mRNA_C-linearis_contig99.17153.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig99.17153.1
Unique NamemRNA_C-linearis_contig99.17153.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig99.17153.1 vs. uniprot
Match: D7G7W2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7W2_ECTSI)

HSP 1 Score: 202 bits (514), Expect = 3.620e-58
Identity = 144/309 (46.60%), Postives = 165/309 (53.40%), Query Frame = 1 
Query:   64 TNTRKRGAAFLLEKPLVSRLPFEVEQHFSSAFPPPKRVKPAPTRCWRDDNLDKDPC-TDVQSETSGMQEFRQ---REEV----------------AAADVEVEVGGEKGCWL-------TGGRDKLSGGGEHEEK-VRE-LRVAATGVPATGAAAGNSAMVQLKIDAMFAAPRIPPKETKDCSAHPNQKLELDLDAPPPGDSECAGATRKADRGMDVDRGVAGADXXXXXXXXXXGSSCYACRGSLGTGTEGGDVLCAFCDRVACQGCWQKCYACEVPHCSLCLAADYSSQFECFFCPPCNQDRRLESC 903
            + TRKRGA F+ EKPLVSRLPFEVE          KR + A T           P   D+   TS   E +Q   RE +                A A V  +V  E+GCW         G RD  +G     EK  RE L   A    ATG A     +VQLKIDAMFA P +P     +CS   N   EL        D ECAG T + D  MDVD GV GA+          G +CYACRG+LGT   GGD+LC+FCDR ACQ CWQ+C ACEVPHCSLCLAADY+SQFEC+FCPPC QD RLESC
Sbjct:    4 STTRKRGAFFVFEKPLVSRLPFEVE--VDGGVLAKKRARIAATXXXXXXXXXSPPAHEDLDVNTSENFETKQWWTREALQERHRXXXXXXXXXXXAIAAVGADV--ERGCWSGGIWGAREGRRDTRAGTRPSLEKGERECLDEEAVSTAATGGAGAGRTLVQLKIDAMFAVPGLPCTPPSECSGR-NPDAEL-------CDGECAGTTSRGDGAMDVDVGV-GAEPREEG-----GPACYACRGALGT--AGGDILCSFCDRAACQACWQRCSACEVPHCSLCLAADYNSQFECYFCPPCYQDERLESC 292
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BLAST of mRNA_C-linearis_contig99.17153.1 vs. uniprot
Match: A0A6H5LJI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJI1_9PHAE)

HSP 1 Score: 193 bits (491), Expect = 9.360e-55
Identity = 136/311 (43.73%), Postives = 166/311 (53.38%), Query Frame = 1 
Query:   64 TNTRKRGAAFLLEKPLVSRLPFEVEQHFSSAFPPPKRVKPAPTRCWRD---------DNLDKDPCTDVQSE----TSGMQEFRQREEV-------AAADVEVEVGGEKGCWLTG--------GRDKLSGGGEHEEKVREL--RVAATGVPATGAAAGNSAMVQLKIDAMFAAPRIPPKETKDCSAH-PNQKLELDLDAPPPGDSECAGATRKADRGMDVDRGVAGADXXXXXXXXXXGSSCYACRGSLGTGTEGGDVLCAFCDRVACQGCWQKCYACEVPHCSLCLAADYSSQFECFFCPPCNQDRRLESC 903
            + TRKRGA ++ EKPLVSRLPFE E          KRV+ A T              ++LD +   +V+++       +QE  + EE        A A V  +VG  +GCWL G        GRD   G     E+V        A    ATG A     +VQLKIDAMFA P +P     +CS    N +L          D ECA  T + D  MDVD GV GA+          G +CYACRG+LGT   GGD+LC+FCDR ACQ CWQ+C AC VPHCSLCLAADY+SQFEC+FCP C QD+RLE C
Sbjct:    4 STTRKRGAFYVFEKPLVSRLPFEAEVDAGGLAR--KRVRIAATTTTETTRPPSPPAHEDLDVNTSENVETQHWWTREALQERHRGEEADSCSSSSAIAPVGADVG--RGCWLGGRWGAREGSGRDTRGGTRPSMERVEPECPDKQAVSTAATGGAGPGRTLVQLKIDAMFAVPGLPCTPPSECSGRIANAEL---------CDGECARTTCRGDGAMDVDVGV-GAEPGEEG-----GPACYACRGALGT--AGGDILCSFCDRAACQACWQRCSACGVPHCSLCLAADYNSQFECYFCPSCYQDKRLECC 293
