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Homology
BLAST of mRNA_C-linearis_contig98.17134.1 vs. uniprot
Match: D8LJU2_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJU2_ECTSI) HSP 1 Score: 103 bits (257), Expect = 3.150e-22 Identity = 72/185 (38.92%), Postives = 82/185 (44.32%), Query Frame = 1
Query: 70 MVYQRA----------GGRERCVGCGFGKGQFQVQY-DDDRDGSGRGYCSLDCYTSAKVTGRNLQTQQSRGRGGDXXXXXXXXXXXXXXXXXXXXXXXXXXXPQPWPTGFLVDAPPSPKPWRGRTL----SQDNMSWRTV-----STGNLSVA-----DESFSQSSVADWHGADSEDGETSIGSG 549
MVYQR G RERC GCG+G GQFQV+Y +D DG GRGYCSLDCYTSAK G L+DAPP PKPWR + Q ++ W + STG D S +SSVADW DSEDGETS+GSG
Sbjct: 1 MVYQRTASPAQFSSGRGSRERCRGCGYGLGQFQVEYASNDDDGLGRGYCSLDCYTSAK--------------------------------------------------GLLLDAPPEPKPWRRTAIMSRRQQRDLGWTSTVLPGSSTGTFGAGGAAGDDTSSQESSVADWQTVDSEDGETSVGSG 135
BLAST of mRNA_C-linearis_contig98.17134.1 vs. uniprot
Match: A0A6H5KT65_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT65_9PHAE) HSP 1 Score: 87.4 bits (215), Expect = 1.140e-17 Identity = 48/74 (64.86%), Postives = 51/74 (68.92%), Query Frame = 1
Query: 70 MVYQRA----------GGRERCVGCGFGKGQFQVQY-DDDRDGSGRGYCSLDCYTSAKVTGRNLQTQQSRGRGG 258
MVYQR G RERC GCG+G GQFQV+Y +D DG GRGYCSLDCYTSAKVTGR LQ Q R RGG
Sbjct: 1 MVYQRTASPAQSSSGRGSRERCRGCGYGLGQFQVEYASNDDDGLGRGYCSLDCYTSAKVTGRALQ-HQPRARGG 73
BLAST of mRNA_C-linearis_contig98.17134.1 vs. uniprot
Match: A0A6H5KTY8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTY8_9PHAE) HSP 1 Score: 67.8 bits (164), Expect = 1.290e-8 Identity = 40/83 (48.19%), Postives = 48/83 (57.83%), Query Frame = 1
Query: 343 PQP--WPTGFLVDAPPSPKPWRGRTL----SQDNMSWRTV-----STGNLSVA----DESFSQSSVADWHGADSEDGETSIGS 546
PQP WPTG L+DAPP PKPWR + Q ++ W + STG + D S +SSVADW DSEDGETS+GS
Sbjct: 11 PQPLSWPTGLLLDAPPEPKPWRRTAIMSRRQQRDLGWTSAVLSGNSTGTFGASAAGDDTSSQESSVADWQTVDSEDGETSVGS 93
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-23_000130.1 |
| Exons | 2 |
| Model size | 1288 |
| Cds size | 1218 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622930842.9817636-CDS-C-linearis_contig98:477171..478248 | 1622930842.9817636-CDS-C-linearis_contig98:477171..478248 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig98 477172..478248 - |
| 1690881278.0804918-CDS-C-linearis_contig98:477171..478248 | 1690881278.0804918-CDS-C-linearis_contig98:477171..478248 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig98 477172..478248 - |
| 1622930842.9972892-CDS-C-linearis_contig98:481040..481181 | 1622930842.9972892-CDS-C-linearis_contig98:481040..481181 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig98 481041..481181 - |
| 1690881278.093506-CDS-C-linearis_contig98:481040..481181 | 1690881278.093506-CDS-C-linearis_contig98:481040..481181 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig98 481041..481181 - |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622930843.009831-UTR-C-linearis_contig98:481181..481250 | 1622930843.009831-UTR-C-linearis_contig98:481181..481250 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig98 481182..481250 - |
| 1690881278.1033096-UTR-C-linearis_contig98:481181..481250 | 1690881278.1033096-UTR-C-linearis_contig98:481181..481250 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig98 481182..481250 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig98.17134.1 >prot_C-linearis_contig98.17134.1 ID=prot_C-linearis_contig98.17134.1|Name=mRNA_C-linearis_contig98.17134.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=406bp
MVYQRAGGRERCVGCGFGKGQFQVQYDDDRDGSGRGYCSLDCYTSAKVTG
RNLQTQQSRGRGGDGGGMLYNQQHRRGAGGGGGARGHGGGGPQPWPTGFL
VDAPPSPKPWRGRTLSQDNMSWRTVSTGNLSVADESFSQSSVADWHGADS
EDGETSIGSGNGSGSGNGSGSGSAGDAIVRGGVGVAAADGLPSQQQQQQG
PPRNNNDNLGNLGNHRYDGDGSGSGGSAARRNGGSGGTIAPPLGGGNRNN
GEAVHHGGGQMDHRLEKGDSSGNGDGDSGSMGFAGAGQPAAGVAGATRGE
AATHRPPLVPFAPIPRLRAFPAQRRIHGTYGPGADGDSGGGGRKVPGRTV
AFAAPPAQASPPRRPPGVGRGGAVVDVLPLRPRPVAAAAGRQQPVEAAAA
AGVCGG back to topmRNA from alignment at C-linearis_contig98:477172..481250- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-linearis_contig98.17134.1 ID=mRNA_C-linearis_contig98.17134.1|Name=mRNA_C-linearis_contig98.17134.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4079bp|location=Sequence derived from alignment at C-linearis_contig98:477172..481250- (Chordaria linearis ClinC8C monoicous)
TACCGTTCCTAGATGCAAGGGGGTACGATGGAGCGTCCATAAAACAAGCG
AAGAAAAGAGGAGGGAAACATGGTTTACCAGCGAGCAGGCGGGAGAGAGA
GATGCGTGGGGTGCGGCTTCGGGAAGGGTCAGTTTCAGGTTCAATACGAT
GATGACCGTGACGGGTCAGGTCGTGGCTACTGCAGCCTCGACTGCTACAC
CTCCGCCAAGGTGAGGAAAAACTCAAGACTCTGGGGAGGGGGGACGACAC
