uniprot
Match: A0A7S2SSQ3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SSQ3_9STRA)

HSP 1 Score: 121 bits (303), Expect = 3.170e-27
Identity = 90/239 (37.66%), Postives = 128/239 (53.56%), Query Frame = 1 
Query:  286 VRRIWQRPAAEGSLCKDLPRLARRITIRTRRDEDMSPP-CPSHAHAMGPEETWALISHLTTTLVRELEPERLSEVQRGLAYVASRVTATTDLEMVIPELIHLLGAD-GKALRALKMVDQGVVLLGVHHMKGSVTRG--LLTKDVRSADGWQIGMDVFDQYVQVYHKRREQSVDDMYCQFGGAGAAVGADNHFELDFEVRATFDREMTQLTAAGLRVQRLVCSPTMQPEMRVQLESRILG 990
            +R  +  P  E SL KDLPRLA RI I        SP  C     + G EE  + +  + + L   L+P++ +EV+        R+    D ++   EL+  LG D    +RALK+V QGVVL  +  ++     G  +LTKDVRS DGW++ +DV  Q  Q+ H R+EQS+D     FG A        HFE +FEV AT D  ++ +TAA LRV     + TM+P+ R +L+ +ILG
Sbjct:   10 LRPAFLAPFTETSLAKDLPRLASRIAIT-------SPTLCLDARGSGGEEERTSRVFQVVSLLSAVLQPDQCTEVEELCHAYDQRLAEGADPQIACTELLGALGGDESPVVRALKLVRQGVVLGAMELLRSQAPEGVDILTKDVRSVDGWRVYIDV-QQAFQIRHVRKEQSLD----MFGDAT------QHFEYEFEVSATLDSALSGVTAAWLRVLHAEYAETMKPDRRAELQ-QILG 229
[Close]
BLAST of mRNA_C-linearis_contig99.17161.1 vs. uniprot
Match: A0A2R5GCW9_9STRA (Uncharacterized protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GCW9_9STRA)

HSP 1 Score: 118 bits (295), Expect = 2.630e-24
Identity = 69/189 (36.51%), Postives = 109/189 (57.67%), Query Frame = 1 
Query:  445 LISHLTTTLVRELEPER--LSEVQRGLAYVASRVTATTDLEMVIPELIHLLGADGKALRALKMVDQGVVLLGVHHMKGSVTRGLLTKDVRSADGWQIGMDVFDQYVQVYHKRREQSVDDMYCQFGGAGAAVGADNHFELDFEVRATFDREMTQLTAAGLRVQRLVCSPTMQPEMRVQLESRILGDLIIL 1005
            LI  L   L+  LEP+    + V   +  + + VT  +DL++V+ ++I  +G D K  + LK + Q VVL     +K  +T    TKDVRS+DGW+I + +   + QV H RREQS+D     FG        +NH+E ++E+R TFD++M  +TAA LRV RL+ S TM   +  +L++ ++  LI++
Sbjct:  294 LIVDLIVVLLAYLEPDEDVQAAVIEEVREIQASVTEASDLQLVVRQIIEAVGVDSKVTKVLKCIHQNVVLQSTVAIKEKLTMQFPTKDVRSSDGWRITITLSKGFAQVRHTRREQSIDS----FGNI------ENHWEFEWELRMTFDQQMQNMTAAQLRVTRLMLSETMDVGLAARLKATLVDGLIVM 472
[Close]
BLAST of mRNA_C-linearis_contig99.17161.1 vs. uniprot
Match: A0A7S2DNQ4_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DNQ4_9STRA)

HSP 1 Score: 102 bits (255), Expect = 8.400e-20
Identity = 70/189 (37.04%), Postives = 96/189 (50.79%), Query Frame = 1 
Query:  448 ISHLTTTLVRELEPERLSEVQRGLAYVASRVTATTDLEMVIPELIHLLGADGKAL-RALKMVDQGVVLL--GVHHMKGSVTRGLLTKDVRSADGWQIGMDVFDQYVQVYHKRREQSVDDMYCQFGGAGAAVGADNHFELDFEVRATFDREMTQLTAAGLRVQRLVCSPTMQPEMRVQLESRILGDLIIL 1005