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig99.17153.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G7W2_ECTSI3.620e-5846.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LJI1_9PHAE9.360e-5543.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig99contigC-linearis_contig99:220683..222770 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSiva
Ec32 orthologEc-06_000100.1
Exons2
Model size1366
Cds size849
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig99.17153.1prot_C-linearis_contig99.17153.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig99 220740..222310 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930847.2520814-UTR-C-linearis_contig99:220682..2207391622930847.2520814-UTR-C-linearis_contig99:220682..220739Chordaria linearis ClinC8C monoicousUTRC-linearis_contig99 220683..220739 +
1690881280.2045207-UTR-C-linearis_contig99:220682..2207391690881280.2045207-UTR-C-linearis_contig99:220682..220739Chordaria linearis ClinC8C monoicousUTRC-linearis_contig99 220683..220739 +
1622930847.3125653-UTR-C-linearis_contig99:222310..2227701622930847.3125653-UTR-C-linearis_contig99:222310..222770Chordaria linearis ClinC8C monoicousUTRC-linearis_contig99 222311..222770 +
1690881280.2395484-UTR-C-linearis_contig99:222310..2227701690881280.2395484-UTR-C-linearis_contig99:222310..222770Chordaria linearis ClinC8C monoicousUTRC-linearis_contig99 222311..222770 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930847.2736037-CDS-C-linearis_contig99:220739..2211331622930847.2736037-CDS-C-linearis_contig99:220739..221133Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 220740..221133 +
1690881280.216459-CDS-C-linearis_contig99:220739..2211331690881280.216459-CDS-C-linearis_contig99:220739..221133Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 220740..221133 +
1622930847.2872646-CDS-C-linearis_contig99:221855..2223101622930847.2872646-CDS-C-linearis_contig99:221855..222310Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 221856..222310 +
1690881280.2272027-CDS-C-linearis_contig99:221855..2223101690881280.2272027-CDS-C-linearis_contig99:221855..222310Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 221856..222310 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig99.17153.1

>prot_C-linearis_contig99.17153.1 ID=prot_C-linearis_contig99.17153.1|Name=mRNA_C-linearis_contig99.17153.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=283bp
