prot_C-linearis_contig97.17098.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig97.17098.1
Unique Nameprot_C-linearis_contig97.17098.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length690
Homology
BLAST of mRNA_C-linearis_contig97.17098.1 vs. uniprot
Match: D8LKW0_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKW0_ECTSI)

HSP 1 Score: 434 bits (1116), Expect = 3.420e-140
Identity = 282/583 (48.37%), Postives = 321/583 (55.06%), Query Frame = 0
Query:  113 DGERCSICLDEWTSKGKHRICTLLCGHLFGKSCIERWLKERRSCPQCGAKVGTKGSNRVIPLFVQNLVAKDTGELETARTCLEEEKRLRKQCEAERVRLSIENASLKDQLSRQGMSTMGKTPNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAQAQGSPTSGSGGLTGATPPGQPISSTQGGIPLLSSGAGPTGLCDHSSSSNNSXXXXXXXXXXXXXXXXGQTQSLPIPLSLGSGIADSRRD-RTAEILLPMSFGPRDAGSASASXXXASPGRAAHSHHNPSPRDFRGSTGGXXXXXXXXXXXXXAASVRRVTVRSEHLLSRNVQAGRVVAFAGGAAGALLVSQEFGERWP-----QHGITKFSLADLRHHKNIHLHREQIRDIKFSVEGGNVSYILSTGFDKTLKVCDLRTDTVIVSYDLEGNGWSCQWSATNPTQMFCGVVDEARVSAVQLFDLRSTAGAVRKLRATARQRQPIHSICHTADDLLLCAAMGGVWAWGGGTK 689
            DGERCSICLD WTSKGKHRICTLLCGHLFG+SCIERWLKERRSCPQCG KVG KG+NR+IPLF+ NLVA+DTGELETART LEEEKRLRKQCEAERVR+SIENASLKD+LSR      G   +                                                                                                            A++QGS ++      G   P + +S           GAGP G+   + SS+                    +   P P    SG A +    +T     P+  G  D G+   S      G AA            GS G              AA    V VR E LLSR+V +GRV AFAGGAAGAL+VSQE G         +HG+TKFSLADLRH+K+IHLHREQ+RD+KFS +GG+V YILST FDKTLKVCDLRTD+V+V Y+LEG+GWSCQWS+T PTQMFCGVVD  R SAVQLFDLRSTAGAVRKLRA A QRQPIHSICHTADD+L CA MGGVWAWGGGTK
Sbjct:   41 DGERCSICLDPWTSKGKHRICTLLCGHLFGQSCIERWLKERRSCPQCGTKVGAKGTNRIIPLFLHNLVAQDTGELETARTLLEEEKRLRKQCEAERVRVSIENASLKDRLSRLDQGGAGVVSSIV----------------------------------------------------------------------------------------------------------ARSQGSVST-----PGCPKPKRTLSQL-----ATPGGAGP-GVSSVAYSSS--------------VDIGSNSFMTPCPKISHSGPAVAYPQFKTPPPRRPI--GNLDVGAGGGSGGW---GLAATES---------GSEG--------------AAVGSTVAVRFEQLLSRDVLSGRVAAFAGGAAGALVVSQELGIAGGSRGSLRHGVTKFSLADLRHNKSIHLHREQVRDVKFSADGGSVGYILSTSFDKTLKVCDLRTDSVVVQYELEGSGWSCQWSSTAPTQMFCGVVDGTRTSAVQLFDLRSTAGAVRKLRAAASQRQPIHSICHTADDVLCCATMGGVWAWGGGTK 464          
BLAST of mRNA_C-linearis_contig97.17098.1 vs. uniprot
Match: A0A6H5JB60_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB60_9PHAE)

