mRNA_C-linearis_contig99.17144.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig99.17144.1
Unique NamemRNA_C-linearis_contig99.17144.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig99.17144.1 vs. uniprot
Match: D7FS84_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS84_ECTSI)

HSP 1 Score: 236 bits (602), Expect = 3.170e-73
Identity = 128/303 (42.24%), Postives = 185/303 (61.06%), Query Frame = 1
Query:   28 MNKSGRSTIKAILAKHMRHTRGSFRIYSQLLYGEGEDRLKTFLSQNATVVAGGYTEALRPFGGGD--DCKWFTMFRHPISRVISACLYCKSEPSELLCGTAVLQAN--ETDFHTFAEHWGNYGLRQYAMAFVDQDDLLSLEVK---PGVCTP-----ECPAWYRAKVYFEGLHADSTRQDKLLNESG---LLEGDAAMANLFEPVTNLLSTRYAAVGILEEWEKSMVLFDHALELLKLNWSKSSARSRAKNKGRGIFSKEKDDLLRTAWNDERLKRSISLDLLLYDHAVGVFEQQMQGYGMME 891
            MNK+G ST+K +LA   +    +  +Y    + EG+D  + FL    +++ G YTE LRPFGG    +CKWFT+FRHPI R++SA  YCK +P + LC T  L AN  +TD + FAEHWG++GLRQ+A+AFV  ++LL+ +VK    G+CTP      CP WY  K+Y +    +  + +      G      G A +++L +PV  LL+  YAAVG+LE+WE S++LF+ AL +   +W ++      KN   G F  E+ ++L  +W D RL+R +SLDLLLYD+AV V  QQ+  YG+ E
Sbjct:    1 MNKAGGSTVKYMLAPWTKAQNVTVGLYDSPQWLEGKDFAQDFLGDENSLMWGAYTEGLRPFGGLGLRECKWFTIFRHPIPRLVSAYFYCKKKPQDGLCATVALDANADDTDLYAFAEHWGDFGLRQFALAFVLPEELLANKVKYDATGICTPYHGKRSCPGWYELKLYLQQQLDEQEQGEGSRGWDGSGAAASGAATISHLLQPVQELLTNEYAAVGVLEQWETSLLLFNEALGMPGFDWPETFGSIGKKNSD-GTFHNEEAEMLLRSWTDPRLRRYLSLDLLLYDYAVSVHNQQVDKYGLGE 302          
BLAST of mRNA_C-linearis_contig99.17144.1 vs. uniprot
Match: A0A6H5JY77_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY77_9PHAE)

HSP 1 Score: 229 bits (585), Expect = 3.590e-70
Identity = 119/300 (39.67%), Postives = 164/300 (54.67%), Query Frame = 1
Query:   10 CWIFTHMNKSGRSTIKAILAKHMRHTRGSFRIYSQLLYGEGEDRLKTFLSQNATVVAGGYTEALRPFGGGDDCKWFTMFRHPISRVISACLYCKSEPSELLCGTAVLQANETDFHTFAEHWGNYGLRQYAMAFVDQDDLLSLEVKPGVCTPE-------CPAWYRAKVYFEGLHADSTRQDKLLNESGLLEGDAAMANLFEPVTNLLSTRYAAVGILEEWEKSMVLFDHALELLKLNWSKSSARSRAKNKGRGIFSKEKDDLLRTAWNDERLKRSISLDLLLYDHAVGVFEQQMQGYGMM 888
            CW+F+HMNKSG  T++ ++   +     S  ++  + +  G    +TF+ +NA    GGYTE LR +   D CKWFT+FRHP+SRV+SA  YC+    + LC   VL A++ D  TFAEHWGNYGLRQ+A+A +  +D+   EV    C           PAWYR K Y    H D           G  + ++ +A         LSTRYAAVGI+EEW+ SM LF+  L L + +W K   +S  KN G   F       L+ AW+   LK+ I LD+LLYDHA+ V   Q+   G++
Sbjct:   52 CWVFSHMNKSGGMTVRKMIMPFLTEKGVSTALFDDIEWSSGRSYAETFVKENAVFTYGGYTEGLRMYDDRD-CKWFTVFRHPVSRVVSAYFYCQRAHHDQLCAAVVLDASKVDLLTFAEHWGNYGLRQFALASIKAEDVFHNEVVSEFCQQARGHGDVCIPAWYRQKHYLHLPHQDDF--------CGPTQPESGLAQFLSSAQETLSTRYAAVGIIEEWDNSMELFNRVLNLRRFDWVKEFQKSGKKNSGGSQFETASKSALKAAWHSPELKKFIWLDILLYDHALSVHRSQVADLGIV 342          