            +  +   L   L+P R            S+V +  D +M   ++++ LGAD   L R LK   QGVVL   G    K    + L+TKDVRSADGWQ+ + V D  V + H RREQS+D     +G A       NHFE  FEV  TFD ++ ++ A  LR+  L  + TM+ E+R  L S     L+IL
Sbjct:  184 VHQVVRALTAILDPTRKELNLEAARMYDSQVQSGMDPQMACADMVNALGADDSPLVRLLKFTTQGVVLAAKGAILDKIGTEQHLMTKDVRSADGWQVAITVIDSVVMIRHVRREQSLD----LWGDAS------NHFEYTFEVACTFDTKLERIFATDLRILDLTLADTMESELRRTLTSAFTTGLLIL 362
[Close]
BLAST of mRNA_C-linearis_contig99.17161.1 vs. uniprot
Match: A0A7S3V399_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3V399_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.530e-17
Identity = 73/231 (31.60%), Postives = 117/231 (50.65%), Query Frame = 1 
Query:  286 VRRIWQRPAAEGSLCKDLPRLARRITIRTR---RDEDMSPPCPSHAHA--MGPEETWALISHLTTTLVRELEPERLSE-VQRGLAYVASRVTATTDLEMVIPELIHLLGADGKALRALKMVDQGVVLLGVHHMKGSVTRGLLTKDVRSADGWQIGMDVFDQYVQVYHKRREQSVDDMYCQFGGAGAAVGADNHFELDFEVRATFDREMTQLTAAGLRVQRLVCSPTMQPEM 960
            ++ ++ R     S  KDL RL  R+++  R   + + +  P  S   A   G E     I  L +TL++  E + ++E   R L  V  R     +  +V  E++ L+G D ++ R LK ++Q +VL G   MK ++T+ + TKDVR  DGW I + + + +VQV H R+E      +C +          N +++++EVR TFDR M  LTAA LR+  L     M  E+
Sbjct:   79 MKSVFDRNIETLSTYKDLGRLISRLSLLLRIPGQGDVVLNPIKSERTAGLSGGEAEIVAIVSLLSTLLKFFEEKHIAESFVRQLKEVRERYGEVENRHLV-KEMVALIGTDSRSARVLKCINQSIVLQGTFEMKSTLTKTVTTKDVREEDGWLIVVTLAE-FVQVKHTRKE------HCTYATRNEPH---NRWDIEWEVRLTFDRNMEDLTAAQLRITNLHLGDAMDEEV 298
[Close]
BLAST of mRNA_C-linearis_contig99.17161.1 vs. uniprot
Match: L8GWR0_ACACA (Uncharacterized protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GWR0_ACACA)

HSP 1 Score: 69.3 bits (168), Expect = 1.390e-8
Identity = 51/177 (28.81%), Postives = 83/177 (46.89%), Query Frame = 1 
Query:  448 ISHLTTTLVRELEP-ERLSEVQRGLAYVASRVTATT-DLEMVIPELIHLLGADGKALRALKMVDQGVVLLGVHHMKGSVTRGLLTKDVRSADGWQIGMDVFDQYVQVYHKRREQSVDDMYCQFGGAGAAVGADNHFELDFEVRATFDREMTQLTAAGLRVQRLVCSPTMQPEMRVQL 972
            +S L   +   LEP E   +V+    +     TA T D+ M++  ++   G   +    LK + QGV+L     +K  VT+ +LTKDVR+ DGW++ + +      V H RRE S+       G  G     +N F  ++ +   F+  +T+L A  LR+  L   P    E + +L
Sbjct:  256 LSSLVCRIAEALEPRETALQVKNSFDFYKKNGTAETMDMGMIMQAILKN-GVGPRTESILKAIHQGVILTTAFEIKHKVTKSILTKDVRTKDGWRVHVHLAPNGAVVTHTRREMSI-------GARGPEP--ENEFVFEWRLSMFFNAALTELEAVKLRLTDLQFGPQTTAENKQKL 422
[Close]
BLAST of mRNA_C-linearis_contig99.17161.1 vs. uniprot
Match: A0A7S0MTD2_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MTD2_9CRYP)

HSP 1 Score: 63.2 bits (152), Expect = 6.350e-8
Identity = 43/131 (32.82%), Postives = 62/131 (47.33%), Query Frame = 1 
