prot_C-linearis_contig97.17103.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig97.17103.1
Unique Nameprot_C-linearis_contig97.17103.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length238
Homology
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BLAST of mRNA_C-linearis_contig97.17103.1 vs. uniprot
Match: D8LL06_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL06_ECTSI)

HSP 1 Score: 442 bits (1136), Expect = 4.000e-156
Identity = 214/237 (90.30%), Postives = 225/237 (94.94%), Query Frame = 0 
Query:    1 ADKVPSDPNELQRLEREYYERAMERNKRKRQEDIDRLTKLRHNLRDLPKQRQCHRYRWTQTETTFDVEIPMLKACTDEDLYLVVERDQMQVAIKTDESFGAITGVFPGDVDATSCSFRIHSRFNEPYIHLEIVKLTAPGMYEFWHELLQGEKESPTIRFKGETPRYSWKQNAETIELEIPVPGDVTKRKTMLELDPAGDRMHLSFKNRPDFEPLEGKFKDLISPLDSVWMLGERAYL 237
            A ++P DPNELQRLEREYYERA +RN RKRQEDIDRLT+LRHNLRDLP QRQCHRYRWTQTETTFDVEIPMLKAC DEDLYLVVE+DQMQVAIKTDESFGAITGVFPGDVDA SCSFRIHSRFNEPYIHLEIVKLTAPGMYEFWHELLQGE+ESPTIRFKGETPRYSWKQNAETIEL+IPVP DVTKRKT L+LDPAGDR+H+SF NRPDFEPLEGKFK LISPLDSVWMLGE A+L
Sbjct:    5 AQRIPEDPNELQRLEREYYERAKKRNTRKRQEDIDRLTELRHNLRDLPMQRQCHRYRWTQTETTFDVEIPMLKACRDEDLYLVVEKDQMQVAIKTDESFGAITGVFPGDVDARSCSFRIHSRFNEPYIHLEIVKLTAPGMYEFWHELLQGEEESPTIRFKGETPRYSWKQNAETIELQIPVPDDVTKRKTTLDLDPAGDRIHVSFSNRPDFEPLEGKFKGLISPLDSVWMLGELAFL 241
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BLAST of mRNA_C-linearis_contig97.17103.1 vs. uniprot
Match: A0A836CLX2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLX2_9STRA)

HSP 1 Score: 137 bits (344), Expect = 1.050e-35
Identity = 71/203 (34.98%), Postives = 108/203 (53.20%), Query Frame = 0 
Query:   46 DLPKQRQCHRYRWTQTETTFDVEIPMLKACTDEDLYLVVERDQMQVAIKTDESFGAITGVFPGDVDATSCSFRIHSRFN-EPYIHLEIVKLTAPGMYEFWHELLQGEKESPTIRFKGETPRYSWKQNAETIELEIPVPGDVTKRKTMLELDPAGD--------------RMHLSFKNRPDFEPLEGKFKDLISPLDSVWMLGE 233
            ++P QR+CH+YRW QT     VE+P+ +AC  EDL  V+    MQ++I++D +F  + G FPG VD  + ++ +HS  + + Y+ L + KL  PG  E W+ LL+GE  +PT+RF+G T  Y+W Q    I++   VP   T   T ++    G               R+ LS +  P+    E +F+  I   D  WML E
Sbjct:   43 EVPTQRECHQYRWFQTNELISVEVPLYRACKAEDLSFVLSEGGMQISIRSDPTFAPLAGEFPGKVDTRASTYSLHSDGSGDHYLALVLRKLALPGTSELWYCLLEGETPAPTVRFRGATRLYAWTQRPRVIDVAFRVPPRTTAATTRVDFGEDGXXXXXXXXXXXXXXARLSLSVEGCPELTRFERRFQGAIDAADCFWMLDE 245
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig97.17103.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LL06_ECTSI4.000e-15690.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CLX2_9STRA1.050e-3534.98Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008978HSP20-like chaperoneGENE3D2.60.40.790coord: 45..154
e-value: 1.3E-10
score: 43.2
coord: 155..237
e-value: 2.1E-9
score: 39.3
IPR008978HSP20-like chaperoneSUPERFAMILY49764HSP20-like chaperonescoord: 53..160
IPR008978HSP20-like chaperoneSUPERFAMILY49764HSP20-like chaperonescoord: 155..234
IPR007052CS domainPFAMPF04969CScoord: 164..231
e-value: 1.5E-5
score: 25.9
coord: 55..121
e-value: 0.0011
score: 19.9
IPR007052CS domainPROSITEPS51203CScoord: 161..237
score: 9.593
NoneNo IPR availablePANTHERPTHR12356:SF3NUCLEAR MIGRATION PROTEIN NUDCcoord: 13..156
NoneNo IPR availablePANTHERPTHR12356:SF3NUCLEAR MIGRATION PROTEIN NUDCcoord: 156..232
IPR037898NudC familyPANTHERPTHR12356NUCLEAR MOVEMENT PROTEIN NUDCcoord: 13..156
coord: 156..232

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig97contigC-linearis_contig97:399038..401371 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig97.17103.1mRNA_C-linearis_contig97.17103.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig97 399038..401371 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig97.17103.1 ID=prot_C-linearis_contig97.17103.1|Name=mRNA_C-linearis_contig97.17103.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=238bp
ADKVPSDPNELQRLEREYYERAMERNKRKRQEDIDRLTKLRHNLRDLPKQ
RQCHRYRWTQTETTFDVEIPMLKACTDEDLYLVVERDQMQVAIKTDESFG
AITGVFPGDVDATSCSFRIHSRFNEPYIHLEIVKLTAPGMYEFWHELLQG
EKESPTIRFKGETPRYSWKQNAETIELEIPVPGDVTKRKTMLELDPAGDR
MHLSFKNRPDFEPLEGKFKDLISPLDSVWMLGERAYL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008978HSP20-like_chaperone
IPR007052CS_dom
IPR037898NudC_fam