mRNA_C-linearis_contig99.17158.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig99.17158.1
Unique NamemRNA_C-linearis_contig99.17158.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig99.17158.1 vs. uniprot
Match: D7G7V7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7V7_ECTSI)

HSP 1 Score: 445 bits (1144), Expect = 3.580e-152
Identity = 214/247 (86.64%), Postives = 224/247 (90.69%), Query Frame = 1
Query:  352 VAGKKRPREDATATQSSISKHHPFPTEYGDHFETPLQAYRDIEGPLALLSKLLGKKRKHLRIWDPYYCAGRTPRLLRQLGFPKVEHSNQDFYKLAREKKQPKHDVLVTNPPYSGDHKKRCLEYCRASGKPWFLLVPNYVATKDYYRLAVLGPAAGPGGEPFYVVPESKYSFDHPEGTGYADSPFSGVWYVQCGSHTEAVFQGATAEKRGGVSVLRSLDELSQTGAVATARRLNPRQRKALKKKRSAA 1092
            +AGKKRPRE   A       HHPFPTEYGDHFETPLQAYRDIE  LALL+KLL KKRKHLRIWDPYYCAGRTPRLL QLGFPKVEHSNQDFYK+ REK+QPKHDVL+TNPPYSGDHKKRCLEYCRASGKPWFLLVPNYVATKDYYRLAVLGPAAGPGGEPFYVVPE+KY FDHPEGTG+ADSPF+GVWYV CGSHTEAVF+G   +KRGGVSVLRSLDELSQTGAV T RRLNPRQRKALKKKR AA
Sbjct:   88 LAGKKRPRESLAAPH-----HHPFPTEYGDHFETPLQAYRDIEVALALLAKLLDKKRKHLRIWDPYYCAGRTPRLLGQLGFPKVEHSNQDFYKVVREKRQPKHDVLITNPPYSGDHKKRCLEYCRASGKPWFLLVPNYVATKDYYRLAVLGPAAGPGGEPFYVVPENKYYFDHPEGTGHADSPFTGVWYVHCGSHTEAVFEGTITQKRGGVSVLRSLDELSQTGAVTTERRLNPRQRKALKKKRMAA 329          
BLAST of mRNA_C-linearis_contig99.17158.1 vs. uniprot
Match: A0A6U0XTY6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U0XTY6_9STRA)

HSP 1 Score: 221 bits (562), Expect = 7.470e-66
Identity = 115/234 (49.15%), Postives = 152/234 (64.96%), Query Frame = 1
Query:  394 QSSISKHHPFPTEYGDHFETPLQAYRDIEGPLALLSKLLGKKRKHLRIWDPYYCAGRTPRLLRQLGFPKVEHSNQDFYKLAREKKQPKHDVLVTNPPYSGDHKKRCLEYCRASGKPWFLLVPNYVATKDYYRLAVLGPAAGPGGEPFYV--VPESKYSFDHPEGTGYADSPFSGVWYVQC-GSHTEAVFQGATAEKRGGVSVLRSLDELSQTGAVATARRLNPRQRKALKKKRS 1086
            +++ ++ HPF TEYGDHFETPL AY+ +   L  ++K LGKK K LRI+DP+YCAG     +  LGFP++ H N+DFY+   E + P  DVLVTNPPYS DHK+R L +C  SGKPW LL+PNYVATK YY     G +  P   PF+V  +P S+Y + HPEGTG+ +SPF  +W+V       E + + + AE   G  V+ S+ +L Q   V   RRLNPRQRKA  K+R+
Sbjct:    2 EAAEAEAHPFSTEYGDHFETPLIAYKHLRPVLCWIAKRLGKKPKELRIYDPFYCAGAVVGRMASLGFPRLIHRNEDFYRCESEGRVPAFDVLVTNPPYSLDHKERILNFCVTSGKPWALLMPNYVATKQYYTNLTSGGSGAPP-TPFFVAPLPGSRYQYTHPEGTGHDNSPFESMWFVDAMAGKKEVMGELSPAE---GSRVMLSIADLKQARCVRPGRRLNPRQRKAAAKRRA 231          
BLAST of mRNA_C-linearis_contig99.17158.1 vs. uniprot
Match: A0A8J4APU4_9CHLO (Uncharacterized protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4APU4_9CHLO)

HSP 1 Score: 218 bits (555), Expect = 2.710e-63
Identity = 111/238 (46.64%), Postives = 146/238 (61.34%), Query Frame = 1