BLAST of mRNA_C-linearis_contig99.17144.1 vs. uniprot
Match: A0A6H5JQY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQY7_9PHAE)

HSP 1 Score: 229 bits (583), Expect = 3.740e-70
Identity = 121/296 (40.88%), Postives = 179/296 (60.47%), Query Frame = 1
Query:    1 PKGCWIFTHMNKSGRSTIKAILAKHMRHTRGSFRIYSQLLYGEGEDRLKTFLSQNATVVAGGYTEALRPFGGGDDCKWFTMFRHPISRVISACLYCKSEPSELLCGTAVLQANETDFHTFAEHWGNYGLRQYAMAFVDQDDLLSLEVKPGVCTPECPAWYRAKVYFEGLHADSTRQDKLLNESGL-LEGDAAMANLFEPVTNLLSTRYAAVGILEEWEKSMVLFDHALELLKLNWSKSSARSRAKNKGRGIFSKEKDDLLRTAWNDERLKRSISLDLLLYDHAVGVFEQQMQGYGM 885
            P  CW++T MNK+G ++I+ ++  +   T  +   ++   Y  G+  ++  L +  +++ G YTE LRP+     CKWFTM RHPI+R++SA  YC   PS+ LC T + +  + D + FAEHWGN+G+ Q+A+AF D +D+L  EVK        P WY+AK+YFEG    S +     N S   +  +  M  + +PV  LL ++YAAVGILE+WE SM+LFDHAL+L   NW+ +SA S  +N      SK K+DLL  +  D  LK+ + LD+LLY+HA  V + Q+  YG+
Sbjct:   34 PPACWVYTDMNKAGGTSIRRMIKDYAAATNTTVGEFTHTQYNAGDRGVQQILDRRPSLIWGAYTEGLRPYATVLGCKWFTMVRHPIARLVSAFNYCGIVPSDQLCATRIHKPEDGDIYDFAEHWGNHGVVQFALAFEDLNDILVTEVKS-------PPWYKAKLYFEGRLGPSGKTSTSANISTKDVCQNVWMPEILQPVEELLRSKYAAVGILEQWETSMMLFDHALQLPGFNWTSTSASSTPRNVH---DSKAKNDLLVASMTDPVLKQILWLDILLYEHACSVHKAQLSRYGL 319          
BLAST of mRNA_C-linearis_contig99.17144.1 vs. uniprot
Match: A0A6H5JNJ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNJ0_9PHAE)

HSP 1 Score: 205 bits (521), Expect = 8.140e-61
Identity = 109/293 (37.20%), Postives = 164/293 (55.97%), Query Frame = 1
Query:   10 CWIFTHMNKSGRSTIKAILAKHMRHTRGSFRIYSQLLYGEGEDRLKTFLSQNATVVAGGYTEALRPFGGGDDCKWFTMFRHPISRVISACLYCKSEPSELLCGTAVLQANETDFHTFAEHWGNYGLRQYAMAFVDQDDLLSLEVKPGVCTPECPAWYRAKVYFEGLHADSTRQDKLLNESGLLEGDAA-MANLFEPVTNLLSTRYAAVGILEEWEKSMVLFDHALELLKLNWSKSSARSRAKNKGRGIFSKEKDDLLRTAWNDERLKRSISLDLLLYDHAVGVFEQQMQGYGM 885
            CW+FTH NK+G +T+K  L  +      +  +     Y  G+  ++  L+    ++AGGY E LR       CKWFTM RHPI+R+ISA  YC     + LC   + +  + D + FA+HWGNY L Q+A+  VDQ ++ + EV       + PAW++AK+YFEG            N +   E  +  + ++ +PV  LL + YAAVGILE W++SM+LFDHALE+   NW+ +SA    +     I   EK  +L  A  D  L++ + LDLLLY++A  + E+Q++ Y +
Sbjct:   37 CWVFTHNNKAGGTTVKTHLRNYAESRNETVALCHSDWYARGDKGIQDLLNDKPVLIAGGYAEGLRT-SAFQGCKWFTMMRHPIARLISAFYYCSGGNRDQLCAANIHKPEDGDIYDFAKHWGNYALLQFALGVVDQHEIFAEEV-------DAPAWFKAKLYFEGRLGYPGNMSTATNRTTHDEWQSVWIPDILQPVEELLRSNYAAVGILEHWQRSMMLFDHALEIPGFNWTVASASLSPRKSQNKIV--EKKAMLAAAMTDPVLRQYVWLDLLLYEYACSLHEEQLRRYDL 319          