GAGGGCCTCCTGGAGAGAGCCCCAGTCGGAGCTGTCGCCGGGTCACCAGA
TTTGTGGCGCGGATTTTTGATGGCTGGCGGAGAGCGAGTCTTTTGAAATC
ACCAAACAACACACACAGACACACACAGGCCACGATTGCAGAAGCCTTCT
TTTTTTCTTTTTTTTCGGAAATGAACAAAAATGGGCGCTCACACGTACAC
CAGAACGGGCGTTGAACTTTGGATGCTCGCGTGCGTCCCACTTTTGTCAG
CGGCTGACCGTCCTCGCTCGATTGATAGATTCCCCCGGGCCGTGAGTGCT
CGCTGCACACGGCCATGGGGCTGCGGTCGCCTACTGAGGGCCACACCTGA
TATCGGGCGCTTGATAGATTGTGGACTAAATTTACTTACATATTACCGAA
CAATATGTGCTCTGTCGTGTACACGGAGCATTGCGCATCCAGCCGAGCCG
TTTCTGTTTTTTTGTGGTGTTTGTTTTTGCCCCTTGGAGCCTTTTCCGCG
AAGAAGAGCCGACCTTTACCTTTTTTCGGTATTTCATGAAAAGTCTCATG
TTTTGACGTGTGTATGTACACGGAGGGAAGAGATTGCCGCACTCTTCTCG
CATTCAAATCAGAGGCGAAGTACCGCAGGAGGGGAGGGTGGGGGGCCTCA
GGGAGAGGAACCCTTCTGTGTGACCACGGGCTAGAGCTCCTATCCGGCAG
AAATGCTGTGAGCCCTGGTTATATGTGAAGATAAAAAAAAAGTAAATGTT
TTGAGGGACGGAGCGATTTTTTGTATACAGAGCACAGAGCACACACGCTT
TTGCTCTAGCGGCCGTGAGGAGCACGCGCCCCGGGCACCCAGAGCTCTTT
GCTGTCGTAGCTGGTGCCGTCGCTGGTCCAGCATCAACTCTGTTGCTTGG
TGGGCGCTCACCAGTTTTGTCCGTTGTCAAACGAAAGTGAAAAAAAAACG
TCACGAATGTAATTTCCCACCTCCCGCAGCTCTTTCTCTCCAGGAAGAGG
CAGGCGAACGTACGTCACGACATCGTTTCCTAGATCGGAGACGGATCCAT
CATTGATCATCGATCTTCTTGCCCCTTCCTTTTCTCTACATCACCCGCAT
GTAGCTCAAAAGCAGTACGTGGCCGATCGCAAACTACGACTTAACTGCTG
CTGCTGGTGTGTGTATTTTCTTCTCTTTTTTTTCTTTTTTTTATCTTCAC
ATCCTTCGTATAACCAGAGCTCACAGCATTTCTGCCGGATAGGAGCTGGG
AGCTCTAGCCCGTGGTCACACATCACACAGAAGGGTTCCTCTCCCTGAGG
CCCCCCACCCTCCCCTCCTGCGGTGCTTCGCCTTTGATTTGAATGCGAGG
AGAGCGCGGCAATCTCTTCCCTCTGTGTACACACGACTAGCGCTTTCCAC
AAACCAGGGACGCACTTGGGAAAAAAGTTCACGAAAAACCATAATAACGT
GGCTAGCAGAAAACCAGGTACGTATTCCTTATTTCTTACCAGGTACTGGT
ATTTGTTATTTGGCTTCGCCGTTCAAACAAGGCCAGCAGGCACCGCCCCA
TGTGTACTTTCGTTGTGAGGCAGCCTTTCTTCTTTTTTTCGTGCTGTTGA
AACCCAAGACGCCATGCGCACTAGCCTGGTTGTTTGTTGTTTCAGCGCGA
CATATGATGCAATCAATCGCCAGCCCATCCGAACGCACACACAGCAGGTG
GTCGTGCAGTCGTGGCCCATAATTTATTTCCTGTGGTGTCGCGATGTGGT
TTGGTGACTTGTGACGAACGCGGGCTTTGGTCTTTTTTGTTCAACTTTGT
TTTTTTCTGCTTTGGTGGGCCTGCCTGCCTTGCGCGGTCGCTCTGCGCAT
GCGTACAATGCCCTACATACATACATACACGCCCGCGGCGAACGACGCGC
TTGAACTAGCTTCCACTCAGCGAACGCGCTGCAACAGCTACTCTGTTGCT
GGTTCATATCGCGCACAGAGTCTCCACAAGACACCGCGTGACGGCTCAGC
TTGTTGTTGCTCTTGTTTTAATTAGTATTGTTGTTGTTGCCCTAAATTCA
AATCCGTATACGAAGTATATACTCCGAGTATATAATAGCGCGAGGGCGAC
CAAGACGGGCAGCACTTTGGCGCGCAATCTTGTGTCGGCCGGGTGTTTTA
AGTAACGTCTACTTTGGTGTGGCGCCCGCAGTCACAATCAAATAAAAAAT
AAAATATTACAGCTTGATTAGGTCAAAACCCAACCTCGTACGAAGACTCT
TTTCGAGAAGGCCGCCCCCCATGTTTTCTCTGGAACGACGTTTCGATCGC
ATCGTATCTATGATGCACAAAACACAAGGTACCAGTAGACTACATATAGG
TGCGACTTTCTTTCACAGAGCAAGCAAAACTGAAACTGGAAATTCGAAAT
TCGTCTGGTGGTCGAAACCGCGGTGAAATTGATCAAAAGCGTGGCGGAGT
GAGAGCGCTCCGAGGTTTCAACCTGGAGTCTGCACAACATCACCTATAAC
CCCAAACATGACGGACGCGGGCGGCAGCGCAGGAAACTTAGACCTCCTCC
TGCCTTGGAAGACATGCGTACTGCAGCACTCAACTCCACGATTTAGCGGC
AACGACATGACGATAAGCCACTTAATTATCACCGACACTAGAGCAGCAGT
GGTTAGCACGCAGCGAACAGGTACAGTACCACCTTTACGACTTTGAACCA
ACAACCTAACAACCACCGACCTCACCCCCCTCGATGTTTCTTTGCACACA
AGGTTACGGGTCGAAACCTGCAGACACAGCAGTCGAGAGGGAGAGGGGGC
GACGGAGGCGGCATGCTCTACAACCAGCAGCACCGCCGCGGTGCCGGCGG
CGGCGGCGGCGCACGGGGACACGGCGGGGGCGGCCCCCAACCATGGCCGA
CAGGCTTTCTGGTCGACGCCCCGCCATCCCCCAAGCCGTGGAGAGGGCGG
ACGCTGTCCCAGGACAACATGAGCTGGCGGACGGTCAGCACCGGCAACCT
CAGCGTTGCGGACGAGAGCTTCTCCCAGTCCTCCGTGGCCGACTGGCACG
GGGCCGACAGTGAGGACGGGGAAACGAGCATCGGGAGCGGGAACGGCAGC
GGGAGCGGGAACGGCAGCGGGAGCGGCAGCGCCGGCGACGCCATCGTTCG
CGGCGGCGTGGGCGTCGCCGCCGCAGACGGGTTGCCTTCGCAGCAGCAGC
AGCAGCAGGGGCCGCCGCGCAACAACAACGACAACCTCGGCAACCTCGGC
AACCACCGCTACGACGGCGACGGCAGCGGCAGCGGGGGTAGTGCTGCCAG
GCGGAACGGCGGCAGCGGCGGCACGATCGCGCCCCCCCTCGGGGGCGGAA
ACCGCAACAACGGGGAGGCGGTCCATCACGGCGGCGGCCAGATGGACCAC
CGGCTGGAAAAAGGCGACAGCAGCGGTAATGGTGATGGCGACAGCGGCAG
CATGGGCTTCGCAGGCGCGGGGCAACCCGCCGCGGGCGTCGCCGGAGCGA
CCCGCGGAGAAGCGGCCACCCATCGCCCCCCGCTTGTCCCTTTCGCGCCG
ATCCCGCGCCTCAGAGCGTTTCCCGCGCAGCGTCGGATCCACGGGACTTA
CGGCCCCGGTGCGGACGGCGACAGCGGCGGCGGCGGCAGAAAGGTGCCGG
GACGCACCGTTGCGTTCGCGGCTCCTCCAGCCCAGGCTTCCCCGCCCCGG
CGACCACCTGGCGTTGGCCGGGGGGGCGCGGTGGTGGACGTTTTGCCTCT
GCGCCCACGGCCTGTTGCAGCAGCCGCAGGTAGGCAGCAGCCGGTGGAGG
CGGCGGCGGCGGCGGGTGTCTGTGGGGGC back to topCoding sequence (CDS) from alignment at C-linearis_contig98:477172..481250- >mRNA_C-linearis_contig98.17134.1 ID=mRNA_C-linearis_contig98.17134.1|Name=mRNA_C-linearis_contig98.17134.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2436bp|location=Sequence derived from alignment at C-linearis_contig98:477172..481250- (Chordaria linearis ClinC8C monoicous)
ATGGTTTACCAGCGAGCAGGCGGGAGAGAGAGATGCGTGGGGTGCGGCTT
CGGGAAGGGTCAGTTTCAGGTTCAATACGATGATGACCGTGACGGGTCAG
GTCGTGGCTACTGCAGCCTCGACTGCTACACCTCCGCCAAGATGGTTTAC
CAGCGAGCAGGCGGGAGAGAGAGATGCGTGGGGTGCGGCTTCGGGAAGGG
TCAGTTTCAGGTTCAATACGATGATGACCGTGACGGGTCAGGTCGTGGCT
ACTGCAGCCTCGACTGCTACACCTCCGCCAAGGTTACGGGTCGAAACCTG