Query:  553 DLEMVIPELIHLLGADGKALRALKMVDQGVVLLGVHHMKGSVTRG--------LLTKDVRSADGWQIGMDVFDQYVQVYHKRREQSVDDMYCQFGGAGAAVGADNHFELDFEVRATFDREMTQLTAAGLRV 921
            DLE  I EL   L   G  +R  K+++Q  +   +  +K S            L+TKDVRSADGW+I +D+ D  + V H RREQS+        G  +  G    + + + +   F R+M  LT   L V
Sbjct:   18 DLEPYIRELFSSLDETGPTIRVFKLINQAALAAAITPLKLSAASRSANLRADMLMTKDVRSADGWRISIDIGDHEICVTHIRREQSLS-------GEASPEG----WSMTWRLAIFFPRDMADLTRTTLEV 137
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig99.17161.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7G7V4_ECTSI9.080e-10883.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L330_9PHAE6.340e-10082.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2SSQ3_9STRA3.170e-2737.66Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A2R5GCW9_9STRA2.630e-2436.51Uncharacterized protein n=1 Tax=Hondaea fermentalg... [more]
A0A7S2DNQ4_9STRA8.400e-2037.04Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A7S3V399_9STRA1.530e-1731.60Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
L8GWR0_ACACA1.390e-828.81Uncharacterized protein n=1 Tax=Acanthamoeba caste... [more]
A0A7S0MTD2_9CRYP6.350e-832.82Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig99contigC-linearis_contig99:252439..259085 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score338.2
Seed ortholog evalue3.9e-90
Seed eggNOG ortholog2880.D7G7V4
Hectar predicted targeting categoryother localisation
EggNOG OGs2E713@1,2SDP3@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size2569
Cds size879
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig99.17161.1prot_C-linearis_contig99.17161.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig99 254000..258513 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930848.2096667-UTR-C-linearis_contig99:252438..2539991622930848.2096667-UTR-C-linearis_contig99:252438..253999Chordaria linearis ClinC8C monoicousUTRC-linearis_contig99 252439..253999 -
1690881280.7110267-UTR-C-linearis_contig99:252438..2539991690881280.7110267-UTR-C-linearis_contig99:252438..253999Chordaria linearis ClinC8C monoicousUTRC-linearis_contig99 252439..253999 -
1622930848.2956114-UTR-C-linearis_contig99:258513..2585781622930848.2956114-UTR-C-linearis_contig99:258513..258578Chordaria linearis ClinC8C monoicousUTRC-linearis_contig99 258514..258578 -
1690881280.768829-UTR-C-linearis_contig99:258513..2585781690881280.768829-UTR-C-linearis_contig99:258513..258578Chordaria linearis ClinC8C monoicousUTRC-linearis_contig99 258514..258578 -