MATNTRKRGAAFLLEKPLVSRLPFEVEQHFSSAFPPPKRVKPAPTRCWRD
DNLDKDPCTDVQSETSGMQEFRQREEVAAADVEVEVGGEKGCWLTGGRDK
LSGGGEHEEKVRELRVAATGVPATGAAAGNSAMVQLKIDAMFAAPRIPPK
ETKDCSAHPNQKLELDLDAPPPGDSECAGATRKADRGMDVDRGVAGADAG
EGEGEGEGGSSCYACRGSLGTGTEGGDVLCAFCDRVACQGCWQKCYACEV
PHCSLCLAADYSSQFECFFCPPCNQDRRLESC*
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mRNA from alignment at C-linearis_contig99:220683..222770+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig99.17153.1 ID=mRNA_C-linearis_contig99.17153.1|Name=mRNA_C-linearis_contig99.17153.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2088bp|location=Sequence derived from alignment at C-linearis_contig99:220683..222770+ (Chordaria linearis ClinC8C monoicous)
GTGTGTCGCACCAAGAACTCCCAGCTACGCCTACCTACCGACGAACGTGT
ATCGCTGATGGCGACGAACACGAGAAAGAGAGGGGCGGCGTTTCTGCTGG
AGAAGCCTCTGGTTTCGCGCCTCCCTTTCGAGGTGGAGCAGCATTTCTCG
AGCGCTTTCCCGCCTCCCAAGCGAGTGAAGCCAGCACCAACACGTTGTTG
GCGCGATGACAACCTTGACAAGGACCCTTGTACGGATGTTCAGAGCGAGA
CCAGCGGCATGCAGGAATTTCGCCAGAGAGAGGAGGTTGCTGCCGCTGAT
GTGGAAGTGGAAGTCGGTGGTGAAAAGGGCTGTTGGTTGACGGGAGGCAG
GGATAAACTTAGCGGCGGTGGCGAGCACGAGGAGAAGGTGCGAGAGCTAC
GCGTAGCAGCAACAGGGGTACCAGCAACAGGGGCAGCAGCGGGCAACTCA
GGTGAGCTTAGAGGAAGTGACGGAAAACACGGGTGATGTTTTGTGGAGGA
CGTCGGTACCGCGATTGCAGTCGAGGAAGGGAAAGAGAGCCATGCACAAC
AGACACTAGTGCCGTTTCCGGAGTATTTCAAAATTTCAGTTCAAATCCAT
CTCGCCGCTCGCCATCACTCAAGCAAAGCCCTGTCATAGAGGTCCAAAGG
AGAGCAGGGTCCGCCTGTCTTGGGTTGACCACAGACACGCCTAGTACGAG
ATAAGAGGAAAACACCAGAGTCTCTCGGGCATCTTATCTTATGCATTCTG
GTCGCCTTCTTTGTTCGGTGATGTGCTCTGCTCTTCAGAAACTCCGCTGC
TCTTCAAACTCAAAACTGACGAAGCCTGTGCGATTGGCGCAATCATACAT
AGCTCTCGGTTGTTGTGCTCAGCCCTGTTGCCGCCCGCAATTGATAAGCA
ATGTAGTTTACAGTTATACTAAGGCAAATATTTTTGCCGTTAAGTATCGT
TGATATCTGTTATTCTTACATCGCAACCAAGGTACACATCAGTAGTCTAC
CGATCTGGTTTGAAGAATTCCAAGCCTTGAGAACGGTGAGTCTACACCCA
CCCTTCGCGCGTGCGCCTATGATCTTTAACCGTTCCCCTTCTCTGTCTCT
GTCTCTCTGTCCCTATGTGTGTGTGTGTGTGTGTGTGTGCTTGTTCTGCG
TGCCTTGCTAGGACCCCGGCGAGCTATGGTGCAGCTCAAAATCGACGCCA
TGTTTGCGGCGCCCAGAATACCGCCGAAAGAAACTAAAGATTGCTCAGCC
CACCCCAACCAAAAATTAGAATTAGATTTGGACGCCCCCCCCCCAGGAGA
CTCCGAATGTGCTGGAGCTACGAGGAAAGCAGACCGGGGAATGGATGTTG
ACAGGGGGGTAGCTGGAGCAGATGCTGGGGAAGGGGAAGGGGAGGGGGAG
GGTGGATCCTCTTGCTATGCTTGCCGGGGCAGCCTAGGGACAGGAACAGA
GGGTGGGGACGTCTTGTGTGCGTTTTGCGATCGCGTCGCGTGCCAGGGGT
GCTGGCAGAAGTGTTACGCGTGCGAGGTGCCACACTGCAGCTTGTGTTTA
GCGGCGGACTATAGCTCGCAGTTCGAGTGCTTTTTCTGTCCGCCTTGCAA
TCAGGACCGGCGACTTGAGTCGTGCTAGGTGCTTTTTCTAGGAAGCAATA
TAGATCGGAGAGCGCTTTGTGGCAGGGTTAGGGGCTTCTGCTGCTGAAGG
GGAGGGGATGTGTTCCCAGGACCACGCAAGTTGTTGCGTTCGGGTGTCGA