BLAST of mRNA_C-linearis_contig99.17144.1 vs. uniprot
Match: D7FWQ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWQ3_ECTSI)

HSP 1 Score: 196 bits (497), Expect = 1.050e-55
Identity = 123/326 (37.73%), Postives = 180/326 (55.21%), Query Frame = 1
Query:    1 PKGCWIFTHMNKSGRSTIKAILAKHMRHTRGS-FRIYSQLLYGEGEDRLKTF---LSQNAT--VVAGGYTEALR---PFGGGDDCKWFTMFRHPISRVISACLYCKSEPSELLCGTAVLQANETDFHTFAEHWGNYGLRQYAMAFVDQDDLLSLEVKPGVCTPECPA-----------WYRAKVYFE-------GLHADSTRQDKLLNESGLLEGDAAMANLFEPVTNLLSTRYAAVGILEEWEKSMVLFDHALELLKLNWSKSSA---RSRAKNKGRGIFSKEKDDLLRTAWNDERLKRSISLDLLLYDHAVGVFEQQMQGYGMM 888
            P  CW+F H+ K G ST+K +L    R + GS + IY    +  G+D    F   L++  T  V+AGGYTEALR   P   G  C++FT+FRHPI+R++SA  YC+S   +  C + V+ A + D  TFA+HWGN+ +RQ+A+ FV  D      V+  + TPE  A           WY+ K+Y E       G+   S       + +  LE  A + +L +P  +L+ + Y AVGILE+W  ++ LFDHALE+  + W    A   + R   K + + S    + L+ AW D  LK+ + LDLLLY+HAV VF +Q +GYG++
Sbjct:  153 PDQCWVFMHLQKCGGSTVKYML----RRSYGSRYSIYDSNQWKLGDDISANFGVKLARGETWNVMAGGYTEALRRSEPVDAG--CRFFTLFRHPIARMVSAYFYCRSTLGDAACASEVVDAKDVDLLTFAKHWGNFAVRQFALGFVPSDG-----VQEYIRTPEAQALHDFDLKKIAGWYQLKMYLERPEKGDWGVPGQSEAMTVEHDAAATLE--APLYDLLQPAMDLIRSGYVAVGILEQWNTTLHLFDHALEIPGMYWGAQFAEGGKQRVDYKNKRLES----ETLKQAWTDSELKKYMRLDLLLYEHAVDVFHEQARGYGLL 461          
BLAST of mRNA_C-linearis_contig99.17144.1 vs. uniprot
Match: D7G716_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G716_ECTSI)

HSP 1 Score: 195 bits (495), Expect = 2.080e-55
Identity = 114/311 (36.66%), Postives = 170/311 (54.66%), Query Frame = 1
Query:    1 PKGCWIFTHMNKSGRSTIKAILAKHMRHTRGS-FRIYSQLLYGEGEDRLKTF-----LSQNATVVAGGYTEALR---PFGGGDDCKWFTMFRHPISRVISACLYCKSEPSELLCGTAVLQANETDFHTFAEHWGNYGLRQYAMAFVDQDDLLSLEVKPGVCTPECPAWYRAKVYFEGLHADS-----TRQDKLLNESGLLEGDAAMANLFEPVTNLLSTRYAAVGILEEWEKSMVLFDHALELLKLNWSKSSARSRAKNKGRGIFSKEKD-DLLRTAWNDERLKRSISLDLLLYDHAVGVFEQQMQGYGMM 888
            P  CW+F H+ K G ST+K +L        GS F IY  + +  G++    F     L     V+ GGYTEALR   P G G  C++FT+FRHPI+R++SA  YC+S   ++ C + V+QA + D  TFA+HWGN+ LRQ+A+ FV  DD+                 Y+ K+Y E    +       R+    ++      DA +  L +P  +L+   Y AVGILE+W  ++ LFDH L++  +NW +  A S   +    I +K+ + + L+ AW D  LK+ + LDLLLY+HAV VF QQ + +G++
Sbjct:  174 PGQCWVFMHLQKCGGSTVKDLLEDRW----GSRFFIYDSMRWKFGDEFSAKFGAKLALGDKWNVMTGGYTEALRLSEPVGAG--CRFFTLFRHPIARMVSAYFYCRSVSGDVACASEVMQAKDVDLLTFAKHWGNFALRQFALGFVPSDDVQE---------------YQLKMYLERPQKEDGGVLGQREAMTAHQDAAATPDAPLYELLQPAMDLVRDGYVAVGILEQWNTTLRLFDHTLDMPVMNWEEQFAESGKHHVD--IVNKQLEIETLQQAWTDSELKKYMRLDLLLYEHAVDVFHQQARSHGLL 461          
