prot_C-linearis_contig98.17117.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig98.17117.1
Unique Nameprot_C-linearis_contig98.17117.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length266
Homology
[Close]
BLAST of mRNA_C-linearis_contig98.17117.1 vs. uniprot
Match: A0A8B7ZC05_ACAPL (leucine-rich repeat-containing protein 74A-like isoform X1 n=3 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7ZC05_ACAPL)

HSP 1 Score: 55.5 bits (132), Expect = 4.230e-5
Identity = 26/63 (41.27%), Postives = 41/63 (65.08%), Query Frame = 0 
Query:   11 TGKHAYTSACARLGIVPVSHILSRLSSERLSLRHALLNPSSAKALSEGLSFNRCIRSLNLGSN 73
            TG+ AYT AC  +G+VPVSH L  +++ ++S++H  L P  AKA++  L  N  + +L+L  N
Sbjct:  142 TGRRAYTQACKEIGVVPVSHFLRHITTNKISMKHHGLGPLGAKAIAIPLVTNTSVLTLDLEDN 204
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig98.17117.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A8B7ZC05_ACAPL4.230e-541.27leucine-rich repeat-containing protein 74A-like is... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM00368LRR_RI_2coord: 119..146
e-value: 16.0
score: 8.6
coord: 90..117
e-value: 2.4
score: 14.5
coord: 62..89
e-value: 0.13
score: 21.4
coord: 152..179
e-value: 120.0
score: 2.5
coord: 32..61
e-value: 55.0
score: 4.9
NoneNo IPR availablePANTHERPTHR24114:SF30LEUCINE-RICH REPEAT-CONTAINING PROTEIN 74Acoord: 205..265
coord: 5..197
NoneNo IPR availablePANTHERPTHR24114FAMILY NOT NAMEDcoord: 205..265
coord: 5..197
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 38..265
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 14..149
e-value: 5.2E-19
score: 70.0
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 150..266
e-value: 1.8E-14
score: 55.1
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 90..105
e-value: 0.14
score: 12.3
coord: 62..83
e-value: 0.035
score: 14.1

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig98contigC-linearis_contig98:277413..280323 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig98.17117.1mRNA_C-linearis_contig98.17117.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig98 277413..280323 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig98.17117.1 ID=prot_C-linearis_contig98.17117.1|Name=mRNA_C-linearis_contig98.17117.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=266bp
ERRDEHQHQHTGKHAYTSACARLGIVPVSHILSRLSSERLSLRHALLNPS
SAKALSEGLSFNRCIRSLNLGSNLLGDDSARPLLEAISGNLSLTKLDLSR
NLLSDRFGELLAQSLASPLCALRDLVLAGNFLSDRFTDALSKGLRNLIVV
GFSPLRNLDVSNNKICDRNRETLASILCRCSLYSLNLSWNDLRESETAKA
GRVGDNFDVNAGYPLANAALVHPGQLVSLELSFNALPDVFGVIVGGMLAG
NISLAVLDLSRNHLGQ
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt