mRNA_C-linearis_contig97.17092.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig97.17092.1
Unique NamemRNA_C-linearis_contig97.17092.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig97.17092.1 vs. uniprot
Match: A0A6H5K116_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K116_9PHAE)

HSP 1 Score: 396 bits (1017), Expect = 2.260e-126
Identity = 222/284 (78.17%), Postives = 235/284 (82.75%), Query Frame = 3 
Query: 1413 GVVGDLPHQVSELYADMERNLMSRMHAQDKNRFRAVGLSTMLLLIWVLSMFGTEIRRYFASQTAEVARETLKVEALQVQTQELATALVQALLNDQEVVSAGALFLREASANPETQAALVSLALYVLQHPGTLAETRVLAKKLVRSILDDPDSVQQVXXXXXXVIRTPRFRKGATELVVALGQSEEVYAAVTALASRVIQDPEVQATLSSVLSASSREVLRDQVVFDRSKVFVAQVMGDDAVQRSGGDALWNTVQYALQTRLFKATGLCLLAAGSAVFFSGRGGG 2264
            GVVGDLP+QVSELYA+MERNLMSRMHAQDKNRFRAVGLS++L+LIWVLSMFGTEIRRYFASQTAEVARETLKVEALQVQTQELATALVQALLNDQEVV AGALFLREASAN ETQAALVSLALYVLQHP T A                     QV      VIR P+FR+GA+ELVVALGQSEEVY A             VQATLS+VLSASSREVL+DQVVFD SKVFVAQVMGDDAVQRSGGDALW++VQYALQTRLFKATG+CLLAAGSAV  SGRGGG
Sbjct:  214 GVVGDLPYQVSELYAEMERNLMSRMHAQDKNRFRAVGLSSLLILIWVLSMFGTEIRRYFASQTAEVARETLKVEALQVQTQELATALVQALLNDQEVVRAGALFLREASANSETQAALVSLALYVLQHPDTRAXXXXXXXXXXXXXXXXXXXXXQVTDMALKVIRNPQFRQGASELVVALGQSEEVYGAXXXXXXXXXXXXXVQATLSTVLSASSREVLQDQVVFDHSKVFVAQVMGDDAVQRSGGDALWSSVQYALQTRLFKATGICLLAAGSAVLLSGRGGG 497
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BLAST of mRNA_C-linearis_contig97.17092.1 vs. uniprot
Match: D7FTZ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTZ2_ECTSI)

HSP 1 Score: 237 bits (604), Expect = 1.890e-69
Identity = 133/159 (83.65%), Postives = 145/159 (91.19%), Query Frame = 3 
Query: 1641 QVQTQELATALVQALLNDQEVVSAGALFLREASANPETQAALVSLALYVLQHPGTLAETRVLAKKLVRSILDDPDSVQQVXXXXXXVIRTPRFRKGATELVVALGQSEEVYAAVTALASRVIQDPEVQATLSSVLSASSREVLRDQVVFDRSKVFVAQV 2117
            QVQTQELATALVQALLNDQEVV AGALFLREASANPETQAALVSLALYVLQHP T AET+VLAKKL+++ILDDPD+V QV      VIRTP+FR+GA+ELVVALGQS+EVY AV  LASRVIQDP+VQATLS+VLSASSREVL+DQVVFD SKVFVAQV
Sbjct:   15 QVQTQELATALVQALLNDQEVVRAGALFLREASANPETQAALVSLALYVLQHPDTRAETKVLAKKLIKAILDDPDTVLQVTDMVLKVIRTPQFRQGASELVVALGQSQEVYGAVVDLASRVIQDPKVQATLSTVLSASSREVLQDQVVFDHSKVFVAQV 173
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BLAST of mRNA_C-linearis_contig97.17092.1 vs. uniprot
Match: A0A835YV69_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV69_9STRA)

HSP 1 Score: 213 bits (541), Expect = 5.470e-60
Identity = 123/270 (45.56%), Postives = 174/270 (64.44%), Query Frame = 3 
Query: 1449 LYADMERNLMSRMHAQDKNRFRAVGLSTMLLLIWVLSMFGTEIRRYFASQTAEVARETLKVEALQVQTQELATALVQALLNDQEVVSAGALFLREASANPETQAALVSLALYVLQHPGTLAETRVLAKKLVRSILDDPDSVQQVXXXXXXVIRTPRFRKGATELVVALGQSEEVYAAVTALASRVIQDPEVQATLSSVLSASSREVLRDQVVFDRSKVFVAQVMGDDAVQRSGGDALWNTVQYALQTRLFKATGLCLLAAGSAVFFSGRG 2258
            +Y+DME  LM+RM   +K RFR   + T+L +IWV + FG EIR +   QTAEVARETLK EA+Q+QTQELA A+V  LLND +V++A ++FL++A+++P+TQAA+VSLA +VLQHP TL E   LA+KL+  ++ +  +  +       +  T         L   L   + VY A   + SR+I +P V+  +S +++  S  VL D  V    K FVA+VMGDD VQ++GGDALW++VQYAL+ RL    GL +  AG+   F+GRG
Sbjct:    1 MYSDMEAKLMARMRTHNKGRFRTAAIVTVLTVIWVFNTFGKEIRVWMGGQTAEVARETLKHEAIQIQTQELAMAVVNTLLNDPKVLAATSVFLQDAASDPDTQAAIVSLASHVLQHPDTLQEVHALAQKLIAQLVKEAAATLRTCTVLASLKHT--------HLKCIL---DHVYEAFLDMVSRIIAEPRVKEQVSLIMADGSHHVLADADVLQHGKDFVAEVMGDDQVQKTGGDALWHSVQYALRWRLMVVAGLSMACAGA--IFAGRG 257