BLAST of mRNA_C-linearis_contig99.17144.1 vs. uniprot
Match: D7G715_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G715_ECTSI)

HSP 1 Score: 183 bits (464), Expect = 1.860e-51
Identity = 115/312 (36.86%), Postives = 165/312 (52.88%), Query Frame = 1
Query:   10 CWIFTHMNKSGRSTIKAILAKHMRHTRGSFRIYSQLLYGEG-EDRLKTFLSQNA--TVVAGGYTEALR--PFGGGDD----CKWFTMFRHPISRVISACLYCKSEPSELLCGTAVLQANETDFHTFAEHWGNYGLRQYAMAFVDQDDLLSLEVKP------GVCTPEC---PAWYRAKVYFEGLHADSTRQDKLLNESGLLEGDAAMANLFEPVTNLLSTRYAAVGILEEWEKSMVLFDHALELLKLNWSKSSARSRAKNKGRGIFSKEKDDLLRTAWNDERLKRSISLDLLLYDHAVGVFEQQMQGYGMME 891
            CWIF H+ K+G +T+K +L         ++  Y Q   G+G  + +   L+  A  +  AGGY EALR  P    DD    C+WFT+FRHP+SR++SA  YC+ +PS+ LC +  + +   D  TFA HWGN+ LRQ+A+ FV  D +    V P      G+   +    P WY  K++   L+  S   D    E   LE       +F PV +LL   YA VGILE+W  ++ LFD AL++  + W +   RS   N     F  EK D+L+ A +D  + + +SLDL LY  AV +F QQ   YG+ +
Sbjct:   88 CWIFNHLQKAGGTTVKRLLFDSWGSESTTYDSY-QWKKGQGYAESVAASLASPAGWSAAAGGYLEALRRTPAFQPDDERTPCRWFTVFRHPVSRLVSAYYYCREDPSDQLCASEFVSSRNVDLVTFARHWGNFALRQFALGFVSHDKVKDFLVSPNGGGAMGLTAEQVELMPGWYMLKLF---LNDRSGVADDTSPEGTRLE------YMFRPVVDLLRDNYAVVGILEDWNATLSLFDSALDMPGMTWREEFERSGKLNVDTR-FKGEKQDVLQQALSDPEIVKHLSLDLRLYGQAVDIFNQQRHSYGIAQ 388          
BLAST of mRNA_C-linearis_contig99.17144.1 vs. uniprot
Match: A0A6H5L061_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L061_9PHAE)

HSP 1 Score: 176 bits (445), Expect = 1.420e-50
Identity = 93/218 (42.66%), Postives = 136/218 (62.39%), Query Frame = 1
Query:  241 MFRHPISRVISACLYCKSEPSELLCGTAVLQANETDFHTFAEHWGNYGLRQYAMAFVDQDDLLSLEVKPGVCTPEC--PAWYRAKVYFEGLHADSTRQDKLLNESGLLEGDAAMANLFEPVTNLLSTRYAAVGILEEWEKSMVLFDHALELLKLNWSKSSARSRAKNKGRGIFSKEKDDLLRTAWNDERLKRSISLDLLLYDHAVGVFEQQMQGYGMM 888
             ++ PI R++SA  YCK    + LC + VL+A  TD HTFA+HWGNYGLRQ+++AFV  +D+ + E + G+       P WYR K YFE    D  ++  L+ E+G    D AM+ L +PV +LLS  Y+AVGILE+WE SM LF+ AL++   NW  +S     KN  + +  +E    LR AW+D  L +++ LD+ LYDHAV V  +Q++ +G++
Sbjct:   17 QYKCPIPRLVSAYFYCKQNGWDELCASMVLKAGNTDLHTFAKHWGNYGLRQFSLAFVGAEDVFAAEQERGIDGRPVMFPGWYRVKEYFENQF-DVEQERALMQETGA-SNDLAMSYLLQPVEDLLSRNYSAVGILEKWETSMTLFNKALKVPSFNWQTASRNLGRKNVDKRLHDEEAH-ALRAAWDDPVLAKTLWLDIFLYDHAVAVHNKQVEEHGIV 231          
BLAST of mRNA_C-linearis_contig99.17144.1 vs. uniprot
Match: A0A6H5JQM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM0_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 1.290e-32