Query:  418 PFPTEYGDHFETPLQAYRDIEGPLALLSKLLGKKRKHLRIWDPYYCAGRTPRLLRQLGFPKVEHSNQDFYKLAREKKQPKHDVLVTNPPYSGDHKKRCLEYCRASGKPWFLLVPNYVATKDYYRLAVLGPAAGPGGEPFYVVPESKYSFDHPEGTGYADSPFSGVWYVQCGSHTEAVF----------------QGATAEKRGG---VSVLRSLDELSQTGAVATARRLNPRQRKALK 1074
            PF  +Y DHFE+PLQA +DIE  L LLS  L K +  L ++DPY+C G   +   QLGF    H N+DFYK       P +D+LVTNPPYS DHK+R LE+C  SGKPW LL+PNYVATK Y+   +   +      PF++ P+++YS++HPEGTG+A+SPF  +WY+  G +TE ++                Q   A   GG   VSV R++D L Q  AV TARRLNP+QR  +K
Sbjct:  108 PFRVDYNDHFESPLQAVQDIEPVLQLLSIKLKKSKSSLTVYDPYFCQGGIRQHYEQLGFKNFIHRNRDFYKDVDSGNVPSYDILVTNPPYSSDHKERILEFCLRSGKPWALLLPNYVATKAYFSELLDSVSTPAAQRPFFLTPQARYSYEHPEGTGHAESPFFSIWYIGLGEYTETIYKACKARLEPQSNGSSIQSEAAAGLGGRWRVSVARTVDALKQAKAVPTARRLNPKQRARMK 345          
BLAST of mRNA_C-linearis_contig99.17158.1 vs. uniprot
Match: A0A2J8ADG8_9CHLO (Uncharacterized protein n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J8ADG8_9CHLO)

HSP 1 Score: 214 bits (544), Expect = 1.690e-61
Identity = 112/245 (45.71%), Postives = 147/245 (60.00%), Query Frame = 1
Query:  418 PFPTEYGDHFETPLQAYRDIEGPLALLSKLLGKKRKHLRIWDPYYCAGRTPRLLRQLGFPKVEHSNQDFYKLAREKKQPKHDVLVTNPPYSGDHKKRCLEYCRASGKPWFLLVPNYVATKDYYRLAVLGPAAGPGGEPFYVVPESKYSFDHPEGTGYADSPFSGVWYVQCGSHTEAVFQ-------------GATAEKRGG-----------VSVLRSLDELSQTGAVATARRLNPRQRKALKKK 1080
            PF  +Y DHFET  +A +DI   L  LSK L K    L ++DP+YCAG        LG  K  H N+DFY   ++   P +D+LVTNPPYSGDHK+R LE+C  SGKPW LL+PNYVATK Y+       +  P   PF++ P ++YS+DHPEGTG+ +SPF  +WYV  G+HTE V+              GA  +++GG           V++ RS+D L Q  AV T +RLNP+QRK LK+K
Sbjct:  119 PFAADYNDHFETDFRAVQDILPVLQQLSKRLCKPLSELAVYDPFYCAGGVRAHYAALGITKFIHRNRDFYDDVKKGALPSYDILVTNPPYSGDHKERILEFCLRSGKPWCLLMPNYVATKAYFGQLQDAASTPPLQRPFFLTPHARYSYDHPEGTGHTESPFFSIWYVCLGAHTEGVYGSCRSRLDAAPAAGGAADQRQGGAPAGXXXAAWGVALARSVDALRQAKAVPTGKRLNPQQRKRLKQK 363          
BLAST of mRNA_C-linearis_contig99.17158.1 vs. uniprot
Match: A0A150GNL1_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GNL1_GONPE)

HSP 1 Score: 199 bits (507), Expect = 8.960e-58
Identity = 100/210 (47.62%), Postives = 132/210 (62.86%), Query Frame = 1
Query:  472 DIEGPLALLSKLLGKKRKHLRIWDPYYCAGRTPRLLRQLGFPKVEHSNQDFYKLAREKKQPKHDVLVTNPPYSGDHKKRCLEYCRASGKPWFLLVPNYVATKDYYRLAVLGPAAGPGGEPFYVVPESKYSFDHPEGTGYADSPFSGVWYVQCGSHTEAVFQGATAEKRGG-------VSVLRSLDELSQTGAVATARRLNPRQRKALKKK 1080
            D++  L  L K L K+   L ++DP++C G   +    LGF    H N+DFYK       P +D+LVTNPPYS DHK+R L++C  SGKPW LL+PNYVATK Y+   +   A  P   PF++ P  +Y++DHPEGTG+A+SPF  +WYV  GSHTEAV+    A+   G       VS+ RS++ L Q  AV TA+RLNP+QR  LKKK
Sbjct:   17 DLQPVLTALCKKLKKRPSQLVVYDPFFCKGGIRKHYEALGFTSFVHENRDFYKDVEAGALPDYDILVTNPPYSEDHKERILDFCLRSGKPWALLLPNYVATKAYFSSLLADTATPPPQRPFFLTPRVRYTYDHPEGTGHAESPFYSIWYVGLGSHTEAVYGSCRAKLDAGGGGGSWDVSLARSVEALRQAKAVPTAKRLNPKQRLRLKKK 226          