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BLAST of mRNA_C-linearis_contig97.17092.1 vs. uniprot
Match: A0A7S3UXV6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UXV6_HETAK)

HSP 1 Score: 193 bits (490), Expect = 2.750e-51
Identity = 104/260 (40.00%), Postives = 157/260 (60.38%), Query Frame = 3 
Query: 1464 ERNLMSRMHAQDKNRFRAVGLSTMLLLIWVLSMFGTEIRRYFASQTAEVARETLKVEALQVQTQELATALVQALLNDQEVVSAGALFLREASANPETQAALVSLALYVLQHPGTLAETRVLAKKLVRSILDDPDSVQQVXXXXXXVIRTPRFRKGATELVVALGQSEEVYAAVTALASRVIQDPEVQATLSSVLSASSREVLRDQVVFDRSKVFVAQVMGDDAVQRSGGDALWNTVQYALQTRLFKATGLCLLAAGSAVF 2243
            E  LM R+H  ++NRFR   L T+L   W+ + FG EI  +F  QTAEVA+ETL+ E+LQ+QTQELATA+VQ LLND +V+    +FL+EA+ N ET+ ALV L L++LQH  T+ E   L +K+V  +  +P  +  +      V++  R ++ A++LV  L ++E+VY AV  L +RV+               +S  VL D  V   SK F+++V  D+ +Q++G  ALW+TV+Y++Q  L +  G  L+    A+F
Sbjct:  113 EEYLMKRIHIGNQNRFRTAVLGTILTCCWLTATFGQEIYSFFTKQTAEVAKETLRQESLQIQTQELATAIVQTLLNDDQVMKNATIFLKEAAGNEETKKALVGLGLFILQHEETMREAVELGRKIVVQLSKEPSVINNIALLMLEVLKDKRVQESASDLVADLSENEQVYEAVVQLTNRVLSXXXXXXXXXXXXXEASISVLSDDTVISHSKEFISEVANDEEIQKAGSKALWHTVKYSVQPHLKRIVGAALVGTSIALF 372
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BLAST of mRNA_C-linearis_contig97.17092.1 vs. uniprot
Match: A0A7R9YAX6_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YAX6_9STRA)

HSP 1 Score: 158 bits (400), Expect = 1.780e-39
Identity = 99/262 (37.79%), Postives = 152/262 (58.02%), Query Frame = 3 
Query: 1425 DLPHQVSELYADMERNLMSRMHAQDKNRFRAVGLSTMLLLIWVLSMFGTEIRRYFASQTAEVARETLKVEALQVQTQELATALVQALLNDQEVVSAGALFLREASANPETQAALVSLALYVLQHPGTLAETRVLAKKLVRSILDDPDSVQQVXXXXXXVIRTPRFRKGATELVVALGQSEEVYAAVTALASRVIQDPEVQATLSSVLSASSREVLRDQVVFDRSKVFVAQVMGDDAVQRSGGDALWNTVQYALQTRLFKATG 2210
            ++  +V + Y ++E  LM    A +  + R    +  L+ +WV S+FG  IRR+F+ QTAEVARETL+ E LQ +TQELA A+V+ +LND++++     F+R  + +   + ALV LAL++LQH  TLAE +VL  KLV  IL D     +           P  R    +L+V L Q++EV  AV AL + V  +P  ++ L  +L A++  V+ D+ V   +K FV +V+ D  VQR+GG +L  +V Y+L+  L +  G
Sbjct:   43 EVSQRVVDNYKEIEARLMRTTRASNVEQIRLALTAAALVTVWVFSVFGRHIRRFFSKQTAEVARETLENEELQARTQELAAAVVRTILNDEDILVKITAFIRNTADDDNLRDALVQLALHILQHDDTLAEVKVLGLKLVDYILKDETVTIEAGALVQRTWNLPEVRTATLDLLVDLLQTQEVNQAVLALLTSVADEPVFKSKLQELLIAATHGVVIDKGVHTAAKDFVHEVVTDTDVQRTGGRSLRASVWYSLEPVLARVAG 304
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BLAST of mRNA_C-linearis_contig97.17092.1 vs. uniprot
Match: A0A7S2GHN5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GHN5_9STRA)

HSP 1 Score: 130 bits (327), Expect = 2.740e-29
Identity = 80/220 (36.36%), Postives = 126/220 (57.27%), Query Frame = 3 
Query: 1560 MFGTEIRRYFASQTAEVARETLKVEALQVQTQELATALVQALLNDQEVVSAGALFLREASANPETQAALVSLALYVLQHPGTLAETRVLAKKLVRSILDDPDSVQQVXXXXXXVIRTPRFRKGATELVVALGQSEEVYAAVTALASRVIQDPEVQATLSSVLSASSREVLRDQVVFDRSKVFVAQVMGDDAVQRSGGDALWNTVQYALQTRLFKATGLCL 2219
            MF   I  +F  +TAEVAR+ LK E LQ QT ELA A VQ++L D EV +    FLRE +++ ET+ A+V L++ VL+ P  L +   L K++  +++ DPD++ ++       +   + +    EL+  L Q E V  +V AL  R+  + ++Q  L+ ++  SS  VL D  +   S+ FV++V+ D  VQR+GG ALW +V Y+++    K  G  L
Sbjct:  130 MFSDTILSFFGRETAEVARQVLKNEGLQDQTLELANAAVQSVLRDPEVRARALAFLRETASSEETRRAMVRLSVQVLKDPLVLEDAAALGKEVWLNLIRDPDTMDELVSVLKQALLHAQTQTAVIELIGRLCQDETVQGSVQALFHRLFLEADIQEALNEMMINSSHAVLDDASIARESRRFVSEVVSDAEVQRTGGQALWQSVVYSVEPTTRKVLGFAL 349