Identity = 95/301 (31.56%), Postives = 144/301 (47.84%), Query Frame = 1
Query:   10 CWIFTHMNKSGRSTIKAILAKHMRHTRGSFRIYSQLLYGEGEDRLKTFLSQNATVVAGGYTEALRPFGGGDDCKWFTMFRHPISRVISACLYCKSEPSELLCGTAVLQANETDFHTFAEHWGNYGLRQYAMAFVDQDDLLSLEVKPGVCTPECPAWYRAKVYFEGLHADSTRQDKLLNESGLLEGDAAMANLFEPVTNLLSTRYAAVGILEEWEKSMVLFDHALELLKLNWSKSSARSRAKNKGRGIFSKEKDDL---------LRTAWNDERLKRSISLDLLLYDHAVGVFEQQMQGYGM 885
            CWIF HM+KSG S  + +  +  R       ++  + +  G+      ++ +  ++ GG  E+LR       CKW T+FRHPI+R++SA  +C   P + +C         T    FAE WGN+ +RQ+A+  V    +     +    T     WY  K Y              L   G+ E D  + ++ EPV  LLST+YAAVGI +E E +MVLF  AL +  L+WS S A         GI  + K D           R A  + R+  ++ LD+ LY+HA+ VF+ Q+  +G+
Sbjct:  273 CWIFMHMDKSGASGARRVATERWRKDE---LVFDTVQWRRGDGFAADVMASHWKLLHGGCVESLRNHKERS-CKWLTIFRHPIARLLSAYHHCLEAPKDPVCPPT----ESTGLVVFAELWGNFAMRQFALESVSPSAVKEWAAQRQARTGTS-MWYLVKEY--------------LARGGIAE-DEVLESMLEPVKGLLSTQYAAVGIAQELETTMVLFSKALSMEGLDWSSSWATL-------GINEEVKQDSEYDIAESEPFRQALENPRIVSALRLDMSLYEHAMHVFKDQVAQFGI 542          
BLAST of mRNA_C-linearis_contig99.17144.1 vs. uniprot
Match: D8LU75_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU75_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 5.180e-31
Identity = 92/295 (31.19%), Postives = 140/295 (47.46%), Query Frame = 1
Query:   28 MNKSGRSTIKAILAKHMRHTRGSFRIYSQLLYGEGEDRLKTFLSQNATVVAGGYTEALRPFGGGDDCKWFTMFRHPISRVISACLYCKSEPSELLCGTAVLQANETDFHTFAEHWGNYGLRQYAMAFVDQDDLLSLEVKPGVCTPECPAWYRAKVYFEGLHADSTRQDKLLNESGLLEGDAAMANLFEPVTNLLSTRYAAVGILEEWEKSMVLFDHALELLKLNWSKSSARSRAKNKGRGIFSKEKDDL---------LRTAWNDERLKRSISLDLLLYDHAVGVFEQQMQGYGM 885
            M+KSG S  + +  +  R       ++  + +  G+      ++    ++ GG  E+LR   G   CKW T+FRHPI+R++SA  +C   P + +C         T    FAE WGN+ +RQ+A+A V    +     +    T     WY  K Y              L   G+ E D  + +  EPV  LLST+YAAVGI +E + +MVLF  AL +  L+WS S A         GI  ++K D           R A  + R+  ++ LD+ LY+HAV VF+ Q+  +G+
Sbjct:    1 MDKSGASGARRVATEQWRKDE---LVFDTVQWRRGDGFAADVMASRWKLLHGGCVESLRNHKGRS-CKWITIFRHPIARLLSAYDHCLGAPKDPVCPPT----ESTGLAAFAELWGNFAMRQFALAAVSPSAVKEWAAQRQARTGTS-MWYLVKEY--------------LARGGIAE-DEVLGSKLEPVKGLLSTQYAAVGIAQELKTTMVLFSKALSMEGLDWSSSWATL-------GINEEDKQDSEYDITESEPFRQALENPRIVSALRLDMSLYEHAVHVFKDQVAQFGI 264          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig99.17144.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D7FS84_ECTSI3.170e-7342.24Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JY77_9PHAE3.590e-7039.