mRNA_C-linearis_contig99.17145.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig99.17145.1
Unique NamemRNA_C-linearis_contig99.17145.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig99.17145.1 vs. uniprot
Match: A0A6H5JD89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD89_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 2.620e-33
Identity = 63/106 (59.43%), Postives = 81/106 (76.42%), Query Frame = -2 
Query:    3 GSDLGELESSTVSEAVPLDELTPSAAGLASMQGVQVPSMPVSTSFERTKFDGMWMHFTNPDSRQSFVDFDAFALEWNKSVSAMEEGKSPVVPIFRKTAASLKSHWK 320
            G++   ++ +   EAVPL ELT SAA LA MQGVQVP MPV+++ E+ KF  MW+ F +P  RQ+ +DFD+FALEWNK+VS MEEGKS V+PIFRKTA  LK++WK
Sbjct:  402 GAENSGIDPAFADEAVPLPELTGSAARLAKMQGVQVPHMPVTSAAEKAKFGDMWLEFVDPAGRQTLLDFDSFALEWNKAVSLMEEGKSAVIPIFRKTAGHLKAYWK 507
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BLAST of mRNA_C-linearis_contig99.17145.1 vs. uniprot
Match: A0A6H5JET4_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JET4_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 9.210e-33
Identity = 63/106 (59.43%), Postives = 81/106 (76.42%), Query Frame = -2 
Query:    3 GSDLGELESSTVSEAVPLDELTPSAAGLASMQGVQVPSMPVSTSFERTKFDGMWMHFTNPDSRQSFVDFDAFALEWNKSVSAMEEGKSPVVPIFRKTAASLKSHWK 320
            G++   ++ +   EAVPL ELT SAA LA MQGVQVP MPV+++ E+ KF  MW+ F +P  RQ+ +DFD+FALEWNK+VS MEEGKS V+PIFRKTA  LK++WK
Sbjct:  975 GAENSGIDPAFADEAVPLPELTGSAARLAKMQGVQVPHMPVTSAAEKAKFGDMWLEFVDPAGRQTLLDFDSFALEWNKAVSLMEEGKSAVIPIFRKTAGHLKAYWK 1080
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BLAST of mRNA_C-linearis_contig99.17145.1 vs. uniprot
Match: A0A6H5KEU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEU8_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 1.190e-5
Identity = 28/50 (56.00%), Postives = 38/50 (76.00%), Query Frame = -2 
Query:  171 GSDLGELESSTVSEAVPLDELTPSAAGLASMQGVQVPSMPVSTSFERTKF 320
            G++   ++ ++V EAVPL ELT SAA LA MQGVQVP MPV+++ E +KF
Sbjct:  577 GAENSSMDPASVEEAVPLPELTGSAARLAKMQGVQVPHMPVTSAAENSKF 626
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig99.17145.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JD89_9PHAE2.620e-3359.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JET4_9PHAE9.210e-3359.433'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5KEU8_9PHAE1.190e-556.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig99contigC-linearis_contig99:116146..116482 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size338
Cds size336
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930845.746225-CDS-C-linearis_contig99:116145..1164811622930845.746225-CDS-C-linearis_contig99:116145..116481Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 116146..116481 +
1690881279.5395906-CDS-C-linearis_contig99:116145..1164811690881279.5395906-CDS-C-linearis_contig99:116145..116481Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 116146..116481 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig99.17145.1prot_C-linearis_contig99.17145.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig99 116146..116481 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig99.17145.1

>prot_C-linearis_contig99.17145.1 ID=prot_C-linearis_contig99.17145.1|Name=mRNA_C-linearis_contig99.17145.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=112bp
FFQCDFKDAAVFLKMGTTGLFPSSMADTLLFHSSAKASKSTKDCRESGFV
KCIHMPSNLVRSKLVLTGMEGTCTPCMLARPAADGVSSSSGTASLTVLLS
SSPKSLPSGDSD
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mRNA from alignment at C-linearis_contig99:116146..116482+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig99.17145.1 ID=mRNA_C-linearis_contig99.17145.1|Name=mRNA_C-linearis_contig99.17145.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=337bp|location=Sequence derived from alignment at C-linearis_contig99:116146..116482+ (Chordaria linearis ClinC8C monoicous)
TTTTTCCAGTGCGACTTCAAGGATGCGGCCGTCTTCCTGAAGATGGGGAC
CACCGGGCTCTTCCCCTCTTCCATGGCAGATACGCTCTTGTTCCACTCCA
GCGCAAAGGCGTCGAAGTCGACAAAAGACTGCCGCGAATCCGGATTCGTG
AAATGCATCCACATGCCATCAAACTTGGTGCGTTCAAAGCTAGTGCTGAC
GGGCATGGAAGGCACCTGCACTCCCTGCATGCTTGCGAGGCCAGCCGCCG
ACGGTGTCAGCTCGTCAAGCGGCACGGCCTCGCTGACTGTACTGCTCTCA
AGCTCGCCCAAATCGCTTCCCTCCGGCGATTCTGACG
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Coding sequence (CDS) from alignment at C-linearis_contig99:116146..116482+

>mRNA_C-linearis_contig99.17145.1 ID=mRNA_C-linearis_contig99.17145.1|Name=mRNA_C-linearis_contig99.17145.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at C-linearis_contig99:116146..116482+ (Chordaria linearis ClinC8C monoicous)
TTTTTCCAGTGCGACTTCAAGGATGCGGCCGTCTTCCTGAAGATGGGGAC
CACCGGGCTCTTCCCCTCTTCCATGGCAGATACGCTCTTGTTCCACTCCA
GCGCAAAGGCGTCGAAGTCGACAAAAGACTGCCGCGAATCCGGATTCGTG
AAATGCATCCACATGCCATCAAACTTGGTGCGTTCAAAGCTAGTGCTGAC
GGGCATGGAAGGCACCTGCACTCCCTGCATGCTTGCGAGGCCAGCCGCCG
ACGGTGTCAGCTCGTCAAGCGGCACGGCCTCGCTGACTGTACTGCTCTCA
AGCTCGCCCAAATCGCTTCCCTCCGGCGATTCTGACTTTTTCCAGTGCGA
CTTCAAGGATGCGGCCGTCTTCCTGAAGATGGGGACCACCGGGCTCTTCC
CCTCTTCCATGGCAGATACGCTCTTGTTCCACTCCAGCGCAAAGGCGTCG
AAGTCGACAAAAGACTGCCGCGAATCCGGATTCGTGAAATGCATCCACAT
GCCATCAAACTTGGTGCGTTCAAAGCTAGTGCTGACGGGCATGGAAGGCA
CCTGCACTCCCTGCATGCTTGCGAGGCCAGCCGCCGACGGTGTCAGCTCG
TCAAGCGGCACGGCCTCGCTGACTGTACTGCTCTCAAGCTCGCCCAAATC
GCTTCCCTCCGGCGATTCTGAC
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