1622930848.3163447-UTR-C-linearis_contig99:259021..2590851622930848.3163447-UTR-C-linearis_contig99:259021..259085Chordaria linearis ClinC8C monoicousUTRC-linearis_contig99 259022..259085 -
1690881280.787607-UTR-C-linearis_contig99:259021..2590851690881280.787607-UTR-C-linearis_contig99:259021..259085Chordaria linearis ClinC8C monoicousUTRC-linearis_contig99 259022..259085 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930848.2225251-CDS-C-linearis_contig99:253999..2542481622930848.2225251-CDS-C-linearis_contig99:253999..254248Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 254000..254248 -
1690881280.7240028-CDS-C-linearis_contig99:253999..2542481690881280.7240028-CDS-C-linearis_contig99:253999..254248Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 254000..254248 -
1622930848.2370558-CDS-C-linearis_contig99:254592..2547241622930848.2370558-CDS-C-linearis_contig99:254592..254724Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 254593..254724 -
1690881280.7319396-CDS-C-linearis_contig99:254592..2547241690881280.7319396-CDS-C-linearis_contig99:254592..254724Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 254593..254724 -
1622930848.2504325-CDS-C-linearis_contig99:255182..2554321622930848.2504325-CDS-C-linearis_contig99:255182..255432Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 255183..255432 -
1690881280.7400692-CDS-C-linearis_contig99:255182..2554321690881280.7400692-CDS-C-linearis_contig99:255182..255432Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 255183..255432 -
1622930848.263125-CDS-C-linearis_contig99:257593..2577831622930848.263125-CDS-C-linearis_contig99:257593..257783Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 257594..257783 -
1690881280.7504816-CDS-C-linearis_contig99:257593..2577831690881280.7504816-CDS-C-linearis_contig99:257593..257783Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 257594..257783 -
1622930848.2783763-CDS-C-linearis_contig99:258455..2585131622930848.2783763-CDS-C-linearis_contig99:258455..258513Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 258456..258513 -
1690881280.7590802-CDS-C-linearis_contig99:258455..2585131690881280.7590802-CDS-C-linearis_contig99:258455..258513Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 258456..258513 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig99.17161.1

>prot_C-linearis_contig99.17161.1 ID=prot_C-linearis_contig99.17161.1|Name=mRNA_C-linearis_contig99.17161.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=293bp
MSAYGSSYSYQEGRSGVGAGLCGRWPWGGGAHTPDAHPRWTNEDESEAFT
SGVRRIWQRPAAEGSLCKDLPRLARRITIRTRRDEDMSPPCPSHAHAMGP
EETWALISHLTTTLVRELEPERLSEVQRGLAYVASRVTATTDLEMVIPEL
IHLLGADGKALRALKMVDQGVVLLGVHHMKGSVTRGLLTKDVRSADGWQI
GMDVFDQYVQVYHKRREQSVDDMYCQFGGAGAAVGADNHFELDFEVRATF
DREMTQLTAAGLRVQRLVCSPTMQPEMRVQLESRILGDLIIL*
back to top

mRNA from alignment at C-linearis_contig99:252439..259085-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig99.17161.1 ID=mRNA_C-linearis_contig99.17161.1|Name=mRNA_C-linearis_contig99.17161.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=6647bp|location=Sequence derived from alignment at C-linearis_contig99:252439..259085- (Chordaria linearis ClinC8C monoicous)
GTTCACCAGTTCACAGCACACACTACAAATACTACGTTTTTCGGTCTCCG
TTCACACGAGTGAGGTGGGTTTTCGTTTCGAGAGAGACAGAGAGACAGAG
AGGCAGAGAGGCAGAGAACACCCAAGAGAGAGAGAGAGAGAGAGAGAGAG
AGCAGAGGGGTGCGCGAGGTGGAGACGGTGACTAGAAGGAGGAGAAAAGA
GTAAAAGCGTGAAACTGAGCCGGAAAACACCGCCCATATTTCCTCCGCGT
TGCTTGTGTGCAGCTATGCATACATACATGTGGATTGCTCCGTAGTGAGT
CTCGGCCTGCCTGTGCTGCTTGCTCTCCCATGTGGAGCATAACATTGCGA
TGGTGAAATCGCGGTTTGTTATTCCTCCTCTCTTTTTGCGCGCGTTGGTG
GTCCCCCACAACTTCTGACTTCTGACAGGCGAGGCGAAAAAATAATCTCT
CAGACACGCTCCTTTGTCTCTCACTCTCTCCCTCTCTCTGCCTCTGAACT
CTCACAGCTCTCGCGCACCAGCACACTTGCACCTCTCCGTTGTGGCATCT
GCTCTACCTTATCGTCTCCAGCATGAGCGCTTACGGGAGCAGCTACAGCT
ACCAAGAAGGCCGCTCTGGCGTCGGGGCAGGTGGGAACAAAAAACAACGT
CCAACAAACAGCAGTAGCGCAATCTCCTACAGTACTCTCTTTCGTGGTTG
TGTTGCGGGTTTGTGCTGCATCGGATCTTTCAAACAAATGTACTCCGTAT
TATATACGCATGTCCGTATCATTTGGTTGTTTGCGGGCGTACCCGCCGCG
CTTGTTCGTTAATTGCCGGCCATTTTACGGAGAGGGGGAGATGGGGCTGC
TGCAAGAAGCGGGCACGCAGCGAGGTCAGGGGGGATCGAAACGCGCCTCC
TGTTTCAGCAGTCAATCAACACCGCCGAATCAGGGGTCGGGGAGTTGGTC
AAGAAAGAATTCCGGGCTGCTCTCGTGTCTCTCTTTCGTTCCCTCGTTCG
CACAAAACCCACCATTATCGTTTCTCTCATATCTTCTCTTGAAACGTCTA
TAATAATTTATGTCCGCATGTATCATGCTTTTCTTCTCGCCGCATCTCTG
ATCGGTCGAGCTTGTCAGATGTTGGTTGTTGTTTGTCGGCTTGTCCGCCA
AAAAGGAGATGGAGCGAGGGGTATTACTGAAGCCACTTGCGACTCCCAAC
CAGTATAGACTATCGACAATCACAAGCACTAGACTGCTGTGCATCAGCAT
CCATTTCGACCACACCCATTACATTGCATGTCCATGCCCTCAACCAACCT
AGGGCTTTGCGGGCGGTGGCCATGGGGTGGTGGCGCGCATACGCCTGATG
CCCACCCTCGGTGGACCAACGAGGACGAGAGCGAGGCATTCACCTCCGGC
GTGCGCAGGATCTGGCAGCGGCCGGCGGCAGAAGGCAGCCTTTGCAAAGA
CCTACCGCGCTTGGCCCGTCGCATAACAATACGAACCCGCAGGTATTGTA
CGTCGCTATCTGTTGTATCTGTGTACTCTCTCCGTTGGGTAGACAGACGA
CTGCTGGGTCAATAGTCTATTCGTTATCGCATACATGAATACATTGCAGC
