mRNA_C-linearis_contig99.17198.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig99.17198.1
Unique NamemRNA_C-linearis_contig99.17198.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig99.17198.1 vs. uniprot
Match: A0A6H5KPV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPV6_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 4.190e-13
Identity = 40/60 (66.67%), Postives = 43/60 (71.67%), Query Frame = 1 
Query:    1 SAARQARHDILSGTPIIGAGSDMGNVAGVFEAIARYCPLEGSHLQGLSIYGLATSTASVR 180
            SAARQARHDIL GTPI GAG DMGNVAGVFEAIAR CP +GS L   S++      A  R
Sbjct:  405 SAARQARHDILHGTPITGAGCDMGNVAGVFEAIARACPRQGSPLWPDSVFDQQARVARTR 464
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BLAST of mRNA_C-linearis_contig99.17198.1 vs. uniprot
Match: A0A6H5K6P6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6P6_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 1.010e-8
Identity = 31/57 (54.39%), Postives = 37/57 (64.91%), Query Frame = 3 
Query:  147 LWPGNVHGQRTLVVRTRRDFGLDWRYANNCNIDDHH-RVLQCLTGSVYQATTVTTIP 314
            LWP +V  Q+  V RTRRDFGLDWRYANNC I +H  R +     +  +A TV TIP
Sbjct:  183 LWPDSVFDQQARVARTRRDFGLDWRYANNCTIGNHSAREVTPDQSARLRAATVITIP 239
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig99.17198.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KPV6_9PHAE4.190e-1366.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6P6_9PHAE1.010e-854.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig99contigC-linearis_contig99:617632..617985 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size355
Cds size354
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930846.2491047-CDS-C-linearis_contig99:617631..6179851622930846.2491047-CDS-C-linearis_contig99:617631..617985Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 617632..617985 +
1690881279.724326-CDS-C-linearis_contig99:617631..6179851690881279.724326-CDS-C-linearis_contig99:617631..617985Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 617632..617985 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig99.17198.1prot_C-linearis_contig99.17198.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig99 617632..617985 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig99.17198.1

>prot_C-linearis_contig99.17198.1 ID=prot_C-linearis_contig99.17198.1|Name=mRNA_C-linearis_contig99.17198.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=118bp
SAARQARHDILSGTPIIGAGSDMGNVAGVFEAIARYCPLEGSHLQGLSIY
GLATSTASVRLLCALAETSALTGGTPTTATSTTTTACSSVSPDQSTRLRP
SPPFHHSQWCIDNLPRQR
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mRNA from alignment at C-linearis_contig99:617632..617985+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig99.17198.1 ID=mRNA_C-linearis_contig99.17198.1|Name=mRNA_C-linearis_contig99.17198.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=354bp|location=Sequence derived from alignment at C-linearis_contig99:617632..617985+ (Chordaria linearis ClinC8C monoicous)
TCTGCTGCTCGACAGGCCCGTCACGACATCCTGTCCGGTACCCCTATCAT
CGGAGCCGGATCTGACATGGGTAACGTCGCCGGCGTGTTCGAGGCCATTG
CGAGATATTGTCCACTTGAAGGTTCACATCTACAGGGTCTATCTATCTAT
GGCCTGGCAACGTCCACGGCCAGCGTACGCTTGTTGTGCGCACTCGCCGA
GACTTCGGCCTTGACTGGAGGTACGCCAACAACTGCAACATCGACGACCA
CCACCGCGTGCTCCAGTGTCTCACCGGATCAGTCTACCAGGCTACGACCG
TCACCACCATTCCACCATTCCCAATGGTGCATCGACAACCTTCCACGACA
GCGT
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Coding sequence (CDS) from alignment at C-linearis_contig99:617632..617985+

>mRNA_C-linearis_contig99.17198.1 ID=mRNA_C-linearis_contig99.17198.1|Name=mRNA_C-linearis_contig99.17198.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at C-linearis_contig99:617632..617985+ (Chordaria linearis ClinC8C monoicous)
TCTGCTGCTCGACAGGCCCGTCACGACATCCTGTCCGGTACCCCTATCAT
CGGAGCCGGATCTGACATGGGTAACGTCGCCGGCGTGTTCGAGGCCATTG
CGAGATATTGTCCACTTGAAGGTTCACATCTACAGGGTCTATCTATCTAT
GGCCTGGCAACGTCCACGGCCAGCGTACGCTTGTTGTGCGCACTCGCCGA
GACTTCGGCCTTGACTGGAGGTACGCCAACAACTGCAACATCGACGACCA
CCACCGCGTGCTCCAGTGTCTCACCGGATCAGTCTACCAGGCTACGACCG
TCACCACCATTCCACCATTCCCAATGGTGCATCGACAACCTTCCACGACA
GCGTTCTGCTGCTCGACAGGCCCGTCACGACATCCTGTCCGGTACCCCTA
TCATCGGAGCCGGATCTGACATGGGTAACGTCGCCGGCGTGTTCGAGGCC
ATTGCGAGATATTGTCCACTTGAAGGTTCACATCTACAGGGTCTATCTAT
CTATGGCCTGGCAACGTCCACGGCCAGCGTACGCTTGTTGTGCGCACTCG
CCGAGACTTCGGCCTTGACTGGAGGTACGCCAACAACTGCAACATCGACG
ACCACCACCGCGTGCTCCAGTGTCTCACCGGATCAGTCTACCAGGCTACG
ACCGTCACCACCATTCCACCATTCCCAATGGTGCATCGACAACCTTCCAC
GACAGCGT
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