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BLAST of mRNA_C-linearis_contig97.17092.1 vs. uniprot
Match: A0A485KNS4_9STRA (Aste57867_9680 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KNS4_9STRA)

HSP 1 Score: 127 bits (319), Expect = 2.710e-28
Identity = 83/231 (35.93%), Postives = 128/231 (55.41%), Query Frame = 3 
Query: 1485 MHAQDKNRFRAVGLSTMLLLIWVLSMFGTEIRRYFASQTAEVARETLKVEALQVQTQELATALVQALLNDQEVVSAGALFLREASANPETQAALVSLALYVLQHPGTLAETRVLAKKLVRSILDDPDSVQQVXXXXXXVIRTPRFRKGATELVVALGQSEEVYAAVTALASRVIQDPEVQATLSSVLSASSREVLRDQVVFDRSKVFVAQVMGDDAVQRSGGDALWNTVQY 2177
            M+ Q KN +   GL  + + ++ +  FG E+R      TAEVA ETL+ E+LQ+QTQELA+ +VQ +LND +V+     FL++  A   T  ALV L   VL  P TLA    LAK+L+ ++  DP +++Q        I  P  R+    L+  L Q E   A +T L +      +VQ ++++ ++ S  +V+ +Q V D +K F+  V+ D+ VQ   G+ALW T+ Y
Sbjct:   84 MNMQGKN-WNMWGLGIIGVGVFXMIAFGPEMRSKMTKTTAEVATETLQNESLQIQTQELASQIVQTVLNDPKVLDQACHFLKKLFAMEMTHVALVQLTSGVLNDPQTLAHVTKLAKQLLFNLFQDPTTLRQFVDLIKTAIVDPNTRESVIALLDQLMQDEATRARLTKLMAWTFVQDQVQGSVTTTITKSVHQVMSNQDVQDHAKEFIGGVVRDETVQTQSGEALWKTLLY 313
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BLAST of mRNA_C-linearis_contig97.17092.1 vs. uniprot
Match: A0A7S3HRC0_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HRC0_9STRA)

HSP 1 Score: 115 bits (289), Expect = 7.010e-26
Identity = 65/183 (35.52%), Postives = 110/183 (60.11%), Query Frame = 3 
Query: 1674 VQALLNDQEVVSAGALFLREASANPETQAALVSLALYVLQHPGTLAETRVLAKKLVRSILDDPDSVQQVXXXXXXVIRTPRFRKGATELVVALGQSEEVYAAVTALASRVIQDPEVQATLSSVLSASSREVLRDQVVFDRSKVFVAQVMGDDAVQRSGGDALWNTVQYALQTRLFKATGLCLL 2222
            VQ +L D+++ +  A FL+EAS  PETQ AL+ L +++LQH  TL E   +++KL              XXX   V++ P  R     L+  L Q +EV+ +V+ L  ++  +P+V  + S++L+ S  +++ D  +  +S+ F+A V+GDD +Q+ GG ALWN++QYAL+  + + TG+ L+
Sbjct:    1 VQTILEDKDITNHAATFLKEASTAPETQQALLKLTMHILQHKDTLEELTKMSQKLXXXXXXXXXXXXXXXXXFTKVLQDPALRTAMVTLIGDLCQDKEVFESVSGLVVQLAGEPKVTESTSALLTGSISDLMHDDEISHQSRQFIADVVGDDLLQKEGGYALWNSIQYALKPGIIRVTGVTLV 183
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BLAST of mRNA_C-linearis_contig97.17092.1 vs. uniprot
Match: A0A024UV14_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UV14_9STRA)

HSP 1 Score: 119 bits (298), Expect = 1.410e-25
Identity = 75/221 (33.94%), Postives = 121/221 (54.75%), Query Frame = 3 
Query: 1521 GLSTMLLLIWVLSMFGTEIRRYFASQTAEVARETLKVEALQVQTQELATALVQALLNDQEVVSAGALFLREASANPETQAALVSLALYVLQHPGTLAETRVLAKKLVRSILDDPDSVQQVXXXXXXVIRTPRFRKGATELVVALGQSEEVYAAVTALASRVIQDPEVQATLSSVLSASSREVLRDQVVFDRSKVFVAQVMGDDAVQRSGGDALWNTVQYAL 2183
            GL  + +    +  FG E+R      TAEVA ETL+ E+LQ+QTQELA+ +VQ +LND +V+   + FL++  A   T+ A+V L         TLA    L+K+++ ++  DP +++Q        I  P  R+    L+  L + E   A +TAL +     P VQ ++S+ +++S   V+ ++ V D +K F+  V+ D+ VQ   G+ALW T+ Y L
Sbjct:   82 GLGLLGVXXXXVIAFGPEMRSKMTKTTAEVATETLQNESLQIQTQELASQIVQTVLNDPKVLDQASQFLQKLMAMDATRGAMVQLXXXXXXXXXTLAHVTKLSKQILFNLFQDPATLRQFVDLIKAAIVDPHTRQNVILLLDQLMKDEPTRARLTALLAWTFVQPPVQHSVSATMTSSVHNVMSNKDVQDHAKEFIGGVVRDETVQTQSGEALWKTLMYVL 302
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BLAST of mRNA_C-linearis_contig97.17092.1 vs. uniprot
Match: A0A1V9YHQ0_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YHQ0_9STRA)

HSP 1 Score: 114 bits (284), Expect = 1.900e-24
Identity = 81/241 (33.61%), Postives = 131/241 (54.36%), Query Frame = 3 
