mRNA_C-linearis_contig99.17187.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig99.17187.1
Unique NamemRNA_C-linearis_contig99.17187.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig99.17187.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig99contigC-linearis_contig99:444340..444776 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size299
Cds size201
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig99.17187.1prot_C-linearis_contig99.17187.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig99 444436..444776 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930845.6011-UTR-C-linearis_contig99:444339..4444351622930845.6011-UTR-C-linearis_contig99:444339..444435Chordaria linearis ClinC8C monoicousUTRC-linearis_contig99 444340..444435 -
1690881279.474663-UTR-C-linearis_contig99:444339..4444351690881279.474663-UTR-C-linearis_contig99:444339..444435Chordaria linearis ClinC8C monoicousUTRC-linearis_contig99 444340..444435 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930845.6192267-CDS-C-linearis_contig99:444435..4445391622930845.6192267-CDS-C-linearis_contig99:444435..444539Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 444436..444539 -
1690881279.489138-CDS-C-linearis_contig99:444435..4445391690881279.489138-CDS-C-linearis_contig99:444435..444539Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 444436..444539 -
1622930845.6335802-CDS-C-linearis_contig99:444679..4447761622930845.6335802-CDS-C-linearis_contig99:444679..444776Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 444680..444776 -
1690881279.5008042-CDS-C-linearis_contig99:444679..4447761690881279.5008042-CDS-C-linearis_contig99:444679..444776Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 444680..444776 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig99.17187.1

>prot_C-linearis_contig99.17187.1 ID=prot_C-linearis_contig99.17187.1|Name=mRNA_C-linearis_contig99.17187.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=67bp
DGKGALRHRQGRERLGLRRPPPGEARPPHPRGGLRHRLRGFETPITHHPS
SRLRGFETPIQPQPLA*
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mRNA from alignment at C-linearis_contig99:444340..444776-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig99.17187.1 ID=mRNA_C-linearis_contig99.17187.1|Name=mRNA_C-linearis_contig99.17187.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=437bp|location=Sequence derived from alignment at C-linearis_contig99:444340..444776- (Chordaria linearis ClinC8C monoicous)
GATGGAAAAGGCGCCTTACGTCATCGCCAAGGTCGAGAACGCTTGGGCCT
GCGTAGACCTCCTCCGGGAGAAGCACGGCCGCCCCACCCCCGAGGAGGTG
AAGTTCGACGTCGACGTTTATACTGCCACCGTCTCCCTCAAGGCAGGCAC
CCTGGAAAGCGAAGGCAACGCAGTGAGTTTCGCGAGCGAACCCAACCCTG
ACCCCTTAACACAGCTTTCGCCTCTCACTGTCGGCAGGGTTAAGACACCG
TCTGAGGGGGTTCGAGACACCCATCACCCATCACCCATCAAGTCGTCTGA
GGGGGTTCGAGACACCCATCCAACCCCAACCCCTAGCCTAGCTGCGTGCG
CGCGTGTGCAGCTACATGGAGCTGGGAGAGCGTGGAGATCGGAAGCTTTA
TTAGCTGTGATGGAGCTTGCGGGCTAGCTGATTGGAC
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Coding sequence (CDS) from alignment at C-linearis_contig99:444340..444776-

>mRNA_C-linearis_contig99.17187.1 ID=mRNA_C-linearis_contig99.17187.1|Name=mRNA_C-linearis_contig99.17187.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at C-linearis_contig99:444340..444776- (Chordaria linearis ClinC8C monoicous)
GATGGAAAAGGCGCCTTACGTCATCGCCAAGGTCGAGAACGCTTGGGCCT
GCGTAGACCTCCTCCGGGAGAAGCACGGCCGCCCCACCCCCGAGGAGGAT
GGAAAAGGCGCCTTACGTCATCGCCAAGGTCGAGAACGCTTGGGCCTGCG
TAGACCTCCTCCGGGAGAAGCACGGCCGCCCCACCCCCGAGGAGGGTTAA
GACACCGTCTGAGGGGGTTCGAGACACCCATCACCCATCACCCATCAAGT
CGTCTGAGGGGGTTCGAGACACCCATCCAACCCCAACCCCTAGCCTAGGG
TTAAGACACCGTCTGAGGGGGTTCGAGACACCCATCACCCATCACCCATC
AAGTCGTCTGAGGGGGTTCGAGACACCCATCCAACCCCAACCCCTAGCCT
AG
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