BLAST of mRNA_C-linearis_contig99.17158.1 vs. uniprot
Match: A0A7S1IGA0_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1IGA0_9EUGL)

HSP 1 Score: 202 bits (514), Expect = 9.930e-58
Identity = 104/216 (48.15%), Postives = 139/216 (64.35%), Query Frame = 1
Query:  430 EYGDHFETPLQAYRDIEGPLALLSKLLGKKRKHLRIWDPYYCAGRTPRLLRQLGFPKVEHSNQDFYKLAREKKQPKHDVLVTNPPYSGDHKKRCLEYCRASGKPWFLLVPNYVATKDYYRLAVLGPAAGPGGEPFYVVPESKYSFDHPEGTGYADSPFSGVWYVQCGSHTEAVFQGATAE--KRGGVSVLRSLDELSQTGAVATARRLNPRQRKAL 1071
            EYGDHFET  QAY+DI   L   ++L+ +    L I+DP+YC G   R L  LGF  V H  +DFY   +  + P+HD+L+TNPPYSGDHK+R LEYC ASGKPW LL+PNY+ATK+YY+  +    A    EPFY V   +Y F HPEGTG+  SPF G W++  G HTE ++Q +     +    ++ R++D+L Q   V  A R+NP++RKAL
Sbjct:   96 EYGDHFETCDQAYKDITPLLKEAARLMQRDASSLGIYDPFYCDGAVKRHLAALGFHTVHHEKRDFYADVKNGQVPEHDILITNPPYSGDHKERILEYCCASGKPWALLLPNYIATKNYYQSTL----AKHKQEPFYFVSRERYMFYHPEGTGHDTSPFEGFWFLYLGPHTEHLYQWSVQNLPRSSYKALTRTVDDLLQKRLVP-APRMNPKRRKAL 306          
BLAST of mRNA_C-linearis_contig99.17158.1 vs. uniprot
Match: A0A835SR82_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835SR82_9CHLO)

HSP 1 Score: 201 bits (511), Expect = 6.740e-57
Identity = 107/246 (43.50%), Postives = 138/246 (56.10%), Query Frame = 1
Query:  418 PFPTEYGDHFETPLQAYRDIEGPLALLSKLLGKKRKHLRIWDPYYCAGRTPRLLRQLGFPKVEHSNQDFYKLAREKKQPKHDVLVTNPPYSGDHKKRCLEYCRASGKPWFLLVPNYVATKDYYRLAVLGPAAGPGGEPFYVVPESKYSFDHPEGTGYADSPFSGVWYVQCGSHTEAVF-----------QGATAEKRG--------------GVSVLRSLDELSQTGAVATARRLNPRQRKALKKK 1080
            PF  +Y DHFET   A  DI+  L  L K L K    L I+DP++C G   R     GF    H  +DFY      + P +D++VTNPPYS DHK+R L++C  SGKPW LL+PNYVATK YY   +      P   PFY+ P ++Y+++HPEGTG+A+SPF  +WYV  G HTEAV+            GA A                   V++ RS+D L +  AV TA+RLNP+QR  LKKK
Sbjct:   96 PFEVDYNDHFETSSAAVDDIQPVLTALCKRLKKTPAQLAIYDPFFCKGGIRRHYEARGFTNFIHRKRDFYADVANGQLPAYDIMVTNPPYSADHKERILDFCLRSGKPWALLLPNYVATKAYYAELIEAAGTPPQQRPFYLTPITRYAYEHPEGTGHAESPFYSIWYVGLGQHTEAVYGACRTRLDLSTSGAAAAASXXXXXXXXXXXXXGWAVTLARSVDALREAKAVPTAKRLNPKQRARLKKK 341          
BLAST of mRNA_C-linearis_contig99.17158.1 vs. uniprot
Match: A0A835Y0N0_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835Y0N0_9CHLO)

HSP 1 Score: 206 bits (524), Expect = 7.290e-57
Identity = 107/258 (41.47%), Postives = 141/258 (54.65%), Query Frame = 1
Query:  418 PFPTEYGDHFETPLQAYRDIEGPLALLSKLLGKKRKHLRIWDPYYCAGRTPRLLRQLGFPKVEHSNQDFYKLAREKKQPKHDVLVTNPPYSGDHKKRCLEYCRASGKPWFLLVPNYVATKDYYRLAVLGPAAGPGGEPFYVVPESKYSFDHPEGTGYADSPFSGVWYVQCGSHTEAVFQGATAEKRG----------------------------------GVSVLRSLDELSQTGAVATARRLNPRQRKALKKKRSA 1089