HSP 1 Score: 435 bits (1118), Expect = 6.850e-139
Identity = 278/585 (47.52%), Postives = 322/585 (55.04%), Query Frame = 0
Query:  111 KSDGERCSICLDEWTSKGKHRICTLLCGHLFGKSCIERWLKERRSCPQCGAKVGTKGSNRVIPLFVQNLVAKDTGELETARTCLEEEKRLRKQCEAERVRLSIENASLKDQLSRQGMSTMGKTPNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAQAQGSPTSGSGGLTGATPPGQPISSTQGGIPLLSSGAGPTGLCDHSSSSNNSXXXXXXXXXXXXXXXXGQTQSLPIP-LSLGSGIADSRRDRTAEILLPMSFGPRDAGSASASXXXASPGRAAHSHHNPSPRDFRGSTGGXXXXXXXXXXXXXAASVRRVTVRSEHLLSRNVQAGRVVAFAGGAAGALLVSQEFGERWP-----QHGITKFSLADLRHHKNIHLHREQIRDIKFSVEGGNVSYILSTGFDKTLKVCDLRTDTVIVSYDLEGNGWSCQWSATNPTQMFCGVVDEARVSAVQLFDLRSTAGAVRKLRATARQRQPIHSICHTADDLLLCAAMGGVWAWGGGTK 689
            ++DGERCSICLD WTSKGKHRICTLLCGHLFG+SCIERWLKERRSCPQCGAKVG KG+NR+IPLF+QNLVA+DTGELETART LEEEKRLRKQCEAERVR+SIENASLKD+LSR      G   +                                                                                                            A++Q S ++      G   P + +S         + G    G+   + SS+                    +   P P +S     A   R +T     P+  G  D G+   S      GR   +  + S     GST                     V VR E LLSR+V +GRV AFAGGAAGAL+VSQE G         +HG+TKFSLADLRH+K+IHLHREQ+RD+KFS +GG+V YILST FDKTLKVCDLRTD+V+V Y+LEG+GWSCQWS+T PTQMFCGVVD  R SAVQLFDLRSTAGAVRKLRA A QRQPIHSICHTADD+L CA MGGVWAWGGGTK
Sbjct:  114 EADGERCSICLDPWTSKGKHRICTLLCGHLFGQSCIERWLKERRSCPQCGAKVGAKGTNRIIPLFLQNLVAQDTGELETARTLLEEEKRLRKQCEAERVRVSIENASLKDRLSRLNQGGAGVVSSSV----------------------------------------------------------------------------------------------------------ARSQESVST-----PGCPKPIRTLSQ------FATPGRAGPGVSSVAYSSS--------------VDIGSSSFMTPCPKISHPGPAAAYSRFKTPPPRRPI--GNLDVGAGGGSG-----GRGLAATESGSEGAAAGST---------------------VAVRFEQLLSRDVLSGRVAAFAGGAAGALVVSQELGIAGGSRGSLRHGVTKFSLADLRHNKSIHLHREQLRDVKFSADGGSVGYILSTSFDKTLKVCDLRTDSVVVQYELEGSGWSCQWSSTTPTQMFCGVVDGTRTSAVQLFDLRSTAGAVRKLRAAASQRQPIHSICHTADDVLCCATMGGVWAWGGGTK 539          
BLAST of mRNA_C-linearis_contig97.17098.1 vs. uniprot
Match: A0A851UBM4_9PASS (RFWD3 ligase (Fragment) n=2 Tax=Passeriformes TaxID=9126 RepID=A0A851UBM4_9PASS)

HSP 1 Score: 99.0 bits (245), Expect = 9.560e-18
Identity = 51/115 (44.35%), Postives = 75/115 (65.22%), Query Frame = 0
Query:  111 KSDGERCSICLDEWTSKGKHRICTLLCGHLFGKSCIERWLK-ERRSCPQCGAKVGTKGSNRVIPLFVQNLVAKDTGELETARTCLEEEKRLRKQCEAERVRLSIENASLKDQLSR 224
            + +G+ C+IC ++WT+ G+HR+C L CGHLFG +CIERWLK +   CPQC  K   K S+ V+ L+ + L A DT E E  R+ LE+E+ LR+Q E E  +  ++   L D+ S+
Sbjct:  253 EEEGDTCAICFEQWTNAGEHRLCALRCGHLFGYTCIERWLKGQAGKCPQCNKKA--KRSDIVV-LYARTLKALDTSEQERMRSSLEKEQMLRRQAELESAQSRLQLQVLTDECSK 364          
BLAST of mRNA_C-linearis_contig97.17098.1 vs. uniprot
Match: A0A267GDQ9_9PLAT (RING-type domain-containing protein n=1 Tax=Macrostomum lignano TaxID=282301 RepID=A0A267GDQ9_9PLAT)

HSP 1 Score: 96.3 bits (238), Expect = 1.360e-17
Identity = 50/114 (43.86%), Postives = 69/114 (60.53%), Query Frame = 0
Query:  115 ERCSICLDEWTSKGKHRICTLLCGHLFGKSCIERWLKERRSCPQCGAKVGTKGSNRVIPLFVQNLVAKDTGELETARTCLEEEKRLRKQCEAERVRLSIENASLKDQ---LSRQ 225
            E C+IC + WTS G+HR+C L CGHLFGKSC+ERWL+ R+ CPQC         + V+PL+V NL A D  E E  +  +++ KR +   E E   + +    L+D+   LSRQ
Sbjct:  245 EGCTICFEPWTSSGEHRVCALRCGHLFGKSCVERWLETRQQCPQCNRNCRR---HEVLPLYVTNLRAVDNSENEALKLEIDKIKRAKLTAEQEAGDMRLRLDMLRDENRRLSRQ 355          
BLAST of mRNA_C-linearis_contig97.17098.1 vs. uniprot
Match: UPI00193A6C01 (E3 ubiquitin-protein ligase RFWD3-like n=1 Tax=Styela clava TaxID=7725 RepID=UPI00193A6C01)

HSP 1 Score: 97.8 bits (242), Expect = 1.770e-17
Identity = 48/104 (46.15%), Postives = 66/104 (63.46%), Query Frame = 0
Query:  111 KSDGERCSICLDEWTSKGKHRICTLLCGHLFGKSCIERWLKERRSCPQCGAKVGTKGSNRVIPLFVQNLVAKDTGELETARTCLEEEKRLRKQCEAERVRLSIE 214
            + DG+ C IC + W++ GKHR+ +L CGHLFG+SCIERW+K  + CPQC  K   K   RV  L+ + L A DT EL  A T  E EK+LR+  E E  ++ ++
Sbjct:  159 EEDGDCCPICFEHWSNSGKHRLSSLKCGHLFGQSCIERWMKGAKKCPQCNTKA-RKADIRV--LYAKKLTAVDTTELTEATTAFEHEKKLRRNKEMELAKVQMQ 259          
BLAST of mRNA_C-linearis_contig97.17098.1 vs. uniprot
Match: A0A7K5DY35_POLCE (RFWD3 ligase (Fragment) n=1 Tax=Polioptila caerulea TaxID=66707 RepID=A0A7K5DY35_POLCE)

HSP 1 Score: 97.4 bits (241), Expect = 2.940e-17
Identity = 51/115 (44.35%), Postives = 74/115 (64.35%), Query Frame = 0
Query:  111 KSDGERCSICLDEWTSKGKHRICTLLCGHLFGKSCIERWLK-ERRSCPQCGAKVGTKGSNRVIPLFVQNLVAKDTGELETARTCLEEEKRLRKQCEAERVRLSIENASLKDQLSR 224
            + +G+ C+IC ++WT+ G HR+C L CGHLFG +CIERWLK +   CPQC  K   K S+ VI L+ + L A DT E E  ++ LE+E+ LR+Q E E  +  ++   L D+ S+
Sbjct:  259 EEEGDTCAICFEQWTNAGDHRLCALRCGHLFGYTCIERWLKGQAGKCPQCNKKA--KRSDIVI-LYARTLKALDTSEQERMKSSLEKEQMLRRQAELESAQSRLQLQVLTDECSK 370          
BLAST of mRNA_C-linearis_contig97.17098.1 vs. uniprot
Match: A0A1I8IIU3_9PLAT (RING-type domain-containing protein n=1 Tax=Macrostomum lignano TaxID=282301 RepID=A0A1I8IIU3_9PLAT)

HSP 1 Score: 96.3 bits (238), Expect = 3.890e-17
Identity = 50/114 (43.86%), Postives = 69/114 (60.53%), Query Frame = 0
Query:  115 ERCSICLDEWTSKGKHRICTLLCGHLFGKSCIERWLKERRSCPQCGAKVGTKGSNRVIPLFVQNLVAKDTGELETARTCLEEEKRLRKQCEAERVRLSIENASLKDQ---LSRQ 225
            E C+IC + WTS G+HR+C L CGHLFGKSC+ERWL+ R+ CPQC         + V+PL+V NL A D  E E  +  +++ KR +   E E   + +    L+D+   LSRQ
Sbjct:  245 EGCTICFEPWTSSGEHRVCALRCGHLFGKSCVERWLETRQQCPQCNRNCRR---HEVLPLYVTNLRAVDNSENEALKLEIDKIKRAKLTAEQEAGDMRLRLDMLRDENRRLSRQ 355          
BLAST of mRNA_C-linearis_contig97.17098.1 vs. uniprot
Match: A0A7R5KIL2_9PASS (E3 ubiquitin-protein ligase RFWD3 isoform X1 n=4 Tax=Pipridae TaxID=114313 RepID=A0A7R5KIL2_9PASS)

HSP 1 Score: 96.7 bits (239), Expect = 5.320e-17
Identity = 51/115 (44.35%), Postives = 74/115 (64.35%), Query Frame = 0
Query:  111 KSDGERCSICLDEWTSKGKHRICTLLCGHLFGKSCIERWLK-ERRSCPQCGAKVGTKGSNRVIPLFVQNLVAKDTGELETARTCLEEEKRLRKQCEAERVRLSIENASLKDQLSR 224
            + +G+ C+IC ++WT+ G+HR+  L CGHLFG +CIERWLK +   CPQC  K   K S+ V+ L+ + L A DT E E  R+ LE+EK LR+Q E E  +  ++   L D+ S+
Sbjct:  286 EEEGDTCAICFEQWTNAGEHRLSALRCGHLFGYTCIERWLKGQAGKCPQCNKKA--KRSDIVV-LYARTLKALDTSEQERMRSSLEKEKMLRRQAELESAQSRLQLQVLTDECSK 397          
BLAST of mRNA_C-linearis_contig97.17098.1 vs. uniprot
Match: A0A851CAX2_CALVR (RFWD3 ligase (Fragment) n=1 Tax=Calyptomena viridis TaxID=135972 RepID=A0A851CAX2_CALVR)

HSP 1 Score: 95.1 bits (235), Expect = 5.440e-17
Identity = 50/115 (43.48%), Postives = 74/115 (64.35%), Query Frame = 0
Query:  111 KSDGERCSICLDEWTSKGKHRICTLLCGHLFGKSCIERWLK-ERRSCPQCGAKVGTKGSNRVIPLFVQNLVAKDTGELETARTCLEEEKRLRKQCEAERVRLSIENASLKDQLSR 224
            + +G+ C+IC ++WT+ G HR+  L CGHLFG +CIERWLK +   CPQC  K   K S+ V+ L+ + L A DT E E  R+ LE+E++LR+Q E E  +  ++   L D+ S+
Sbjct:  256 EEEGDTCTICFEQWTNAGDHRLSALRCGHLFGYTCIERWLKGQAGKCPQCNKKA--KRSDIVV-LYARTLKALDTSEQEHMRSSLEKEQKLRRQAELESAQSRLQLQVLTDECSK 367          
BLAST of mRNA_C-linearis_contig97.17098.1 vs. uniprot
Match: A0A8D2NUR9_ZOSLA (Ring finger and WD repeat domain 3 n=2 Tax=Passeriformes TaxID=9126 RepID=A0A8D2NUR9_ZOSLA)

HSP 1 Score: 95.9 bits (237), Expect = 5.620e-17
Identity = 51/115 (44.35%), Postives = 74/115 (64.35%), Query Frame = 0
Query:  111 KSDGERCSICLDEWTSKGKHRICTLLCGHLFGKSCIERWLK-ERRSCPQCGAKVGTKGSNRVIPLFVQNLVAKDTGELETARTCLEEEKRLRKQCEAERVRLSIENASLKDQLSR 224
            + +G+ C+IC ++WT+ G HR+  L CGHLFG +CIERWLK +   CPQC  K   K S+ VI L+ + L A DT E E  R+ LE+E++LR+Q E E  +  ++   L D+ S+
Sbjct:   63 EEEGDTCAICFEQWTNAGDHRLSALRCGHLFGYTCIERWLKGQAGKCPQCNKKA--KRSDIVI-LYARTLKALDTSEQERMRSSLEKEQKLRRQAELESAQSRLQLQVLTDECSK 174          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig97.17098.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKW0_ECTSI3.420e-14048.37RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JB60_9PHAE6.850e-13947.52RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A851UBM4_9PASS9.560e-1844.35RFWD3 ligase (Fragment) n=2 Tax=Passeriformes TaxI... [more]
A0A267GDQ9_9PLAT1.360e-1743.86RING-type domain-containing protein n=1 Tax=Macros... [more]
UPI00193A6C011.770e-1746.15E3 ubiquitin-protein ligase RFWD3-like n=1 Tax=Sty... [more]
A0A7K5DY35_POLCE2.940e-1744.35RFWD3 ligase (Fragment) n=1 Tax=Polioptila caerule... [more]
A0A1I8IIU3_9PLAT3.890e-1743.86RING-type domain-containing protein n=1 Tax=Macros... [more]
A0A7R5KIL2_9PASS5.320e-1744.35E3 ubiquitin-protein ligase RFWD3 isoform X1 n=4 T... [more]
A0A851CAX2_CALVR5.440e-1743.48RFWD3 ligase (Fragment) n=1 Tax=Calyptomena viridi... [more]
A0A8D2NUR9_ZOSLA5.620e-1744.35Ring finger and WD repeat domain 3 n=2 Tax=Passeri... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 187..221
NoneNo IPR availablePANTHERPTHR16047:SF7E3 UBIQUITIN-PROTEIN LIGASE RFWD3coord: 96..669
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 111..166
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 117..159
e-value: 6.0E-5
score: 32.4
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 116..159
e-value: 1.8E-10
score: 41.0
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 117..159
score: 11.707
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 546..685
e-value: 3.1E-9
score: 38.3
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 111..226
e-value: 8.9E-15
score: 57.0
IPR037381E3 ubiquitin-protein ligase RFWD3PANTHERPTHR16047RFWD3 PROTEINcoord: 96..669
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 546..678

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig97contigC-linearis_contig97:366823..371809 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig97.17098.1mRNA_C-linearis_contig97.17098.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig97 366543..371809 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig97.17098.1 ID=prot_C-linearis_contig97.17098.1|Name=mRNA_C-linearis_contig97.17098.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=690bp
MVSSPSSVIDLTCRGREGEAAATDRAPAADVHTDMAAASGAITGTPRQAP
REEVSAAEEESSMVRGVGPLRDSTNTSAAALASDGDDADAAGSAPVRRKK
RKAQAPPPPPKSDGERCSICLDEWTSKGKHRICTLLCGHLFGKSCIERWL
KERRSCPQCGAKVGTKGSNRVIPLFVQNLVAKDTGELETARTCLEEEKRL
RKQCEAERVRLSIENASLKDQLSRQGMSTMGKTPNPNPAGGGGGGHGGGY
RFKPARVAYASTPSTCTTAMLGAGPGVGSPSVVAAYPAFAQTQRQRQGQG
AGPPLPVSSPSPGHFTAPGGTGTMSSPSPSPSWRTRFRRRQDPAQAQGSP
TSGSGGLTGATPPGQPISSTQGGIPLLSSGAGPTGLCDHSSSSNNSNSTE
APRQTSSPRQTQGQTQSLPIPLSLGSGIADSRRDRTAEILLPMSFGPRDA
GSASASARAASPGRAAHSHHNPSPRDFRGSTGGGCGSGGGSTAKAAAASV
RRVTVRSEHLLSRNVQAGRVVAFAGGAAGALLVSQEFGERWPQHGITKFS
LADLRHHKNIHLHREQIRDIKFSVEGGNVSYILSTGFDKTLKVCDLRTDT
VIVSYDLEGNGWSCQWSATNPTQMFCGVVDEARVSAVQLFDLRSTAGAVR
KLRATARQRQPIHSICHTADDLLLCAAMGGVWAWGGGTKG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR013083Znf_RING/FYVE/PHD
IPR037381RFWD3
IPR036322WD40_repeat_dom_sf