AGTTGGTTACGCGTTTTACAGCAGTATATTAGTGTGTGGTCGTCCCTATA
TTTAGGTTGATGTCTTTGAATACTTGAAGTGATGTATGCTGCTGTGTGAG
GATCCTCGACTTTGCTGCGTTTTGCACCTGTGTCGCGACACTCGAAGATT
CGGCACGCCTATTCTGCGTTTATGATGTACCTATCGTCCTTGCTGCGTAT
GTGGTCGTACATTCCTACAATTTGTGTAGATTTTTATGCACGTTTGATTT
TATGATATCTGATATCTGGGTTTGCATCCTGTGTCTTTTTTTTCGCGTGG
ATCTATTTTCCCGGGGTAAATAAATCAATAAATCTAGGATCGTGACGTTT
CACCTGATGTTTCATACCGGGTAGTTGTCCAGGGATGTGTGTGTGTGTGT
GTTTTCGTCCCATTTATTTTGGCGACAGTCCCTTTCCGATCAAGGCGAGA
CATGTACTACACGTTGCGGTGTATTTAGAGTACTACACTTGTTCAGTGTA
TTTTTCTGTACAACTAGAACCAACCGGGGTCACACAGGAGGGGGTAAACA
CTGGGGAATTTTTCTTCTTTTTCTGTTTCTTTTTTGCCCCACCTTCCTCC
TGCGGTGCTTGCCTTGGATTTTATCGCGAGAAGGGTGCAGCCATCCCTTT
CCCTCGTCAACGTGCTAAGTCGAAGTTTGGTACTCACGAGCTTTTTCAGC
TATTTTATCGCTTTCACCTGCAAAGTCGCAAAATAAACACTTTTGCTTGG
GATCGAACTCCAGACTTTGCTGCTAGTGGGTTCGAGGTTAAACCACTAGT
CCACCGGGGCGACCGGGATGTAGTCTCCGGAAAAAACAGCGTATTGTACA
ATATGTTTCTCACATTAGCTCTCTACAGCAGTTGAGGCCCGCACTTCAGA
ACCTCCTATTTTGCGTAACCCTGGGAGTTCTTATTTCCCTTGTGGGTTAT
CCCATCTACTGTACCATAGGTTTTAGTATGGGTCGGATTCAAGTTCTTAA
ATTCCGTGAAAATTGAACCCTGAATTTCTTAACGACCAGGTTCTGAAGTG
CGGGCCGCAACTCTGTATTCCAAAACATCCATGGGAGCCCGTGGTCACAA
AACTGGGCACACTCGACGCCGCAAAGAAACTCAAGCAGAAAATATGGTAC
ATACGCGGCGCCCTGCGACACTAAACTGGGACCCGAGGGTTCTCGCGTTT
CGCTGGCGCTAAATCAGAGGAATAGGGTACATACCACTGGGAAGAAAAAT
AAAAGGTGTTGGAAAACACCAGAATAACCAGATACCACGCTAGTGAAGGA
GAGACGACTACGACTAGCCGAAGGCTTCCCACACCCGCCTACAACGTCGG
AGGGTTCCATGTCGGGTTCCGTGTCGGGTTCCGTGTCGGGTTCTCGCCGA
CCAGGCACGTACGCAACTGCTGTCTCTCCAATTAATCAATTAATCTGTAG
ATGGTGGCGCTTCACCTGATGTTTCATACCGGATAGTTGGTGGGCATGTA
ATCTCAGGAAAACAGAACCTCATGCAACTGCTGTGTCCGCACACCGAAAA
CTTTTCCGGGTGGAGATGTTCGATGTGCGCGTTCTCGTTAGAGGGGTAAT
TCAGGAAGAAGTCGGCGGATTTGGATGCGCACCTACACATGTCTTTGCGC
ATGAAGGAGATTGTACATGAGCGTTTACTACGGCTCAAGCACGAGGAGGA
AAAACAGTCATGTAGTCGATACCTGTAGATGATACCACGCGGCGGTAGGG
ATACGGGGAATCCAGCACCTGCATGATTAATTACCCTTCCGGCTGCTTTT
TCCGCGGATGCAACCCTTTTTCGGTATGGCCCTATCCCAACCAAAATGTG
AAAGGTATTGCCCAGTAGCTGAACTTTCTTCAGTTTGTTTTTCGAGGGGA
TTGCTTCTGTAAAACCCCACCCGAGTCACGCGGGTAAGGGAGTTTTTTCG
AAGAACGATGCCATAACCCTGGGCTCCTTCGCGGAGCATCGCTGAATTTT
GTCCGTTTGTCCTTTTGCTACTACCTTTTGTTTTCGTTTCACGTTTGTTT
CAGGGATGAGGATATGTCGCCGCCTTGTCCTTCGCATGCCCATGCGATGG
GGCCGGAGGAGACGTGGGCGTTGATATCGCACCTCACGACCACTCTCGTA
CGCGAGCTGGAACCCGAGCGATTGTCAGAGGTGCAGAGGGGACTCGCTTA
CGTGGCTTCCAGGGTGACGGCCACGACAGACCTGGAGATGGTCATTCCCG
AGCTGATACACTTGCTTGGCGCGGACGGCAAAGCCCTTCGGGCCCTCAAG
ATGGTCAGTGATGAATGATGCCCCATTTTAGCCTTTACTTCTGCTACAAG
CACTGCTGTAGCTTACTCCCTGGCTGGTGATCTTGGTGCGAAGATCTTGG