            PF  +Y DHFETP+QA RD++  L  L   LGK    L ++DP++C G   R    LG+    H  +DFY        PK+DVLVTNPPYS DHK+R LE+C  SGKPW LL+PNYVATK Y+   +   +      PF++ P ++Y ++HPEGTG+A+SPF  +WYV  G HTE VFQ   A                                      GV + R ++ L   GAV TARR NPRQR+ +K++ +A
Sbjct:  266 PFEVDYNDHFETPIQAVRDLQPVLTALCGRLGKSPAQLAVYDPFFCQGGIRRHFEALGYTNFIHRKRDFYADVEAGNLPKYDVLVTNPPYSEDHKERILEFCLRSGKPWALLMPNYVATKAYFAELLDATSTPAPQRPFFLTPHTRYEYEHPEGTGHAESPFFSIWYVGLGPHTEPVFQACRARTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPWGVDLARGVEHLKAAGAVPTARRPNPRQRRKIKEQMAA 523          
BLAST of mRNA_C-linearis_contig99.17158.1 vs. uniprot
Match: A0A835SNK2_CHLIN (Uncharacterized protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835SNK2_CHLIN)

HSP 1 Score: 201 bits (510), Expect = 5.050e-56
Identity = 107/246 (43.50%), Postives = 140/246 (56.91%), Query Frame = 1
Query:  418 PFPTEYGDHFETPLQAYRDIEGPLALLSKLLGKKRKHLRIWDPYYCAGRTPRLLRQLGFPKVEHSNQDFYKLAREKKQPKHDVLVTNPPYSGDHKKRCLEYCRASGKPWFLLVPNYVATKDYYRLAVLGPAAGPGGEPFYVVPESKYSFDHPEGTGYADSPFSGVWYVQCGSHTEAVFQGATAEKRGG-------------------------VSVLRSLDELSQTGAVATARRLNPRQRKALKKK 1080
            PF  +Y DHFET   A  DI+  L  L K L K    L ++DP++C G   R     GF    H  +DFY      + P++D++VTNPPYS DHK+R L++C  SGKPW LL+PNYVATK YY   V      P   PFY+ P ++Y+++HPEGTG+A+SPF  +WYV  G+HTEAV+ GA   K                            V++ RS+D L +  AV TA+RLNP+QR  LKKK
Sbjct:  161 PFEVDYNDHFETSAAAVDDIQPVLLALCKRLKKTPAQLAVYDPFFCQGGIRRHYTARGFTNFIHRKRDFYADVESGQLPEYDIMVTNPPYSADHKERILDFCLRSGKPWALLLPNYVATKAYYSELVDEAGTPPQQRPFYLTPVTRYAYEHPEGTGHAESPFYSIWYVGLGAHTEAVY-GACRTKLDSPGPAAAXXXXXXXXXXXXXXXXSWAVTLARSVDALREAKAVPTAKRLNPKQRARLKKK 405          
BLAST of mRNA_C-linearis_contig99.17158.1 vs. uniprot
Match: A0A7R9V2F9_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9V2F9_9CHLO)

HSP 1 Score: 195 bits (495), Expect = 6.100e-55
Identity = 100/230 (43.48%), Postives = 142/230 (61.74%), Query Frame = 1
Query:  418 PFPTEYGDHFETPLQAYRDIEGPLALLSKLLGKKRKHLRIWDPYYCAGRTPRLLRQLGFPKVEHSNQDFYKLAREKKQPKHDVLVTNPPYSGDHKKRCLEYCRASGKPWFLLVPNYVATKDYYR--LAVLGPAAGPGGEPFYVVPESKYSFDHPEGTGYADSPFSGVWYVQCGSHTEAVFQ--GATAEKRGGVS--VLRSLDELSQTGAVATARRLNPRQRKALKKKRSA 1089
            P+PT+Y DHFET  +A  D+E  L  L+  LGK +  L ++DPYYC G   +   Q+G  ++ H  +DFY   +    P++D+LVTNPPYSGDHK+R L++C  SGK W LL+PNYVATK Y+    + L        EPF++VP  KY + HPEGTG++ SPF  +WY+   + T+ V         K+G  S  +LRS+ EL ++  V T +R NP+QRK ++K+  A