Query: 1473 LMSRMHAQ-DKNRFRAVGLSTMLLLIWVLSMFGTEIRRYFASQTAEVARETLKVEALQVQTQELATALVQALLNDQEVVSAGALFLREASANPETQAALVSLALYVLQHPGTLAETRVLAKKLVRSILDDPDSVQQVXXXXXXVIRTPRFRKGATELVVALGQSEEVYAAVTALASRVIQDPEVQATLSSVLSASSREVLRDQVVFDRSKVFVAQVMGDDAVQRSGGDALWNTVQYALQTR 2192
            L+SR  A  +K  + A+GL  + L+      F  E++   +  TAEVA ETL+ E LQ+QTQELA+ +VQ +LND +V++    F++  S +  TQ ALV+L   VL +P T+A+   L+K+L+ ++L DP +++Q   XXXX                     E   A +  L S       V+ ++++ L+ S  +V+ +  + D +KVF+  V+ D+ VQ   G+A+WNT+ Y    R
Sbjct:    7 LLSRHKASWNKWGYVALGLGGLCLIA-----FAPELKNSMSKTTAEVASETLQNENLQIQTQELASQIVQTVLNDPKVLNQALQFIKNLSESEITQTALVNLTSNVLNNPQTMAQVTKLSKQLLLNLLQDPTTLRQFVNXXXXXXXXXXXXXXXXXXXXXXXXXENTKARLAHLMSHTFVQEPVKKSVTNTLTNSLHDVMSNPDIQDHAKVFIGGVVRDETVQTQSGEAIWNTMSYVFTPR 242
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig97.17092.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K116_9PHAE2.260e-12678.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTZ2_ECTSI1.890e-6983.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YV69_9STRA5.470e-6045.56Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3UXV6_HETAK2.750e-5140.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7R9YAX6_9STRA1.780e-3937.79Hypothetical protein n=2 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2GHN5_9STRA2.740e-2936.36Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A485KNS4_9STRA2.710e-2835.93Aste57867_9680 protein n=1 Tax=Aphanomyces stellat... [more]
A0A7S3HRC0_9STRA7.010e-2635.52Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A024UV14_9STRA1.410e-2533.94Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A1V9YHQ0_9STRA1.900e-2433.61Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig97contigC-linearis_contig97:345615..351185 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score236.1
Seed ortholog evalue3.6e-59
Seed eggNOG ortholog2880.D7FTZ2
Hectar predicted targeting categoryother localisation
EggNOG OGs2CKXH@1,2SE2H@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-11_003350.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons9
Model size2268
Cds size1521
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig97.17092.1prot_C-linearis_contig97.17092.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig97 345615..350439 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930834.1314278-CDS-C-linearis_contig97:345614..3457671622930834.1314278-CDS-C-linearis_contig97:345614..345767Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 345615..345767 -
1690881273.6646535-CDS-C-linearis_contig97:345614..3457671690881273.6646535-CDS-C-linearis_contig97:345614..345767Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 345615..345767 -
1622930834.160566-CDS-C-linearis_contig97:346139..3461901622930834.160566-CDS-C-linearis_contig97:346139..346190Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 346140..346190 -
1690881273.6821122-CDS-C-linearis_contig97:346139..3461901690881273.6821122-CDS-C-linearis_contig97:346139..346190Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 346140..346190 -
1622930834.176423-CDS-C-linearis_contig97:346335..3464311622930834.176423-CDS-C-linearis_contig97:346335..346431Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 346336..346431 -
