mRNA_C-linearis_contig99.17157.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig99.17157.1
Unique NamemRNA_C-linearis_contig99.17157.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig99.17157.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig99contigC-linearis_contig99:237078..237530 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size453
Cds size366
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig99.17157.1prot_C-linearis_contig99.17157.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig99 237102..237467 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930846.0774171-UTR-C-linearis_contig99:237077..2371011622930846.0774171-UTR-C-linearis_contig99:237077..237101Chordaria linearis ClinC8C monoicousUTRC-linearis_contig99 237078..237101 +
1690881279.6663334-UTR-C-linearis_contig99:237077..2371011690881279.6663334-UTR-C-linearis_contig99:237077..237101Chordaria linearis ClinC8C monoicousUTRC-linearis_contig99 237078..237101 +
1622930846.1310835-UTR-C-linearis_contig99:237467..2375301622930846.1310835-UTR-C-linearis_contig99:237467..237530Chordaria linearis ClinC8C monoicousUTRC-linearis_contig99 237468..237530 +
1690881279.697829-UTR-C-linearis_contig99:237467..2375301690881279.697829-UTR-C-linearis_contig99:237467..237530Chordaria linearis ClinC8C monoicousUTRC-linearis_contig99 237468..237530 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930846.0991678-CDS-C-linearis_contig99:237101..2374671622930846.0991678-CDS-C-linearis_contig99:237101..237467Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 237102..237467 +
1690881279.6804047-CDS-C-linearis_contig99:237101..2374671690881279.6804047-CDS-C-linearis_contig99:237101..237467Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 237102..237467 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig99.17157.1

>prot_C-linearis_contig99.17157.1 ID=prot_C-linearis_contig99.17157.1|Name=mRNA_C-linearis_contig99.17157.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=122bp
MPSASRLMPVPWKWQVLNSDKQPPVAKKLKYKSQRLPCLEVFHTPFASIL
CACVCVPISVVCHYKQAELLAMKEMPTCRVVTLLAKQNLRTCSYCRFVGF
VLAVTGEGSSRNRSGPHHTAL*
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mRNA from alignment at C-linearis_contig99:237078..237530+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig99.17157.1 ID=mRNA_C-linearis_contig99.17157.1|Name=mRNA_C-linearis_contig99.17157.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=453bp|location=Sequence derived from alignment at C-linearis_contig99:237078..237530+ (Chordaria linearis ClinC8C monoicous)
GGCAGTCAGTCAAATCATCAAATCATGCCGAGTGCCTCACGCCTCATGCC
AGTGCCGTGGAAGTGGCAAGTGTTGAACAGTGACAAACAACCTCCTGTCG
CGAAAAAATTGAAATACAAAAGCCAGCGTTTGCCTTGCCTTGAGGTTTTT
CATACTCCTTTTGCAAGTATCCTCTGTGCATGTGTATGTGTACCGATTTC
GGTAGTTTGTCACTACAAGCAAGCGGAATTGCTAGCCATGAAGGAAATGC
CCACGTGTCGTGTAGTCACCCTGCTCGCGAAGCAAAATCTACGGACATGT
TCGTACTGTAGATTCGTTGGTTTTGTTTTGGCGGTGACGGGGGAAGGGAG
TTCGAGGAACCGAAGCGGTCCTCATCATACAGCCCTTTAATGTATCTTCG
ACTGACCCTGCCGGCGGTAATTGGTGAAAATGCGATCTCGTTGCCATCTG
TCC
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Coding sequence (CDS) from alignment at C-linearis_contig99:237078..237530+

>mRNA_C-linearis_contig99.17157.1 ID=mRNA_C-linearis_contig99.17157.1|Name=mRNA_C-linearis_contig99.17157.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=732bp|location=Sequence derived from alignment at C-linearis_contig99:237078..237530+ (Chordaria linearis ClinC8C monoicous)
ATGCCGAGTGCCTCACGCCTCATGCCAGTGCCGTGGAAGTGGCAAGTGTT
GAACAGTGACAAACAACCTCCTGTCGCGAAAAAATTGAAATACAAAAGCC
AGCGTTTGCCTTGCCTTGAGGTTTTTCATACTCCTTTTGCAAGTATCCTC
TGTGCATGTGTATGTGTACCGATTTCGGTAGTTTGTCACTACAAGCAAGC
GGAATTGCTAGCCATGAAGGAAATGCCCACGTGTCGTGTAGTCACCCTGC
TCGCGAAGCAAAATCTACGGACATGTTCGTACTGTAGATTCGTTGGTTTT
GTTTTGGCGGTGACGGGGGAAGGGAGTTCGAGGAACCGAAGCGGTCCTCA
TCATACAGCCCTTTAAATGCCGAGTGCCTCACGCCTCATGCCAGTGCCGT
GGAAGTGGCAAGTGTTGAACAGTGACAAACAACCTCCTGTCGCGAAAAAA
TTGAAATACAAAAGCCAGCGTTTGCCTTGCCTTGAGGTTTTTCATACTCC
TTTTGCAAGTATCCTCTGTGCATGTGTATGTGTACCGATTTCGGTAGTTT
GTCACTACAAGCAAGCGGAATTGCTAGCCATGAAGGAAATGCCCACGTGT
CGTGTAGTCACCCTGCTCGCGAAGCAAAATCTACGGACATGTTCGTACTG
TAGATTCGTTGGTTTTGTTTTGGCGGTGACGGGGGAAGGGAGTTCGAGGA
ACCGAAGCGGTCCTCATCATACAGCCCTTTAA
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