Sbjct:   82 PYPTDYLDHFETSKEAIADLEPALYRLATHLGKPKSELVVYDPYYCKGTIRQHWEQIGVKRLIHEKRDFYADVKSGSVPEYDILVTNPPYSGDHKERILQFCMESGKAWALLMPNYVATKLYFTSIASTLLQQESFSAEPFFLVPTIKYDYVHPEGTGHSSSPFFSIWYIHMANDTKRVLAWWDKLLSKKGTSSARLLRSVSELQESQCVPTGKRPNPKQRKKMRKEACA 311          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig99.17158.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7V7_ECTSI3.580e-15286.64Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6U0XTY6_9STRA7.470e-6649.15Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A8J4APU4_9CHLO2.710e-6346.64Uncharacterized protein n=1 Tax=Volvox africanus T... [more]
A0A2J8ADG8_9CHLO1.690e-6145.71Uncharacterized protein n=1 Tax=Tetrabaena sociali... [more]
A0A150GNL1_GONPE8.960e-5847.62Uncharacterized protein n=1 Tax=Gonium pectorale T... [more]
A0A7S1IGA0_9EUGL9.930e-5848.15Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A835SR82_9CHLO6.740e-5743.50Uncharacterized protein n=1 Tax=Chlamydomonas schl... [more]
A0A835Y0N0_9CHLO7.290e-5741.47Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
A0A835SNK2_CHLIN5.050e-5643.50Uncharacterized protein n=1 Tax=Chlamydomonas ince... [more]
A0A7R9V2F9_9CHLO6.100e-5543.48Hypothetical protein n=1 Tax=Chlamydomonas euryale... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig99contigC-linearis_contig99:239905..242714 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score451.4
Seed ortholog evalue3.5e-124
Seed eggNOG ortholog2880.D7G7V7
Hectar predicted targeting categoryother localisation
EggNOG OGs2BVHF@1,2S29B@2759
Ec32 ortholog descriptionS-adenosyl-L-methionine-dependent methyltransferase
Ec32 orthologEc-06_000150.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size1415
Cds size996
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig99.17158.1prot_C-linearis_contig99.17158.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig99 240210..242051 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930847.883035-UTR-C-linearis_contig99:239904..2402091622930847.883035-UTR-C-linearis_contig99:239904..240209Chordaria linearis ClinC8C monoicousUTRC-linearis_contig99 239905..240209 -
1690881280.5298882-UTR-C-linearis_contig99:239904..2402091690881280.5298882-UTR-C-linearis_contig99:239904..240209Chordaria linearis ClinC8C monoicousUTRC-linearis_contig99 239905..240209 -
1622930847.9454584-UTR-C-linearis_contig99:242051..2420981622930847.9454584-UTR-C-linearis_contig99:242051..242098Chordaria linearis ClinC8C monoicousUTRC-linearis_contig99 242052..242098 -
1690881280.574411-UTR-C-linearis_contig99:242051..2420981690881280.574411-UTR-C-linearis_contig99:242051..242098Chordaria linearis ClinC8C monoicousUTRC-linearis_contig99 242052..242098 -