1690881273.6923335-CDS-C-linearis_contig97:346335..3464311690881273.6923335-CDS-C-linearis_contig97:346335..346431Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 346336..346431 -
1622930834.2008736-CDS-C-linearis_contig97:346608..3466981622930834.2008736-CDS-C-linearis_contig97:346608..346698Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 346609..346698 -
1690881273.7077308-CDS-C-linearis_contig97:346608..3466981690881273.7077308-CDS-C-linearis_contig97:346608..346698Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 346609..346698 -
1622930834.2183204-CDS-C-linearis_contig97:347194..3473141622930834.2183204-CDS-C-linearis_contig97:347194..347314Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 347195..347314 -
1690881273.716786-CDS-C-linearis_contig97:347194..3473141690881273.716786-CDS-C-linearis_contig97:347194..347314Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 347195..347314 -
1622930834.2332551-CDS-C-linearis_contig97:347964..3480781622930834.2332551-CDS-C-linearis_contig97:347964..348078Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 347965..348078 -
1690881273.7275057-CDS-C-linearis_contig97:347964..3480781690881273.7275057-CDS-C-linearis_contig97:347964..348078Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 347965..348078 -
1622930834.2530491-CDS-C-linearis_contig97:348482..3485811622930834.2530491-CDS-C-linearis_contig97:348482..348581Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 348483..348581 -
1690881273.737352-CDS-C-linearis_contig97:348482..3485811690881273.737352-CDS-C-linearis_contig97:348482..348581Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 348483..348581 -
1622930834.2700212-CDS-C-linearis_contig97:349078..3491641622930834.2700212-CDS-C-linearis_contig97:349078..349164Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 349079..349164 -
1690881273.7495065-CDS-C-linearis_contig97:349078..3491641690881273.7495065-CDS-C-linearis_contig97:349078..349164Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 349079..349164 -
1622930834.2960947-CDS-C-linearis_contig97:349727..3504391622930834.2960947-CDS-C-linearis_contig97:349727..350439Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 349728..350439 -
1690881273.7612429-CDS-C-linearis_contig97:349727..3504391690881273.7612429-CDS-C-linearis_contig97:349727..350439Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 349728..350439 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930834.3497536-UTR-C-linearis_contig97:350439..3511851622930834.3497536-UTR-C-linearis_contig97:350439..351185Chordaria linearis ClinC8C monoicousUTRC-linearis_contig97 350440..351185 -
1690881273.770945-UTR-C-linearis_contig97:350439..3511851690881273.770945-UTR-C-linearis_contig97:350439..351185Chordaria linearis ClinC8C monoicousUTRC-linearis_contig97 350440..351185 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig97.17092.1

>prot_C-linearis_contig97.17092.1 ID=prot_C-linearis_contig97.17092.1|Name=mRNA_C-linearis_contig97.17092.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=507bp
MFRGRLISSRPPCCRHGHGHGHGSLGARERLRLLLLSKKPRGSPMPRQRQ
TRSEMLSRSEEGRGKMCIAAAATAAGPDVTCKKAWSRLASTYSSSNNNSN
SCNGLRRTKGVVGAPRRHADGPPLSLSLASSGERGVAWPRPLFPKPGGAS
GARRAKTDGAHGGGKEGGKGEGGGGGKTISAETSGSDATKKGAGFGGGGK
ALGNGGGADAGAIGGGSGGGGGGVVGDLPHQVSELYADMERNLMSRMHAQ
DKNRFRAVGLSTMLLLIWVLSMFGTEIRRYFASQTAEVARETLKVEALQV