ATTTCCGATTTCAGACTGCCTGCGAACCACAGTTGCTCGCACTTTTTTTG
TTTCGTGTGTTGGGTTGGGTGGATGAGGCACTACACTGACACGATACCAC
GAGAGACGCTTGAAAATGTATACGACATGAAGGACGAAAGCGCCTGCCTT
GCGTTTTGCTCGCACTGGATGTTGGGTGGCAAGCTCCGCCTTCTGGAAGG
TCAGTCGTTACCACACCCTTGACTGACGCAGTTGTTTCTCAATATATACT
CCGTAGTACCATACTAACTACTGCTGTGGTTTGATATCAAACCCACTGAT
GGCTTCGCCGGCTCTGTTCTTGTCTTGTTCTCTTTTCATTTGTTTTTTTG
TGCGTGCTCAGGTTGATCAGGGCGTCGTGCTGCTAGGAGTGCACCACATG
AAAGGAAGCGTGACCCGCGGACTGCTCACCAAGGATGTGCGCTCGGCAGA
TGGTTGGCAGATCGGGATGGACGTGTTCGACCAATATGTTCAGGTGCGCT
AGGACTCTTCATGTAGTCATGTCGTGTCGCCCCATGTCGTCGCCGGTCAC
GTCATCCTCATGCTGCCACCATCATCGCCACGTCACCATGACGTCACCAT
GCCAGCCATCATCACAACTATGTTGAGGAGCCATCACAGCGATGTTGATG
ACTGCTGGACTCCGATTTCGGGAAGGATTAGGATTGTCTATCGAGTGTGT
CTATCCGAGTGGGAAAATCAAACGACCCCATCAACTATCACTGTCTCATC
CCTTGTGCGCCTTCGTTGACAGCAGCACATATCAACGTAGTTTGCCTCTG
TTCAATACTTCGATACTGGAACTTTAAATCGACCCAGGTGTACCACAAGC
GCCGCGAGCAGTCGGTGGATGACATGTACTGCCAGTTCGGAGGTGCTGGT
GCTGCTGTTGGTGCGGACAACCATTTCGAGCTGGATTTTGAGGTTCGAGC
GACGTTCGACCGCGAAATGACGCAGCTCACGGCTGCAGGTCTGCGCGTGC
AGCGGCTTGTTTGCAGCCCGACCATGCAGCCAGAGATGAGAGTGCAGCTC
GAATCTCGCATCCTCGGAGATTTGATAATCTTGTAAATCGACCCGTGCAG
TGAAAGAACTTGAGGTGTTCATGTTTCGTTACGCTACGGCGGTGGCGACG
CTCAATGAATGCAATACCTGTAGCCCTGTAGGCAAAGTCACTCCGCCTAT
GCGATCCCTTTATGTTTCTATCGTCTAGCGTCTATCGTACCATGATTGTT
CCGTTGCGTGGCGTGGCGCACGTTTAAGGTTGCCGGTCTGTAGTGTTCCT
TTTCCTTTCCTACTACTGGGGGAAAAAGACGGACTACCGCTGTGTAATGT
GTAATTACCCTAGAAAATATTTCCAGCTCGGCGTGTTAGCCACCGTGCGT
ACCCTACCGCTGGGTGAAAATGTCTCGGGATCATGTAAATCTGTTTGTTC
GCTCTGTATGTCATACAGAGCACCGGGTCTGGTGGGGTTTGTTTGTTTCT
GCGTTTTTGCCTGGCCCGCTCGAGCGAGGAGCCCCGCAACCGCATCGTAG
ATTTAGATTTTTAATTTTGAGCTGTACCGCCGTCCAACCGCACGACAGAC
GGACTCGCGCGGTCCATGATTCAGATCATGATTTAGATGGCATCCATAGG
TCGTTAGGTCGGGTGCCTGTTAAAATCTTTTATTTTTGCATCTCCTGCTT
TTGCTGCTCTGGGATGTGTCATGTATACTGTAGCCGTCGTTTTTTTGTCC
GAGTACTACAAACTAAATAGATCTGAGCGTGTTTCTTGGTTTAGTTTATC
ACTCTCGAGGGGTTATGGTTAGACGATAAAGCTAATGGTTGCGTAGCTTG
CATGTAGGTGGTTTCGAGTGCTTTGAACGCGCCTCATCAATTTGCATTCT
TGTACGTTTCGCTCCCACAGCAGCATCGCAATACCCTACACGGGTATTTC
GTTTTTTTTCGAGGCAATAAAACATTTTTTCGAGGCAATAAAGCAACAGC
TTTTGATTGCGTGTTTTGATTGTACTGCTGTGTGTTCCAAAGTTTTGAAA
GCGCCTCCCGAATTTTCATTCCTGTATTTTTCGCTCCCAGAGCAGAGAGC
AGCATCACAGTATTCCCCATGGAGTATTTTGTATTTTGTTCATTTCGTGA
CAATTGATTACAACAGCTTTTTGATTGCATTGGCTTGCTCTACTGGTGTG
TGTTCCAAAGTTTTGAACGCGCCTCACGAATTTGCATTCTTGTACGTTTC
GCTCCCACAGCAGCGTCACAGAGTATTCCTCGTGGAGTATTTTGTTTTTA
TATCTTGGCAATTGAATACAACAGCTTTTTTTGATTGCGAGGCTTGCGTG
TACTGCTGTGTGTTCCAAAGTTTTGGACGCGCTTCAAGAATTTGCATTCT