AATCCACAAGTCAACGGTCACGATAGGCTGTCGGGTGTAGTACTCACAGT
TTTTTGTGAGTTGATAGCGTGAACTTGCAAGCTGTCCCCACTCCATGTAC
AGCAGTCTAAGGTCGTAAGCGCGAAAGATGGTTGTTGGTTGTTGTGTTTC
CCCAAAACAAATGTTGACGTTGCGTTTACTGAAGTTCAAGTCCGGGTCAA
CGCCGTTGCTATAAGGTGGATCCCTCCTGCGTTTGATCGTCCGTTCAGAC
AATAACAGTTTTTTTTTCTCGCTGTGATCGAGGGCGCTGTAGCCGCACGA
CTGGTGCACTGCTGTACATGGTACGCATCATGTGCGGT
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Coding sequence (CDS) from alignment at C-linearis_contig99:220683..222770+

>mRNA_C-linearis_contig99.17153.1 ID=mRNA_C-linearis_contig99.17153.1|Name=mRNA_C-linearis_contig99.17153.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1698bp|location=Sequence derived from alignment at C-linearis_contig99:220683..222770+ (Chordaria linearis ClinC8C monoicous)
ATGGCGACGAACACGAGAAAGAGAGGGGCGGCGTTTCTGCTGGAGAAGCC
TCTGGTTTCGCGCCTCCCTTTCGAGGTGGAGCAGCATTTCTCGAGCGCTT
TCCCGCCTCCCAAGCGAGTGAAGCCAGCACCAACACGTTGTTGGCGCGAT
GACAACCTTGACAAGGACCCTTGTACGGATGTTCAGAGCGAGACCAGCGG
CATGCAGGAATTTCGCCAGAGAGAGGAGGTTGCTGCCGCTGATGTGGAAG
TGGAAGTCGGTGGTGAAAAGGGCTGTTGGTTGACGGGAGGCAGGGATAAA
CTTAGCGGCGGTGGCGAGCACGAGGAGAAGGTGCGAGAGCTACGCGTAGC
AGCAACAGGGGTACCAGCAACAGGGGCAGCAGCGGGCAACTCAGATGGCG
ACGAACACGAGAAAGAGAGGGGCGGCGTTTCTGCTGGAGAAGCCTCTGGT
TTCGCGCCTCCCTTTCGAGGTGGAGCAGCATTTCTCGAGCGCTTTCCCGC
CTCCCAAGCGAGTGAAGCCAGCACCAACACGTTGTTGGCGCGATGACAAC
CTTGACAAGGACCCTTGTACGGATGTTCAGAGCGAGACCAGCGGCATGCA
GGAATTTCGCCAGAGAGAGGAGGTTGCTGCCGCTGATGTGGAAGTGGAAG
TCGGTGGTGAAAAGGGCTGTTGGTTGACGGGAGGCAGGGATAAACTTAGC
GGCGGTGGCGAGCACGAGGAGAAGGTGCGAGAGCTACGCGTAGCAGCAAC
AGGGGTACCAGCAACAGGGGCAGCAGCGGGCAACTCAGCTATGGTGCAGC
TCAAAATCGACGCCATGTTTGCGGCGCCCAGAATACCGCCGAAAGAAACT
AAAGATTGCTCAGCCCACCCCAACCAAAAATTAGAATTAGATTTGGACGC
CCCCCCCCCAGGAGACTCCGAATGTGCTGGAGCTACGAGGAAAGCAGACC
GGGGAATGGATGTTGACAGGGGGGTAGCTGGAGCAGATGCTGGGGAAGGG
GAAGGGGAGGGGGAGGGTGGATCCTCTTGCTATGCTTGCCGGGGCAGCCT
AGGGACAGGAACAGAGGGTGGGGACGTCTTGTGTGCGTTTTGCGATCGCG
TCGCGTGCCAGGGGTGCTGGCAGAAGTGTTACGCGTGCGAGGTGCCACAC
TGCAGCTTGTGTTTAGCGGCGGACTATAGCTCGCAGTTCGAGTGCTTTTT
CTGTCCGCCTTGCAATCAGGACCGGCGACTTGAGTCGTGCTAGCTATGGT
GCAGCTCAAAATCGACGCCATGTTTGCGGCGCCCAGAATACCGCCGAAAG
AAACTAAAGATTGCTCAGCCCACCCCAACCAAAAATTAGAATTAGATTTG
GACGCCCCCCCCCCAGGAGACTCCGAATGTGCTGGAGCTACGAGGAAAGC
AGACCGGGGAATGGATGTTGACAGGGGGGTAGCTGGAGCAGATGCTGGGG
AAGGGGAAGGGGAGGGGGAGGGTGGATCCTCTTGCTATGCTTGCCGGGGC
AGCCTAGGGACAGGAACAGAGGGTGGGGACGTCTTGTGTGCGTTTTGCGA
TCGCGTCGCGTGCCAGGGGTGCTGGCAGAAGTGTTACGCGTGCGAGGTGC
CACACTGCAGCTTGTGTTTAGCGGCGGACTATAGCTCGCAGTTCGAGTGC
TTTTTCTGTCCGCCTTGCAATCAGGACCGGCGACTTGAGTCGTGCTAG
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