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQY7_9PHAE3.740e-7040.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNJ0_9PHAE8.140e-6137.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWQ3_ECTSI1.050e-5537.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G716_ECTSI2.080e-5536.66Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G715_ECTSI1.860e-5136.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L061_9PHAE1.420e-5042.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQM0_9PHAE1.290e-3231.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LU75_ECTSI5.180e-3131.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig99contigC-linearis_contig99:97968..99443 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score180.3
Seed ortholog evalue1.3e-42
Seed eggNOG ortholog2880.D7FWQ3
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Sulfotransferase family
EggNOG OGs2CYGC@1,2S47N@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size894
Cds size867
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig99.17144.1prot_C-linearis_contig99.17144.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig99 97968..99416 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930846.3016992-CDS-C-linearis_contig99:97967..984691622930846.3016992-CDS-C-linearis_contig99:97967..98469Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 97968..98469 -
1690881279.7348065-CDS-C-linearis_contig99:97967..984691690881279.7348065-CDS-C-linearis_contig99:97967..98469Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 97968..98469 -
1622930846.3193212-CDS-C-linearis_contig99:98709..988501622930846.3193212-CDS-C-linearis_contig99:98709..98850Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 98710..98850 -
1690881279.74842-CDS-C-linearis_contig99:98709..988501690881279.74842-CDS-C-linearis_contig99:98709..98850Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 98710..98850 -
1622930846.3357122-CDS-C-linearis_contig99:99192..994161622930846.3357122-CDS-C-linearis_contig99:99192..99416Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 99193..99416 -
1690881279.759601-CDS-C-linearis_contig99:99192..994161690881279.759601-CDS-C-linearis_contig99:99192..99416Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 99193..99416 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930846.3553736-UTR-C-linearis_contig99:99416..994431622930846.3553736-UTR-C-linearis_contig99:99416..99443Chordaria linearis ClinC8C monoicousUTRC-linearis_contig99 99417..99443 -