QTQELATALVQALLNDQEVVSAGALFLREASANPETQAALVSLALYVLQH
PGTLAETRVLAKKLVRSILDDPDSVQQVTELALKVIRTPRFRKGATELVV
ALGQSEEVYAAVTALASRVIQDPEVQATLSSVLSASSREVLRDQVVFDRS
KVFVAQVMGDDAVQRSGGDALWNTVQYALQTRLFKATGLCLLAAGSAVFF
SGRGGGR
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mRNA from alignment at C-linearis_contig97:345615..351185-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig97.17092.1 ID=mRNA_C-linearis_contig97.17092.1|Name=mRNA_C-linearis_contig97.17092.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5571bp|location=Sequence derived from alignment at C-linearis_contig97:345615..351185- (Chordaria linearis ClinC8C monoicous)
AAGCGAGAGTGCGTTCAAGTTCGAAGGCCACCCTTGTGCGGTCGCTCCGT
TGCCTTTTTTTTCACGAAAAGTTGTTCCTCGGTGTGCATGAGACACCTGT
GCTTCCACTAATAGTGTGCATATCCAGAGGGTGTGTTTGGGCGAGGTCCC
CTCAATTTCGCGCATTATTTGCAAGAACGATTGTGTGCACGACTACACTA
AAAACTAAAAACCCTGTTCAGGTCGTCAAGTGTGCGTTTTCCTTCTCTTC
GGCGGCGTGAGTGTCCTTCCCCTCCTTTCCTCTCTCGCCTGAATGGTTCA
TCGCTGAACTCTGCCCAATTATGGGTAATGCAGGGCGGCCTAATGTAGCG
TGCTGGTACGCACCAAGCATGGCCACGCGTCTACCTCCAACTACACACAA
CTTCCAGCCAAAAAGCTACCTATAGAAAATAGAAAATGGATTTGTTCGGG
GATGACGAACAAAGCCTCTTCTCTGTCTTTGCGTTCCCTTCTCAACGTAT
TCTCTAAGATATTACTGATATACTTCGTACAAGTTTACAACCAGCAGCAA
CTTGTATAAATTTCTAATTTTCGTCTTTCATTCATGTTTCTGCACCATGC
GCACACCCGAGGGGCTGTTTGTATGCCCCACGTTGTGCTGATGTGGACAT
GCACGTATCGATGTCAAGAGTAGCAATTGTCTGCGTTGAAATATTAAAAA
TAAACTTTGCCGCTCTGGACACCTTGCGACTGATGCTTGATACCTGATGT
TTCGTGGTAGATTGATTTCATCCCGTCCGCCATGTTGTAGGCATGGGCAT
GGGCACGGGCATGGCAGCCTTGGCGCGAGGGAACGGTTGCGTCTGTTGTT
GTTGTCCAAGAAGCCACGGGGCAGCCCCATGCCCCGACAACGACAAACCC
GCAGTGAAATGCTGTCCAGATCAGAGGAGGGCAGGGGGAAAATGTGCATC
GCCGCGGCGGCAACAGCAGCTGGGCCAGATGTCACCTGCAAGAAAGCATG
GTCGCGACTAGCTTCGACCTACAGCAGCAGCAACAACAACAGCAACAGTT
GCAATGGCTTGCGCCGAACCAAAGGTGTCGTTGGCGCTCCAAGAAGGCAT
GCGGATGGACCGCCGCTCTCTCTATCGCTGGCAAGCAGCGGAGAACGAGG
GGTGGCGTGGCCACGCCCGCTTTTCCCTAAGCCAGGCGGGGCCAGCGGTG
CTAGACGAGCGAAGACCGATGGAGCGCATGGCGGAGGAAAAGAGGGCGGG
AAAGGGGAAGGGGGAGGGGGAGGAAAGACGATAAGCGCAGAGACATCGGG
GAGCGATGCCACGAAGAAAGGAGCAGGGTTTGGAGGTGGAGGGAAAGCGC
TGGGCAACGGTGGAGGGGCCGATGCCGGTGCCATAGGTGGAGGATCTGGA
GGGGGAGGGGGAGGGGTTGTCGGTGACCTGCCGCATCAAGTGTCAGAACT
CTATGCCGGTAAGTGCATACCGTGGCGTAAGGTTGATGAAATGTGTTGGG
TGTGTTGTGCGGCCGCCGTTGACTTAGGGGTGTGATCGTTTGATCGCCTT
GACGTTGTGGGTGCAAACTGTGGCTTACAACATATAGTAGAGCCTACAAC
ATACGGAAGACATAGGGCGAAGGAGTGCCGTTACTACCTGTTGCACGTTA
CCAGCGTTACGTTTGTGTTTTTGCCGTTGCTGGCCGTAACAGCAGTAGTC
GCACGTCACAGATGTCTTTTGTCTGATTTTTTCTTCTTTTCGGCGGAAGG
CTGAGGGTTCAATGGTGGTATCTCTGTTTTTTGGCATGTTTTGATTCGTC
TATGCATTGCATTCTCTTTCTCTTTCTCGTTGGCGTTCTCGTTCTCGTTC
TCGTTTTTGTGTTATCTTACCGAATTGCAACCATCCCTGTGCCGCAGTGC
GGAATGATGATGATCATGATGGTGATCATGATATTGATTAGTAGGCTGAT
TGGGCCTCTTTTAACTTTTAACCTGATCTGGATCTCCTATTTTATTTTCC
TCTCACTTGCCTCACTCGCAGACATGGAGCGTAATCTAATGTCGCGGATG
CACGCGCAGGACAAGAACAGGTTCCGTGCTGTTGGCCTGTCCACCATGCT
GCTGCTGGTGAGTGATTTGGGTAGGGAGAGGAGCAGCGAGCAAGCGTCTC
CTGGTGTTTTTTCGTGAGGAGAGGAACACCACCCTCATCAGAAGGCTCTC
ATTTGACCTGCCCCATAAATTAGCGCATGCTTGTACATGCCTTTGCTTTT
GCTCGCACTCACGTACACTACGGCCGATACGGAGGTTTTTCCGGGATAAA
TATGTACAGAAGTAGTCTGCATCACATGGCAGACGCCGGCCCGACGACGC
GCCTCTGGGGTGGGTTGGTTCACTAAAACTTTAAGATATTCACGTCAAAA
TGAGCCCTTCAAGCCGGTGCGTAGAGACTTGTAGAGTGTTGCTTCCATCC
CTTGCCGAACCACGGCAAAGAGGTGGTTGGTTTGATGAACCGATCCCTTT
TTTCTGCTTTTTTCATTTCTGCTATCCATATCTGGGCGTGAACTGAGCCT
GACTCAGCCCCGCCCACGTATCGTTGGTTGTCTCTTTCGTTTCAATGTTT