TGTATTTTTCGCTTCCACAGCAGCATCACAGTATTCCTCATGAGTATTTT
GTTTGATTTCGTGGCAATTGACTACCGTTTGTGGCTGCTTGGCTTGCAGG
TAGTGGCCTGCATGTTCCATTGCTTTCAACGCGCTTCACGGATTTGCATT
CTTGTACAATCGCTTTCACAGCAGCATCGCAATGTTCCTCATGGAGTTGT
TCGTTTTTTTTCGTGGCAAGTTGACGAAGCCACCTTTATTCGCGGCC
back to top

Coding sequence (CDS) from alignment at C-linearis_contig99:252439..259085-

>mRNA_C-linearis_contig99.17161.1 ID=mRNA_C-linearis_contig99.17161.1|Name=mRNA_C-linearis_contig99.17161.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1758bp|location=Sequence derived from alignment at C-linearis_contig99:252439..259085- (Chordaria linearis ClinC8C monoicous)
ATGAGCGCTTACGGGAGCAGCTACAGCTACCAAGAAGGCCGCTCTGGCGT
CGGGGCAGATGAGCGCTTACGGGAGCAGCTACAGCTACCAAGAAGGCCGC
TCTGGCGTCGGGGCAGGGCTTTGCGGGCGGTGGCCATGGGGTGGTGGCGC
GCATACGCCTGATGCCCACCCTCGGTGGACCAACGAGGACGAGAGCGAGG
CATTCACCTCCGGCGTGCGCAGGATCTGGCAGCGGCCGGCGGCAGAAGGC
AGCCTTTGCAAAGACCTACCGCGCTTGGCCCGTCGCATAACAATACGAAC
CCGCAGGGCTTTGCGGGCGGTGGCCATGGGGTGGTGGCGCGCATACGCCT
GATGCCCACCCTCGGTGGACCAACGAGGACGAGAGCGAGGCATTCACCTC
CGGCGTGCGCAGGATCTGGCAGCGGCCGGCGGCAGAAGGCAGCCTTTGCA
AAGACCTACCGCGCTTGGCCCGTCGCATAACAATACGAACCCGCAGGGAT
GAGGATATGTCGCCGCCTTGTCCTTCGCATGCCCATGCGATGGGGCCGGA
GGAGACGTGGGCGTTGATATCGCACCTCACGACCACTCTCGTACGCGAGC
TGGAACCCGAGCGATTGTCAGAGGTGCAGAGGGGACTCGCTTACGTGGCT
TCCAGGGTGACGGCCACGACAGACCTGGAGATGGTCATTCCCGAGCTGAT
ACACTTGCTTGGCGCGGACGGCAAAGCCCTTCGGGCCCTCAAGATGGGAT
GAGGATATGTCGCCGCCTTGTCCTTCGCATGCCCATGCGATGGGGCCGGA
GGAGACGTGGGCGTTGATATCGCACCTCACGACCACTCTCGTACGCGAGC
TGGAACCCGAGCGATTGTCAGAGGTGCAGAGGGGACTCGCTTACGTGGCT
TCCAGGGTGACGGCCACGACAGACCTGGAGATGGTCATTCCCGAGCTGAT
ACACTTGCTTGGCGCGGACGGCAAAGCCCTTCGGGCCCTCAAGATGGTTG
ATCAGGGCGTCGTGCTGCTAGGAGTGCACCACATGAAAGGAAGCGTGACC
CGCGGACTGCTCACCAAGGATGTGCGCTCGGCAGATGGTTGGCAGATCGG
GATGGACGTGTTCGACCAATATGTTCAGGTTGATCAGGGCGTCGTGCTGC
TAGGAGTGCACCACATGAAAGGAAGCGTGACCCGCGGACTGCTCACCAAG
GATGTGCGCTCGGCAGATGGTTGGCAGATCGGGATGGACGTGTTCGACCA
ATATGTTCAGGTGTACCACAAGCGCCGCGAGCAGTCGGTGGATGACATGT
ACTGCCAGTTCGGAGGTGCTGGTGCTGCTGTTGGTGCGGACAACCATTTC
GAGCTGGATTTTGAGGTTCGAGCGACGTTCGACCGCGAAATGACGCAGCT
CACGGCTGCAGGTCTGCGCGTGCAGCGGCTTGTTTGCAGCCCGACCATGC
AGCCAGAGATGAGAGTGCAGCTCGAATCTCGCATCCTCGGAGATTTGATA
ATCTTGTAAGTGTACCACAAGCGCCGCGAGCAGTCGGTGGATGACATGTA
CTGCCAGTTCGGAGGTGCTGGTGCTGCTGTTGGTGCGGACAACCATTTCG
AGCTGGATTTTGAGGTTCGAGCGACGTTCGACCGCGAAATGACGCAGCTC
ACGGCTGCAGGTCTGCGCGTGCAGCGGCTTGTTTGCAGCCCGACCATGCA
GCCAGAGATGAGAGTGCAGCTCGAATCTCGCATCCTCGGAGATTTGATAA
TCTTGTAA
back to top