1690881279.7690325-UTR-C-linearis_contig99:99416..994431690881279.7690325-UTR-C-linearis_contig99:99416..99443Chordaria linearis ClinC8C monoicousUTRC-linearis_contig99 99417..99443 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig99.17144.1

>prot_C-linearis_contig99.17144.1 ID=prot_C-linearis_contig99.17144.1|Name=mRNA_C-linearis_contig99.17144.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=289bp
MNKSGRSTIKAILAKHMRHTRGSFRIYSQLLYGEGEDRLKTFLSQNATVV
AGGYTEALRPFGGGDDCKWFTMFRHPISRVISACLYCKSEPSELLCGTAV
LQANETDFHTFAEHWGNYGLRQYAMAFVDQDDLLSLEVKPGVCTPECPAW
YRAKVYFEGLHADSTRQDKLLNESGLLEGDAAMANLFEPVTNLLSTRYAA
VGILEEWEKSMVLFDHALELLKLNWSKSSARSRAKNKGRGIFSKEKDDLL
RTAWNDERLKRSISLDLLLYDHAVGVFEQQMQGYGMME*
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mRNA from alignment at C-linearis_contig99:97968..99443-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig99.17144.1 ID=mRNA_C-linearis_contig99.17144.1|Name=mRNA_C-linearis_contig99.17144.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1476bp|location=Sequence derived from alignment at C-linearis_contig99:97968..99443- (Chordaria linearis ClinC8C monoicous)
CCGAAGGGGTGTTGGATATTTACCCACATGAATAAGTCGGGGAGGTCAAC GATCAAGGCGATACTTGCGAAGCACATGAGGCACACCCGGGGTTCGTTCA GGATCTACTCCCAGCTCCTGTACGGCGAGGGGGAGGACAGACTGAAAACG TTTCTCAGCCAGAACGCTACCGTGGTTGCTGGTGGATATACCGAAGCCCT CCGCCCTTTCGGGGGGGGAGATGATTGCAAGTGGTTCACCATGTTCCGGC AGTGAGTGGTGGTGTGTTTTGTTTTCCAGGCGTTCGTGTAGGAGAGGCAA CTAGCCGGCGAGCGGCAGAGCATGGAAGTAGGCCACTTTCGAGGCATTTT GGGCATATCGAACCGATCGGTTATCACCATTCACCTTTCTTTTCCCTTTT GTCTAGCCTTTCGTCGGCAAGTAAAGCAGCGCCGCACGAGCATTGACTGC TCTTTATTTTTGCGCGTGGTCCCTGGCTTATGCGAATTACGTACGGCTTT CTTTAGCTCTCAGATTATCATGTCATGTCATGCACACACCTTCTTCGCGT GTGTCGTTCATTCCGTGCTGTGCTCTCTCCCGTTTGCTGGCAGTCCCATA TCGCGGGTCATCAGCGCTTGCTTGTACTGCAAATCCGAGCCAAGCGAGTT GCTCTGCGGGACGGCTGTTCTCCAGGCGAACGAGACGGATTTCCATACTT TCGCCGAGCACTGGGGAAACTACGGACTGCGCCAGTGAGTCGTTGGCGAC AGCAGTTGGCGGCAATTTTGGTCTATTGTACAACAGGCATTGTGTCCCTT CGTTGTCTTAACGCTGTTCCGGAGGGTTCATGTAGGCCAGGTGTGGCTGT TGTTCTTGTTTTTGTTCGTCTTGTTGCTTTGCCGTTGTTTCCCGTCTGTT GCTTTGGACGCAAATCTAGAATCTGTGTTTTCGCGAAACATGAAACATGA AACATGAAACATGAAACATGACAGGTACGCAATGGCGTTTGTCGACCAAG ACGATCTCCTCTCATTGGAGGTAAAACCAGGGGTGTGTACTCCAGAGTGC CCTGCGTGGTATCGAGCGAAAGTGTACTTCGAAGGCCTGCACGCGGACAG CACAAGGCAAGACAAACTCCTCAATGAGTCCGGCCTGTTGGAGGGAGATG CTGCCATGGCAAACCTTTTCGAGCCTGTGACAAACCTGCTCAGCACGAGA TACGCAGCGGTTGGGATACTGGAGGAGTGGGAGAAGAGCATGGTCTTGTT CGATCACGCCTTGGAGCTGCTCAAGTTGAATTGGTCGAAATCATCCGCTC GCAGCCGCGCCAAGAACAAGGGAAGAGGAATATTCAGCAAGGAAAAAGAC GACTTGCTGCGGACGGCGTGGAACGACGAGAGGTTGAAAAGGTCAATTTC ATTGGATCTCCTCTTGTATGATCATGCCGTCGGGGTTTTCGAGCAGCAGA TGCAGGGCTACGGTATGATGGAGTAG