CAAGATTTGGGTGCTGAGCATGTTTGGGACGGAAATTCGGCGTTACTTTG
CGAGCCAAACGGCGGAGGTGGCGAGGGAAACGCTCAAGGTCGAAGCGCTG
CAGGTGAGGCGAAGTGAAGGGGATCCCACCGCAGGACGAGTTCAACACAT
GTGGCGTGGGGGGTTTTCTTATCAAGACCCTTGTGTGGCCACGAGACATC
CACGCGGCTGTCTTCGCCTGTTTTGGAGTACCTTCCGCTGAAGCAAAAGG
AACCCTTACTCCACAGTTTCGTGCCTTCTGGCGTTGATTTGATTCGGGCC
GGGATGATGGATTGGTAGGCTATCTGCTGCTGTCGAGAGTGGGGCTGATG
TTACCCGGCCACGCAGCTCTAGAGCACGGGATGCGACAGCTGCAGCCAAG
CCACGACGACAGCTGAAGATCGTTGACAAACGATTCGTTTTTTTTTTCCT
TCTTTTTTTCCCGGTTTGTCTGACTGGCCACACGTGTATGACACCCCCCC
ATGACAGGTTCAGACGCAAGAGCTGGCGACGGCATTGGTGCAGGCCCTGC
TCAACGACCAAGAGGTTGTGAGTGCCGGCGCGCTCTTCCTAAGAGAGGCG
TCTGCCAACCCGGAGACCCAGGTGGGGCATCTTGCGCCAAGTCCAACCGT
AGTCTTGAAAAGCAAGAGCTTGGAAGCTTTTCAAGACTACGGTTGTGCTG
GACGATTTCCCCGGATCATTTTTCTTCGCCGCCGTGATTCAAGCTGTGCC
TGCTGGAAGAACTCTCACATACTTGTAGCGTTTTCTTTGGAATGCTACTT
CGTTTCGGCGCAGCCTTTGAGCTTCCGACTACCGTAGGTGTTGGAGCGAT
GGCACACCTGTGCGATCGTTTTCATAGCTTGATTTCTCCTCAACCAGGAG
GGTATCACTGCCGAAAAGGAAGGGTGGTTTTGGAAAGATCTACGTAGATC
TTGTCGAGAGCTTTCGTATGACGGGTCGTTTGGTGTTCGCACCCTCCTGG
TTGTTGTGGAGAAATCAAGCTTTGAAAAGCGATCGCACAGGTCTGCCATC
GCTCCAACACTTACGGTATCAATGTGTACAACACGATATGTTGTCGCCCT
CCGTCGAAACAAGAAACATAAAAGATCCAAACCGGGTGCGCTTCTGTTTC
CTCTCGTACATACAATCACACAATACACACAGTTCAGCAGCACAAGGTTT
CAATGAATGCCGTCGGTGAACAAACCCACCCCCCCTTGCTTCCGCTTCTT
GCTTGTTGCTTGTTGTGCCAGGCCGCGCTTGTCAGCCTTGCGCTCTACGT
CCTCCAGCACCCTGGAACGCTCGCCGAAACCCGAGTGCTGGCCAAGAAGC
TGGTCCGCTCCATCCTGGATGACCCGGACTCAGTGCAGCAGGTTTGCGAA
CGTGTGCTGTTAAAGCTGTTGGTGGTGCTATGCTTGTACTTCGAAGTATA
CTCGACGACTCCGTTGTGGAATTTAGGCACCAGACAGCTGTCGGTGGTGT
TGCTGCGGCTGCTTGGAGCCTGGTTTTTTGTTTTTCTTGTCGAAACGCGC
ATGCGCTGATTTACCCAAAGGCTAGAACGCCGATGGTGCTTGGTTCACTC
ACTGCTGCTGTAGCATTGGCACAGGCTCTCACGATGTCCGTGTGTCGTGT
GCATACGTCTTCCCGTCTTGTGGCGCGTGGATGGGATGATTTTGGTATCC
GAGCTGCGAAACTGCTTCGACAGCACCACCCGCGAGTCGTGTGCATGCCA
GGAGCGAGGGTACATGTCGTCTACCCGCGTGTTTGTCTGTGAGCCTGTCA
TCCGTGTTGCCATCCGTGTTGTGCTGAAAACTTCAGTGTTGCGAACCCTC
TGTGCCCAAAAGCTCGATTTGCGATTTTTCTCATCAGGTTACCGAGCTAG
CGTTAAAGGTGATCAGGACCCCGCGCTTCCGAAAGGGTGCCACGGAGCTC
GTCGTAGCGCTCGGCCAAAGCGAAGAGGTCAGTAGCCTGTGTGGGTGCCG
ATAGGTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AAAGCTTACGTGAGCCCTCCTACAATCCTGTATCCTGCGTTTGCTTTAGC
CTCTCAACCGTAACCTTCTTGCTCTGCTCCTGACGCCGCTGTCTTTTCCT
TCAGGTGTACGCTGCCGTGACCGCTCTCGCTTCGAGGGTCATTCAGGATC
CAGAAGTGCAGGCTACCCTTAGTTCCGTGCTCTCGGCGTCTTCGCGTGAG
GTGTGTATGTTACCCTGAAGTGAACCTGTTGTGGTGTTAGATGGATCTAA
GCGGTGGATCTATCTGTTTTCTTGAAAGTATCCATATTCTGGTGTTTCCA
TTTATCTGTCTTGATAACCTCTCTGTCTGTCTTGTATTTTGTCAGGTTTT
GCGGGATCAGGTGGTGTTCGACCGCTCCAAGGTGTTTGTCGCTCAGGTGA
GATGAGAAGCATGCACACATACCAGGGAGACAAGGAGACAAGCAGGCAGG
CCGGTACTTGGTGTGATACGGCGCAACAAGCAGTATTTAGAACAGTATCT
TCATTCGCGATGCCGCCATACTTAGAGGTTATGAGATTTTTTTCCTCTCG
TGGTCTACTTTGTTGAAGCCCACAAGCTTGTCGATACACCCACGGCGTGT
TGTGCATTTCGCCATTGTTCGTTGAAAATCCTCAGCCGCAAAACGGCGGG
CCTCTTGCTGCCGTTTTTCCGTCTTGAGCCTTGCTCTAGTCGTGAGACGA
CTCAAAACGTTGTTGTCTGCTCCTGTTGTTCTCGCCTTGAACCGCCGCAA
ACACTCGTAACTCCGAAGGTTATGGGAGACGACGCGGTGCAGCGGAGTGG
GGGTGACGCGCTCTGGAACACGGTTCAATACGCACTCCAGACGCGGCTCT
TCAAGGCCACGGGGCTCTGTCTCCTCGCCGCTGGGTCCGCCGTGTTCTTT
TCCGGGAGAGGGGGCGGGCGG
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Coding sequence (CDS) from alignment at C-linearis_contig97:345615..351185-

>mRNA_C-linearis_contig97.17092.1 ID=mRNA_C-linearis_contig97.17092.1|Name=mRNA_C-linearis_contig97.17092.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3042bp|location=Sequence derived from alignment at C-linearis_contig97:345615..351185- (Chordaria linearis ClinC8C monoicous)
ATGTTTCGTGGTAGATTGATTTCATCCCGTCCGCCATGTTGTAGGCATGG
GCATGGGCACGGGCATGGCAGCCTTGGCGCGAGGGAACGGTTGCGTCTGT
TGTTGTTGTCCAAGAAGCCACGGGGCAGCCCCATGCCCCGACAACGACAA
ACCCGCAGTGAAATGCTGTCCAGATCAGAGGAGGGCAGGGGGAAAATGTG
CATCGCCGCGGCGGCAACAGCAGCTGGGCCAGATGTCACCTGCAAGAAAG
CATGGTCGCGACTAGCTTCGACCTACAGCAGCAGCAACAACAACAGCAAC
AGTTGCAATGGCTTGCGCCGAACCAAAGGTGTCGTTGGCGCTCCAAGAAG
GCATGCGGATGGACCGCCGCTCTCTCTATCGCTGGCAAGCAGCGGAGAAC
GAGGGGTGGCGTGGCCACGCCCGCTTTTCCCTAAGCCAGGCGGGGCCAGC
GGTGCTAGACGAGCGAAGACCGATGGAGCGCATGGCGGAGGAAAAGAGGG
CGGGAAAGGGGAAGGGGGAGGGGGAGGAAAGACGATAAGCGCAGAGACAT
CGGGGAGCGATGCCACGAAGAAAGGAGCAGGGTTTGGAGGTGGAGGGAAA
GCGCTGGGCAACGGTGGAGGGGCCGATGCCGGTGCCATAGGTGGAGGATC
TGGAGGGGGAGGGGGAGGGGTTGTCGGTGACCTGCCGCATCAAGTGTCAG
AACTCTATGCCGATGTTTCGTGGTAGATTGATTTCATCCCGTCCGCCATG
TTGTAGGCATGGGCATGGGCACGGGCATGGCAGCCTTGGCGCGAGGGAAC
GGTTGCGTCTGTTGTTGTTGTCCAAGAAGCCACGGGGCAGCCCCATGCCC
CGACAACGACAAACCCGCAGTGAAATGCTGTCCAGATCAGAGGAGGGCAG
GGGGAAAATGTGCATCGCCGCGGCGGCAACAGCAGCTGGGCCAGATGTCA
CCTGCAAGAAAGCATGGTCGCGACTAGCTTCGACCTACAGCAGCAGCAAC
AACAACAGCAACAGTTGCAATGGCTTGCGCCGAACCAAAGGTGTCGTTGG
CGCTCCAAGAAGGCATGCGGATGGACCGCCGCTCTCTCTATCGCTGGCAA
GCAGCGGAGAACGAGGGGTGGCGTGGCCACGCCCGCTTTTCCCTAAGCCA
GGCGGGGCCAGCGGTGCTAGACGAGCGAAGACCGATGGAGCGCATGGCGG
AGGAAAAGAGGGCGGGAAAGGGGAAGGGGGAGGGGGAGGAAAGACGATAA
GCGCAGAGACATCGGGGAGCGATGCCACGAAGAAAGGAGCAGGGTTTGGA
GGTGGAGGGAAAGCGCTGGGCAACGGTGGAGGGGCCGATGCCGGTGCCAT
AGGTGGAGGATCTGGAGGGGGAGGGGGAGGGGTTGTCGGTGACCTGCCGC
ATCAAGTGTCAGAACTCTATGCCGACATGGAGCGTAATCTAATGTCGCGG
ATGCACGCGCAGGACAAGAACAGGTTCCGTGCTGTTGGCCTGTCCACCAT
GCTGCTGCTGACATGGAGCGTAATCTAATGTCGCGGATGCACGCGCAGGA
CAAGAACAGGTTCCGTGCTGTTGGCCTGTCCACCATGCTGCTGCTGATTT
GGGTGCTGAGCATGTTTGGGACGGAAATTCGGCGTTACTTTGCGAGCCAA
ACGGCGGAGGTGGCGAGGGAAACGCTCAAGGTCGAAGCGCTGCAGATTTG
GGTGCTGAGCATGTTTGGGACGGAAATTCGGCGTTACTTTGCGAGCCAAA
CGGCGGAGGTGGCGAGGGAAACGCTCAAGGTCGAAGCGCTGCAGGTTCAG
ACGCAAGAGCTGGCGACGGCATTGGTGCAGGCCCTGCTCAACGACCAAGA
GGTTGTGAGTGCCGGCGCGCTCTTCCTAAGAGAGGCGTCTGCCAACCCGG
AGACCCAGGTTCAGACGCAAGAGCTGGCGACGGCATTGGTGCAGGCCCTG
CTCAACGACCAAGAGGTTGTGAGTGCCGGCGCGCTCTTCCTAAGAGAGGC
GTCTGCCAACCCGGAGACCCAGGCCGCGCTTGTCAGCCTTGCGCTCTACG
TCCTCCAGCACCCTGGAACGCTCGCCGAAACCCGAGTGCTGGCCAAGAAG
CTGGTCCGCTCCATCCTGGATGACCCGGACTCAGTGCAGCAGGCCGCGCT
TGTCAGCCTTGCGCTCTACGTCCTCCAGCACCCTGGAACGCTCGCCGAAA
CCCGAGTGCTGGCCAAGAAGCTGGTCCGCTCCATCCTGGATGACCCGGAC
TCAGTGCAGCAGGTTACCGAGCTAGCGTTAAAGGTGATCAGGACCCCGCG
CTTCCGAAAGGGTGCCACGGAGCTCGTCGTAGCGCTCGGCCAAAGCGAAG
AGGTTACCGAGCTAGCGTTAAAGGTGATCAGGACCCCGCGCTTCCGAAAG
GGTGCCACGGAGCTCGTCGTAGCGCTCGGCCAAAGCGAAGAGGTGTACGC
TGCCGTGACCGCTCTCGCTTCGAGGGTCATTCAGGATCCAGAAGTGCAGG
CTACCCTTAGTTCCGTGCTCTCGGCGTCTTCGCGTGAGGTGTACGCTGCC
GTGACCGCTCTCGCTTCGAGGGTCATTCAGGATCCAGAAGTGCAGGCTAC
CCTTAGTTCCGTGCTCTCGGCGTCTTCGCGTGAGGTTTTGCGGGATCAGG
TGGTGTTCGACCGCTCCAAGGTGTTTGTCGCTCAGGTTTTGCGGGATCAG
GTGGTGTTCGACCGCTCCAAGGTGTTTGTCGCTCAGGTTATGGGAGACGA
CGCGGTGCAGCGGAGTGGGGGTGACGCGCTCTGGAACACGGTTCAATACG
CACTCCAGACGCGGCTCTTCAAGGCCACGGGGCTCTGTCTCCTCGCCGCT
GGGTCCGCCGTGTTCTTTTCCGGGAGAGGGGGCGGGCGGGTTATGGGAGA
CGACGCGGTGCAGCGGAGTGGGGGTGACGCGCTCTGGAACACGGTTCAAT
ACGCACTCCAGACGCGGCTCTTCAAGGCCACGGGGCTCTGTCTCCTCGCC
GCTGGGTCCGCCGTGTTCTTTTCCGGGAGAGGGGGCGGGCGG
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