mRNA_C-linearis_contig97.17094.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig97.17094.1 vs. uniprot
Match: A0A6H5K9L5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9L5_9PHAE) HSP 1 Score: 246 bits (627), Expect = 1.300e-72 Identity = 187/405 (46.17%), Postives = 215/405 (53.09%), Query Frame = 3
Query: 87 DFDDGEFEIFDEATSKKIQDEHEKDMSDAAKAIGARRMGLITG-DSEKSTATP---------SAAGTGLMSKLASATSLFSRKKTPAPAPAA---------AHXXXXXXXXXXXXXXXXXXXXNSAQPSKSPLPPPPSRVAGEGKPEAGAPTSTNDKEGDWRPPQEPTTVQEAVTAXXXXXXXXXXXXXXXXXXXXXXXXXAAAPAAQTPAGTEIAEQTATGPSKSEDKVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAVLPELKVVTFEVREPSLGAAVVGHVAILEGSCYVWAGTEGSSAQGSLAAAVGTRFDGGVPTATPLLAGEGAGEAGAAGGVSLSMAQRLCRRTGRVVFVSCDLSEDSQILVAAVEAKVVVLLKAND 1244
D D G+ +IFD ATSKKI +EH++DM DAAKAIG R M LI G + + TAT S G L+ KL ATS FSRKKTPAP PAA A N+ S + L PPP+ VA G PE APT T P +EP+ + PA++T A E E ++ + VE EAVLPELK+V+F+VREP+LGA+VVGHV +L GSCYVWA TEGS AQGSLAAAVGTRFDGG+PTATPLLAGEGAGEAG GGV +SMAQRLC+RTGRVVFVSCDLSEDSQILVAAVEAKVV LLKA D
Sbjct: 12 DTDVGDIDIFDAATSKKIHEEHQRDMEDAAKAIGPRGMALIRGLERQTMTATTRITQSLTAGSLHGGRLLRKLTPATSFFSRKKTPAPTPAAEPVAGPKPAAAPAPTAPTLEQLLLAELHMATNAQSSSNATLEPPPT-VAESGSPETAAPTET--------PSEEPSAADDVDVGRKPPPV----------------------PASETAAAGEP-EPARRLDAEGKGSVETARFTSRESAEPAPSPPAAAPTEDAGS--------------------EAVLPELKIVSFDVREPTLGASVVGHVVVLAGSCYVWATTEGSVAQGSLAAAVGTRFDGGMPTATPLLAGEGAGEAGE-GGVGVSMAQRLCKRTGRVVFVSCDLSEDSQILVAAVEAKVVALLKAED 363
BLAST of mRNA_C-linearis_contig97.17094.1 vs. uniprot
Match: D7G2Q5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Q5_ECTSI) HSP 1 Score: 244 bits (624), Expect = 3.110e-72 Identity = 196/399 (49.12%), Postives = 222/399 (55.64%), Query Frame = 3
Query: 99 GEFEIFDEATSKKIQDEHEKDMSDAAKAIGARRMGLITG-DSEKSTATP---------SAAGTGLMSKLASATSLFSRKKTPAPAPAAAHXXXXXXXXXXXXXXXXXXXX-------NSAQPSKSPLPPPPSRVAGEGKPEAGAPTSTNDKEGDWRPPQEPTTVQEAVTAXXXXXXXXXXXXXXXXXXXXXXXXXAAAPAAQTPAGTEIAEQTATGPSKSEDKVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAVLPELKVVTFEVREPSLGAAVVGHVAILEGSCYVWAGTEGSSAQGSLAAAVGTRFDGGVPTATPLLAGEGAGEAGAAGGVSLSMAQRLCRRTGRVVFVSCDLSEDSQILVAAVEAKVVVLLKAND 1244
G+ +IFD ATSKKI +EH++DM DAAKAIG R M LI G + + +TAT S G L+ KLA ATSLFSRKK PAP PAA +AQPS + P VA G PE APT T P+EP + XXXXXXXXXXXXXX PA + A + + + A S+ EAVLPELKVV+F+VREP+LGA+VVGHV +L GSCYVWA TEGS AQGSLAAAVGTRFDGG+PTATPLLAGEGAGEAG GGV +SMAQRLC+RTGRVVFVSCDLSEDSQILVAAVEAKVV LLKA D
Sbjct: 2 GDIDIFDAATSKKIHEEHQRDMEDAAKAIGPRGMALIRGLEKQTTTATTRITQSLTAGSLHGGRLLRKLAPATSLFSRKKPPAPTPAAEPLAGSEPAAQAPTAPTLEQLLLAEIHMATNAQPSSAATLELPPAVAESGSPETAAPTETT--------PEEPPAADDVGDVGRKPPPVPASXXXXXXXXXXXXXXGEPEPARRLKAEGKGSVEPARSASRE---------------------------------PAEPAPSPPAAAPTKDAGSEAVLPELKVVSFDVREPTLGASVVGHVVVLAGSCYVWAATEGSVAQGSLAAAVGTRFDGGMPTATPLLAGEGAGEAGG-GGVGVSMAQRLCKRTGRVVFVSCDLSEDSQILVAAVEAKVVALLKAED 358