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Coding sequence (CDS) from alignment at C-linearis_contig99:97968..99443-

>mRNA_C-linearis_contig99.17144.1 ID=mRNA_C-linearis_contig99.17144.1|Name=mRNA_C-linearis_contig99.17144.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1734bp|location=Sequence derived from alignment at C-linearis_contig99:97968..99443- (Chordaria linearis ClinC8C monoicous)
ATGAATAAGTCGGGGAGGTCAACGATCAAGGCGATACTTGCGAAGCACAT
GAGGCACACCCGGGGTTCGTTCAGGATCTACTCCCAGCTCCTGTACGGCG
AGGGGGAGGACAGACTGAAAACGTTTCTCAGCCAGAACGCTACCGTGGTT
GCTGGTGGATATACCGAAGCCCTCCGCCCTTTCGGGGGGGGAGATGATTG
CAAGTGGTTCACCATGTTCCGGCAATGAATAAGTCGGGGAGGTCAACGAT
CAAGGCGATACTTGCGAAGCACATGAGGCACACCCGGGGTTCGTTCAGGA
TCTACTCCCAGCTCCTGTACGGCGAGGGGGAGGACAGACTGAAAACGTTT
CTCAGCCAGAACGCTACCGTGGTTGCTGGTGGATATACCGAAGCCCTCCG
CCCTTTCGGGGGGGGAGATGATTGCAAGTGGTTCACCATGTTCCGGCATC
CCATATCGCGGGTCATCAGCGCTTGCTTGTACTGCAAATCCGAGCCAAGC
GAGTTGCTCTGCGGGACGGCTGTTCTCCAGGCGAACGAGACGGATTTCCA
TACTTTCGCCGAGCACTGGGGAAACTACGGACTGCGCCATCCCATATCGC
GGGTCATCAGCGCTTGCTTGTACTGCAAATCCGAGCCAAGCGAGTTGCTC
TGCGGGACGGCTGTTCTCCAGGCGAACGAGACGGATTTCCATACTTTCGC
CGAGCACTGGGGAAACTACGGACTGCGCCAGTACGCAATGGCGTTTGTCG
ACCAAGACGATCTCCTCTCATTGGAGGTAAAACCAGGGGTGTGTACTCCA
GAGTGCCCTGCGTGGTATCGAGCGAAAGTGTACTTCGAAGGCCTGCACGC
GGACAGCACAAGGCAAGACAAACTCCTCAATGAGTCCGGCCTGTTGGAGG
GAGATGCTGCCATGGCAAACCTTTTCGAGCCTGTGACAAACCTGCTCAGC
ACGAGATACGCAGCGGTTGGGATACTGGAGGAGTGGGAGAAGAGCATGGT
CTTGTTCGATCACGCCTTGGAGCTGCTCAAGTTGAATTGGTCGAAATCAT
CCGCTCGCAGCCGCGCCAAGAACAAGGGAAGAGGAATATTCAGCAAGGAA
AAAGACGACTTGCTGCGGACGGCGTGGAACGACGAGAGGTTGAAAAGGTC
AATTTCATTGGATCTCCTCTTGTATGATCATGCCGTCGGGGTTTTCGAGC
AGCAGATGCAGGGCTACGGTATGATGGAGTAGGTACGCAATGGCGTTTGT
CGACCAAGACGATCTCCTCTCATTGGAGGTAAAACCAGGGGTGTGTACTC
CAGAGTGCCCTGCGTGGTATCGAGCGAAAGTGTACTTCGAAGGCCTGCAC
GCGGACAGCACAAGGCAAGACAAACTCCTCAATGAGTCCGGCCTGTTGGA
GGGAGATGCTGCCATGGCAAACCTTTTCGAGCCTGTGACAAACCTGCTCA
GCACGAGATACGCAGCGGTTGGGATACTGGAGGAGTGGGAGAAGAGCATG
GTCTTGTTCGATCACGCCTTGGAGCTGCTCAAGTTGAATTGGTCGAAATC
ATCCGCTCGCAGCCGCGCCAAGAACAAGGGAAGAGGAATATTCAGCAAGG
AAAAAGACGACTTGCTGCGGACGGCGTGGAACGACGAGAGGTTGAAAAGG
TCAATTTCATTGGATCTCCTCTTGTATGATCATGCCGTCGGGGTTTTCGA
GCAGCAGATGCAGGGCTACGGTATGATGGAGTAG
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