mRNA_C-linearis_contig98.17133.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig98.17133.1
Unique NamemRNA_C-linearis_contig98.17133.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig98.17133.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig98contigC-linearis_contig98:474907..475384 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size452
Cds size339
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig98.17133.1prot_C-linearis_contig98.17133.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig98 474907..475271 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930838.6719875-CDS-C-linearis_contig98:474906..4749561622930838.6719875-CDS-C-linearis_contig98:474906..474956Chordaria linearis ClinC8C monoicousCDSC-linearis_contig98 474907..474956 -
1690881275.8429978-CDS-C-linearis_contig98:474906..4749561690881275.8429978-CDS-C-linearis_contig98:474906..474956Chordaria linearis ClinC8C monoicousCDSC-linearis_contig98 474907..474956 -
1622930838.6901748-CDS-C-linearis_contig98:474982..4752711622930838.6901748-CDS-C-linearis_contig98:474982..475271Chordaria linearis ClinC8C monoicousCDSC-linearis_contig98 474983..475271 -
1690881275.8515854-CDS-C-linearis_contig98:474982..4752711690881275.8515854-CDS-C-linearis_contig98:474982..475271Chordaria linearis ClinC8C monoicousCDSC-linearis_contig98 474983..475271 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930838.723356-UTR-C-linearis_contig98:475271..4753841622930838.723356-UTR-C-linearis_contig98:475271..475384Chordaria linearis ClinC8C monoicousUTRC-linearis_contig98 475272..475384 -
1690881275.859986-UTR-C-linearis_contig98:475271..4753841690881275.859986-UTR-C-linearis_contig98:475271..475384Chordaria linearis ClinC8C monoicousUTRC-linearis_contig98 475272..475384 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig98.17133.1

>prot_C-linearis_contig98.17133.1 ID=prot_C-linearis_contig98.17133.1|Name=mRNA_C-linearis_contig98.17133.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=113bp
MFYEMWVTVSRAPLGDMDRAGFSYLVHEVCAFFFLAERLPPPPRSNRSKQ
RFHPLRGRCLCGSGRRSTCSLWRHQILLRSLQHHTSVWCERGGGVQLSNY
RPAVVFVRCMFCF
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mRNA from alignment at C-linearis_contig98:474907..475384-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig98.17133.1 ID=mRNA_C-linearis_contig98.17133.1|Name=mRNA_C-linearis_contig98.17133.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=478bp|location=Sequence derived from alignment at C-linearis_contig98:474907..475384- (Chordaria linearis ClinC8C monoicous)
GTATGTAAATATTAATGTTAGGACGAGGATTGGGTCGGACGGAGAAAGGT
GGGGTGGTCAATAAGAGCGATCCTCGTTGGGCGGGGCTTGGCGGTGGTGA
ATAGTCAACGTAAATGTTCTACGAAATGTGGGTTACAGTTTCGAGAGCGC
CGTTGGGGGACATGGACAGGGCGGGGTTCTCGTACCTCGTACATGAGGTG
TGTGCTTTCTTTTTTCTCGCGGAGCGTTTACCCCCCCCCCCCCGTTCCAA
CCGTTCCAAACAGAGGTTTCATCCTCTGCGTGGCCGGTGTTTGTGTGGGT
CTGGTCGCCGAAGCACATGTAGCTTGTGGCGGCATCAAATTTTGTTACGT
TCTCTTCAGCACCATACAAGTGTCTGGTGTGAAAGAGGAGGGGGGGTTCA
GTGTCAAACTACGGGGGGGGGGGTTCAGTATCAAACTACAGGCCAGCTGT
GGTCTTTGTCCGGTGCATGTTTTGTTTT
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Coding sequence (CDS) from alignment at C-linearis_contig98:474907..475384-

>mRNA_C-linearis_contig98.17133.1 ID=mRNA_C-linearis_contig98.17133.1|Name=mRNA_C-linearis_contig98.17133.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at C-linearis_contig98:474907..475384- (Chordaria linearis ClinC8C monoicous)
ATGTTCTACGAAATGTGGGTTACAGTTTCGAGAGCGCCGTTGGGGGACAT
GGACAGGGCGGGGTTCTCGTACCTCGTACATGAGGTGTGTGCTTTCTTTT
TTCTCGCGGAGCGTTTACCCCCCCCCCCCCGTTCCAACCGTTCCAAACAG
AGGTTTCATCCTCTGCGTGGCCGGTGTTTGTGTGGGTCTGGTCGCCGAAG
CACATGTAGCTTGTGGCGGCATCAAATTTTGTTACGTTCTCTTCAGCACC
ATACAAGTGTCTGGTGTGAAAGAGGAGGGGGGGTTCAGTATGTTCTACGA
AATGTGGGTTACAGTTTCGAGAGCGCCGTTGGGGGACATGGACAGGGCGG
GGTTCTCGTACCTCGTACATGAGGTGTGTGCTTTCTTTTTTCTCGCGGAG
CGTTTACCCCCCCCCCCCCGTTCCAACCGTTCCAAACAGAGGTTTCATCC
TCTGCGTGGCCGGTGTTTGTGTGGGTCTGGTCGCCGAAGCACATGTAGCT
TGTGGCGGCATCAAATTTTGTTACGTTCTCTTCAGCACCATACAAGTGTC
TGGTGTGAAAGAGGAGGGGGGGTTCAGTTATCAAACTACAGGCCAGCTGT
GGTCTTTGTCCGGTGCATGTTTTGTTTTTATCAAACTACAGGCCAGCTGT
GGTCTTTGTCCGGTGCATGTTTTGTTTT
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