BLAST of mRNA_C-linearis_contig97.17094.1 vs. uniprot
Match: A0A485KKL7_9STRA (Aste57867_8572 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KKL7_9STRA) HSP 1 Score: 67.0 bits (162), Expect = 1.170e-9 Identity = 43/100 (43.00%), Postives = 59/100 (59.00%), Query Frame = 3
Query: 948 ILEGSCYVWAGTEGSSAQ-GSLAAAVGTRFDGGVPTATPLLAGEGAGEAGAAGGVSLSMAQRLCRRTGRVVFVSCDLSEDSQILVAAVEAKVVVLLKAND 1244
+L +C+VW G +GS A+ GS++ AV TR+D +P A+ L+ G G V MAQRL RTG+ VFVSC+L ED L A VE ++V L+
Sbjct: 41 LLPNACFVWIGLDGSPARMGSMSTAVKTRYDP-LPLASSLIGGSG-------DEVEQQMAQRLVLRTGKQVFVSCNLPEDDMELCAFVERQIVARLREEQ 132
BLAST of mRNA_C-linearis_contig97.17094.1 vs. uniprot
Match: W4FSB2_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FSB2_9STRA) HSP 1 Score: 55.1 bits (131), Expect = 1.660e-5 Identity = 39/97 (40.21%), Postives = 54/97 (55.67%), Query Frame = 3
Query: 948 ILEGSCYVWAGTEGSSA-QGSLAAAVGTRFDGGVPTATPLLAGEGAGEAGAAGGVSLSMAQRLCRRTGRVVFVSCDLSEDSQILVAAVEAKVVVLLK 1235
+L +C+VW G + + GS++ AV TR+D +P A+ LL G A MAQRL RTG+ VFVSC+L ED L A VE ++ L+
Sbjct: 41 LLAHACFVWVGLDETPVCMGSMSTAVKTRYDP-LPLASSLLGG-------GADDTEQQMAQRLVLRTGKQVFVSCNLPEDDMELGAYVERAILQRLR 129
BLAST of mRNA_C-linearis_contig97.17094.1 vs. uniprot
Match: A0A6G0WHC5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WHC5_9STRA) HSP 1 Score: 53.9 bits (128), Expect = 3.520e-5 Identity = 36/100 (36.00%), Postives = 54/100 (54.00%), Query Frame = 3
Query: 948 ILEGSCYVWAGTEGSSAQ-GSLAAAVGTRFDGGVPTATPLLAGEGAGEAGAAGGVSLSMAQRLCRRTGRVVFVSCDLSEDSQILVAAVEAKVVVLLKAND 1244
+L +C+VW G + ++ GS++ AV T++D +P A+ L+ G E MAQRL RTGR VFVSC+L +D L A +E ++ L
Sbjct: 36 LLANACFVWIGLDSTAVSLGSMSTAVKTKYDP-LPLASSLIGGGNEMEQ--------QMAQRLVLRTGRQVFVSCNLPDDDMELGAFIERAIIKRLNQES 126 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig97.17094.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig97.17094.1 >prot_C-linearis_contig97.17094.1 ID=prot_C-linearis_contig97.17094.1|Name=mRNA_C-linearis_contig97.17094.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=388bp MDFDDGEFEIFDEATSKKIQDEHEKDMSDAAKAIGARRMGLITGDSEKSTback to top mRNA from alignment at C-linearis_contig97:353750..356287- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig97.17094.1 ID=mRNA_C-linearis_contig97.17094.1|Name=mRNA_C-linearis_contig97.17094.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2538bp|location=Sequence derived from alignment at C-linearis_contig97:353750..356287- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig97:353750..356287- >mRNA_C-linearis_contig97.17094.1 ID=mRNA_C-linearis_contig97.17094.1|Name=mRNA_C-linearis_contig97.17094.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2328bp|location=Sequence derived from alignment at C-linearis_contig97:353750..356287- (Chordaria linearis ClinC8C monoicous)back to top |