1622930847.9639735-UTR-C-linearis_contig99:242647..2427141622930847.9639735-UTR-C-linearis_contig99:242647..242714Chordaria linearis ClinC8C monoicousUTRC-linearis_contig99 242648..242714 -
1690881280.5880969-UTR-C-linearis_contig99:242647..2427141690881280.5880969-UTR-C-linearis_contig99:242647..242714Chordaria linearis ClinC8C monoicousUTRC-linearis_contig99 242648..242714 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930847.8989112-CDS-C-linearis_contig99:240209..2404791622930847.8989112-CDS-C-linearis_contig99:240209..240479Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 240210..240479 -
1690881280.5427227-CDS-C-linearis_contig99:240209..2404791690881280.5427227-CDS-C-linearis_contig99:240209..240479Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 240210..240479 -
1622930847.9163392-CDS-C-linearis_contig99:240803..2410941622930847.9163392-CDS-C-linearis_contig99:240803..241094Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 240804..241094 -
1690881280.5536902-CDS-C-linearis_contig99:240803..2410941690881280.5536902-CDS-C-linearis_contig99:240803..241094Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 240804..241094 -
1622930847.9329054-CDS-C-linearis_contig99:241616..2420511622930847.9329054-CDS-C-linearis_contig99:241616..242051Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 241617..242051 -
1690881280.5638773-CDS-C-linearis_contig99:241616..2420511690881280.5638773-CDS-C-linearis_contig99:241616..242051Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 241617..242051 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig99.17158.1

>prot_C-linearis_contig99.17158.1 ID=prot_C-linearis_contig99.17158.1|Name=mRNA_C-linearis_contig99.17158.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=332bp
MDRNKIDMETGERTTTTKVGREGKEGKAPRKKSRSKKCRDTEHEHPSESD
VQSRQQCGGTGKAGEKAVVKGAGGGGAGAVAGKKRPREDATATQSSISKH
HPFPTEYGDHFETPLQAYRDIEGPLALLSKLLGKKRKHLRIWDPYYCAGR
TPRLLRQLGFPKVEHSNQDFYKLAREKKQPKHDVLVTNPPYSGDHKKRCL
EYCRASGKPWFLLVPNYVATKDYYRLAVLGPAAGPGGEPFYVVPESKYSF
DHPEGTGYADSPFSGVWYVQCGSHTEAVFQGATAEKRGGVSVLRSLDELS
QTGAVATARRLNPRQRKALKKKRSAAGSAGL*
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mRNA from alignment at C-linearis_contig99:239905..242714-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig99.17158.1 ID=mRNA_C-linearis_contig99.17158.1|Name=mRNA_C-linearis_contig99.17158.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2810bp|location=Sequence derived from alignment at C-linearis_contig99:239905..242714- (Chordaria linearis ClinC8C monoicous)
TCTCCTGTCACACTGCTGCGCACCCTACATACCTCGTTGGACATTGGCGG TGGGCTGGCAGGTAAACGTGAGCTCTATGTCGTATCGATGGGTAAAATTA CAGCTAAATGTAGTATTAGTCGAGGCTGGAAATCTGGAAATGTTGATTGA CTAAGTTTGTACGTTTGTAGTTCCTCGATAGGCTGGTGCCCAACTGCTGC CCACCAAGGTTGGTATGGGTTGGCAACGATGCCGTCAATGCGCCACTCAA CATCTTCCATAGGCTAGACTACAATGTCGCCACTGCTTTGCGCTTTGCTC TTTCTTGCGAGGAATATGTACAGCGCCAGTACATGCACGAAGCTCGCCGT GCCGAAACACTCTGCTGTGCTCTACTGTAGGGTGCCGCTCGCCCCTGATG CGTCTCACCAAACACCTCAAGCTCGGCACCTTCCGAAAAACTCGGCCTGC TCCTTCCCGACTTTACATTGCAAAGGGTAGACTACGAGGTACGAGGTCTA TGATCCAACGATACGACACCGTGACACCCGGCCCCGCCCCCCTTGTCCCA CCTGACCGGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC TCTCTCTCTTGTCCAGAAGGACTCTCATCACTTACGGAAACCCAGTGACA ACCTTGGAGTAAAATGGACAGAAATAAAATAGACATGGAGACGGGAGAAA GAACAACGACAACGAAGGTGGGGAGAGAGGGGAAAGAGGGGAAAGCACCT CGAAAGAAGAGCAGGAGCAAGAAGTGTCGCGATACTGAACACGAACACCC AAGCGAAAGCGACGTCCAAAGTAGGCAGCAGTGCGGTGGGACGGGCAAGG CCGGAGAGAAAGCAGTCGTGAAAGGAGCAGGCGGAGGAGGAGCAGGAGCA GTAGCAGGAAAGAAACGGCCTAGGGAGGATGCAACTGCTACTCAGAGCAG CATATCAAAGCACCACCCCTTCCCCACGGAATACGGCGACCACTTCGAAA CTCCGCTGCAAGCGTATCGAGACATCGAGGGGCCGCTGGCGTTGCTCTCC AAGCTGCTGGGGAAGAAGCGGAAGCATCTTCGAATCTGGGACCCTTACGT GAGAAAAAGAGAAGAGAGCAAGAGAGAAAGAGCCCTCAGGTCATGCACAA CCCCCAAGCCCATGCAACCACCACACACAGCGCAGAAAAGAAAAGCAACG GCGGCGGCGGCGGCGGCGGTAGAATCGTGCGCCGTGCCCACCCCTTACCC TTTCCCTTTCCCTATGGTGTGGCCCCACCAGGCTTATGCCGGTGTCTGCT GAGAGTGTGTACTTCAAGTACACGGCCACACACGATATGATAAAAGTATG AAACTGCGAAACGTGGCAACGCACCATACAGAACGCGTGACCTGCTTTTC AATTTCCTAAACTGGCAGGATTGTGGCAGGATTGTGACAGGAGTGATTGA TTCAATTGCCCCTTCTCTCGATACATGGCCGGTGGTTGCTGCCTGCCGCT CACACCATCCTCTCATGCCGCCCCTCCCTATCTTGCCTTCTGCCTTTGAC TTGTCTTTCAACCCACGGCCGGTACATGATGGTCATGATTTTGATGGTGA TGGTGATGGTCCTCCACCAGTACTGCGCGGGCCGAACCCCCCGCCTGCTA CGACAGCTGGGCTTCCCGAAGGTCGAGCACAGCAACCAAGACTTCTACAA GCTTGCCAGAGAGAAGAAGCAGCCAAAGCACGACGTCCTGGTGACCAACC CCCCTTACAGCGGGGATCACAAGAAGCGCTGCCTCGAGTACTGCAGGGCC TCCGGGAAGCCTTGGTTCCTGCTGGTGCCCAACTACGTGGCGACCAAGGA CTACTACCGCCTCGCCGTGCTCGGGCCGGCCGCCGGGCCTGGCGGGGAGC CGTTTTACGTGGTCAGTCAAGGCAGATTTTTAGATCATAGCCTGCCCTTA TTTGATTCAATTTGGGTATATTTGGCGTTGCCTCTGTTGTCAGTGTCAAG AGAAAAGTTGTGTATTTTTCAAATTTGTGTAGAACTTCAAGGCATACGGG GTGCTACATACGTGCGTTGGGAGGTACATACGTGCCGGCATGTGGAGAGA GAGGGTCGCTCTTTCTCTCTCACAATCTGTTGGTGTTGTACCTTGACCTG TCGATCGCCGCTGGCACTGGTATGTGTGTGTATCTACATAGTTCAGTCCG CGCCAACTGCCTCTCTCTCCCCCCTCCCTCTCCAGGTTCCGGAAAGCAAG TATTCTTTCGACCATCCGGAGGGCACTGGGTACGCAGACTCGCCGTTTTC CGGGGTGTGGTACGTGCAGTGCGGGAGCCACACGGAGGCCGTGTTCCAAG GCGCAACGGCTGAGAAACGGGGGGGTGTTTCGGTGCTGAGGTCTCTCGAC GAACTCAGCCAGACAGGAGCAGTGGCGACTGCTAGAAGATTAAATCCACG GCAGCGGAAAGCGCTAAAGAAGAAGCGGAGCGCTGCCGGGTCTGCGGGGC TTTAGTTGGGGGGAAAATCGTCATCAAATTAGGGCTGCTGGAGTCGACTC TATTCTAGCGTTGTTGCCACCGAGTCTCTGCACGTGCGTAAATTTAGATG TAGTAAAAGTCGGGAGAGTCTTTGTTGTAGTAGGCGGGCGCAGGTGCACT AGTCTCTTTGGTCTTTGTTCCTGCAACTGCAGGCGATACAAACTTTGGGG GGGTCGCAAGCCAGTAGGGAAAGTTGCACCCTCTTTTAGTGGCGTCCTAT CGACACAAGGCAAAACTTTGAAAAAATTATTTGTACCCAAAGCGGTGTTG GGAAGGCCAA