CAGACACAGCAGTCGAGAGGGAGAGGGGGCGACGGAGGCGGCATGCTCTA
CAACCAGCAGCACCGCCGCGGTGCCGGCGGCGGCGGCGGCGCACGGGGAC
ACGGCGGGGGCGGCCCCCAACCATGGCCGACAGGCTTTCTGGTCGACGCC
CCGCCATCCCCCAAGCCGTGGAGAGGGCGGACGCTGTCCCAGGACAACAT
GAGCTGGCGGACGGTCAGCACCGGCAACCTCAGCGTTGCGGACGAGAGCT
TCTCCCAGTCCTCCGTGGCCGACTGGCACGGGGCCGACAGTGAGGACGGG
GAAACGAGCATCGGGAGCGGGAACGGCAGCGGGAGCGGGAACGGCAGCGG
GAGCGGCAGCGCCGGCGACGCCATCGTTCGCGGCGGCGTGGGCGTCGCCG
CCGCAGACGGGTTGCCTTCGCAGCAGCAGCAGCAGCAGGGGCCGCCGCGC
AACAACAACGACAACCTCGGCAACCTCGGCAACCACCGCTACGACGGCGA
CGGCAGCGGCAGCGGGGGTAGTGCTGCCAGGCGGAACGGCGGCAGCGGCG
GCACGATCGCGCCCCCCCTCGGGGGCGGAAACCGCAACAACGGGGAGGCG
GTCCATCACGGCGGCGGCCAGATGGACCACCGGCTGGAAAAAGGCGACAG
CAGCGGTAATGGTGATGGCGACAGCGGCAGCATGGGCTTCGCAGGCGCGG
GGCAACCCGCCGCGGGCGTCGCCGGAGCGACCCGCGGAGAAGCGGCCACC
CATCGCCCCCCGCTTGTCCCTTTCGCGCCGATCCCGCGCCTCAGAGCGTT
TCCCGCGCAGCGTCGGATCCACGGGACTTACGGCCCCGGTGCGGACGGCG
ACAGCGGCGGCGGCGGCAGAAAGGTGCCGGGACGCACCGTTGCGTTCGCG
GCTCCTCCAGCCCAGGCTTCCCCGCCCCGGCGACCACCTGGCGTTGGCCG
GGGGGGCGCGGTGGTGGACGTTTTGCCTCTGCGCCCACGGCCTGTTGCAG
CAGCCGCAGGTAGGCAGCAGCCGGTGGAGGCGGCGGCGGCGGCGGGTGTC
TGTGGGGGCGTTACGGGTCGAAACCTGCAGACACAGCAGTCGAGAGGGAG
AGGGGGCGACGGAGGCGGCATGCTCTACAACCAGCAGCACCGCCGCGGTG
CCGGCGGCGGCGGCGGCGCACGGGGACACGGCGGGGGCGGCCCCCAACCA
TGGCCGACAGGCTTTCTGGTCGACGCCCCGCCATCCCCCAAGCCGTGGAG
AGGGCGGACGCTGTCCCAGGACAACATGAGCTGGCGGACGGTCAGCACCG
GCAACCTCAGCGTTGCGGACGAGAGCTTCTCCCAGTCCTCCGTGGCCGAC
TGGCACGGGGCCGACAGTGAGGACGGGGAAACGAGCATCGGGAGCGGGAA
CGGCAGCGGGAGCGGGAACGGCAGCGGGAGCGGCAGCGCCGGCGACGCCA
TCGTTCGCGGCGGCGTGGGCGTCGCCGCCGCAGACGGGTTGCCTTCGCAG
CAGCAGCAGCAGCAGGGGCCGCCGCGCAACAACAACGACAACCTCGGCAA
CCTCGGCAACCACCGCTACGACGGCGACGGCAGCGGCAGCGGGGGTAGTG
CTGCCAGGCGGAACGGCGGCAGCGGCGGCACGATCGCGCCCCCCCTCGGG
GGCGGAAACCGCAACAACGGGGAGGCGGTCCATCACGGCGGCGGCCAGAT
GGACCACCGGCTGGAAAAAGGCGACAGCAGCGGTAATGGTGATGGCGACA
GCGGCAGCATGGGCTTCGCAGGCGCGGGGCAACCCGCCGCGGGCGTCGCC
GGAGCGACCCGCGGAGAAGCGGCCACCCATCGCCCCCCGCTTGTCCCTTT
CGCGCCGATCCCGCGCCTCAGAGCGTTTCCCGCGCAGCGTCGGATCCACG
GGACTTACGGCCCCGGTGCGGACGGCGACAGCGGCGGCGGCGGCAGAAAG
GTGCCGGGACGCACCGTTGCGTTCGCGGCTCCTCCAGCCCAGGCTTCCCC
GCCCCGGCGACCACCTGGCGTTGGCCGGGGGGGCGCGGTGGTGGACGTTT
TGCCTCTGCGCCCACGGCCTGTTGCAGCAGCCGCAGGTAGGCAGCAGCCG
GTGGAGGCGGCGGCGGCGGCGGGTGTCTGTGGGGGC back to top
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