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Coding sequence (CDS) from alignment at C-linearis_contig99:239905..242714-

>mRNA_C-linearis_contig99.17158.1 ID=mRNA_C-linearis_contig99.17158.1|Name=mRNA_C-linearis_contig99.17158.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1992bp|location=Sequence derived from alignment at C-linearis_contig99:239905..242714- (Chordaria linearis ClinC8C monoicous)
ATGGACAGAAATAAAATAGACATGGAGACGGGAGAAAGAACAACGACAAC
GAAGGTGGGGAGAGAGGGGAAAGAGGGGAAAGCACCTCGAAAGAAGAGCA
GGAGCAAGAAGTGTCGCGATACTGAACACGAACACCCAAGCGAAAGCGAC
GTCCAAAGTAGGCAGCAGTGCGGTGGGACGGGCAAGGCCGGAGAGAAAGC
AGTCGTGAAAGGAGCAGGCGGAGGAGGAGCAGGAGCAGTAGCAGGAAAGA
AACGGCCTAGGGAGGATGCAACTGCTACTCAGAGCAGCATATCAAAGCAC
CACCCCTTCCCCACGGAATACGGCGACCACTTCGAAACTCCGCTGCAAGC
GTATCGAGACATCGAGGGGCCGCTGGCGTTGCTCTCCAAGCTGCTGGGGA
AGAAGCGGAAGCATCTTCGAATCTGGGACCCTTACATGGACAGAAATAAA
ATAGACATGGAGACGGGAGAAAGAACAACGACAACGAAGGTGGGGAGAGA
GGGGAAAGAGGGGAAAGCACCTCGAAAGAAGAGCAGGAGCAAGAAGTGTC
GCGATACTGAACACGAACACCCAAGCGAAAGCGACGTCCAAAGTAGGCAG
CAGTGCGGTGGGACGGGCAAGGCCGGAGAGAAAGCAGTCGTGAAAGGAGC
AGGCGGAGGAGGAGCAGGAGCAGTAGCAGGAAAGAAACGGCCTAGGGAGG
ATGCAACTGCTACTCAGAGCAGCATATCAAAGCACCACCCCTTCCCCACG
GAATACGGCGACCACTTCGAAACTCCGCTGCAAGCGTATCGAGACATCGA
GGGGCCGCTGGCGTTGCTCTCCAAGCTGCTGGGGAAGAAGCGGAAGCATC
TTCGAATCTGGGACCCTTACTACTGCGCGGGCCGAACCCCCCGCCTGCTA
CGACAGCTGGGCTTCCCGAAGGTCGAGCACAGCAACCAAGACTTCTACAA
GCTTGCCAGAGAGAAGAAGCAGCCAAAGCACGACGTCCTGGTGACCAACC
CCCCTTACAGCGGGGATCACAAGAAGCGCTGCCTCGAGTACTGCAGGGCC
TCCGGGAAGCCTTGGTTCCTGCTGGTGCCCAACTACGTGGCGACCAAGGA
CTACTACCGCCTCGCCGTGCTCGGGCCGGCCGCCGGGCCTGGCGGGGAGC
CGTTTTACGTGTACTGCGCGGGCCGAACCCCCCGCCTGCTACGACAGCTG
GGCTTCCCGAAGGTCGAGCACAGCAACCAAGACTTCTACAAGCTTGCCAG
AGAGAAGAAGCAGCCAAAGCACGACGTCCTGGTGACCAACCCCCCTTACA
GCGGGGATCACAAGAAGCGCTGCCTCGAGTACTGCAGGGCCTCCGGGAAG
CCTTGGTTCCTGCTGGTGCCCAACTACGTGGCGACCAAGGACTACTACCG
CCTCGCCGTGCTCGGGCCGGCCGCCGGGCCTGGCGGGGAGCCGTTTTACG
TGGTTCCGGAAAGCAAGTATTCTTTCGACCATCCGGAGGGCACTGGGTAC
GCAGACTCGCCGTTTTCCGGGGTGTGGTACGTGCAGTGCGGGAGCCACAC
GGAGGCCGTGTTCCAAGGCGCAACGGCTGAGAAACGGGGGGGTGTTTCGG
TGCTGAGGTCTCTCGACGAACTCAGCCAGACAGGAGCAGTGGCGACTGCT
AGAAGATTAAATCCACGGCAGCGGAAAGCGCTAAAGAAGAAGCGGAGCGC
TGCCGGGTCTGCGGGGCTTTAGGTTCCGGAAAGCAAGTATTCTTTCGACC
ATCCGGAGGGCACTGGGTACGCAGACTCGCCGTTTTCCGGGGTGTGGTAC
GTGCAGTGCGGGAGCCACACGGAGGCCGTGTTCCAAGGCGCAACGGCTGA
GAAACGGGGGGGTGTTTCGGTGCTGAGGTCTCTCGACGAACTCAGCCAGA
CAGGAGCAGTGGCGACTGCTAGAAGATTAAATCCACGGCAGCGGAAAGCG
CTAAAGAAGAAGCGGAGCGCTGCCGGGTCTGCGGGGCTTTAG
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