prot_C-linearis_contig97.17074.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig97.17074.1
Unique Nameprot_C-linearis_contig97.17074.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length392
Homology
BLAST of mRNA_C-linearis_contig97.17074.1 vs. uniprot
Match: D8LKZ6_ECTSI (Endo/excinuclease amino terminal domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKZ6_ECTSI)

HSP 1 Score: 332 bits (851), Expect = 9.060e-109
Identity = 218/360 (60.56%), Postives = 231/360 (64.17%), Query Frame = 0
Query:   39 RKKFFHCYLLQSQDPKHKRSTYIGFTVDPSRRIRQHNGGINGGAYRTKRKRPWDMVAIVHGFPSKSSALQFETAWQHPQRDRRIKVKVRDLPVDSRRTVGVPSKLRLCKAMLCLDPWARYGLGIRFLREEYATCYAKLHLPLXXXVDGDPDTELSTGVQQGLPVYTPPPASPENRLEAYRCALCGGSSGVTVDGGPLVWRVDDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGETQEGEEGESEDDDF-------LKLSGCSQGSRAGGRIAQTRRVPASGGRSGRECRPSPSPAGGQDSVVLVDTTSDRHDSENNSEVRDGE--TQPSPPRLPLAERLRLRRLGSC 389
            RKKFFHCYLLQSQDPKHKRSTYIGFTVDP RRIRQHNG I GGA+RTKRKRPWDMVAIVHGFPSKSSALQFE AWQHPQRDRRIKVKV DLPVDSRRTVGVP KLRLCKAMLCLDPWARYGLGIRFLREEYA  Y+KL+LP    V GDPDTELSTG Q+GLPVY  PP S E RLEA                          XXXXXXXXXXXXXXXXXX                        +   GEE               L L    + S   G   Q  R PASG   G     SP+ A G   +  VDTTSDR+DS+ + E    +  T  SPP+LPLAERLRLRRL  C
Sbjct:    7 RKKFFHCYLLQSQDPKHKRSTYIGFTVDPGRRIRQHNGDIIGGAFRTKRKRPWDMVAIVHGFPSKSSALQFEAAWQHPQRDRRIKVKVPDLPVDSRRTVGVPGKLRLCKAMLCLDPWARYGLGIRFLREEYAASYSKLNLPQPLPVKGDPDTELSTGAQEGLPVYKSPPGSQEERLEAQXXXXXX-----------XXXXXXXXXXXXXXXXXXXXXXXXXXDGDGHDSDGAGGWSSDAGSTDFISQPYPGEEXXXXXXXXXXXSCWRLSLERAGKDSEGSG---QPERFPASGEMPGGV--KSPALANGNKHISFVDTTSDRYDSDGSEEGDQMKKITGQSPPKLPLAERLRLRRLRDC 350          
BLAST of mRNA_C-linearis_contig97.17074.1 vs. uniprot
Match: A0A836CE53_9STRA (GIY-YIG domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE53_9STRA)

HSP 1 Score: 150 bits (380), Expect = 1.720e-40
Identity = 70/122 (57.38%), Postives = 85/122 (69.67%), Query Frame = 0
Query:   58 STYIGFTVDPSRRIRQHNGGINGGAYRTKRKRPWDMVAIVHGFPSKSSALQFETAWQHPQRDRRIKVKVRDLPVDSRRTVGVPSKLRLCKAMLCLDPWARYGLGIRFLREEYATCYAKLHLP 179
            STYIGFTV P RRIRQHNG I  GA RT+ KRPW M  +V GFPSKS+ALQFE AWQHP +DR +K KV  L +  R + G+ +KL +CKA++CL+PW RYGLG  F   + A  +    LP
Sbjct:    2 STYIGFTVHPKRRIRQHNGEIKAGARRTRMKRPWQMALVVTGFPSKSAALQFEWAWQHPYKDRHVKGKVGALALKGRGSYGLKAKLAICKALMCLEPWCRYGLGTHFADNDIAAVFRAAALP 123          
BLAST of mRNA_C-linearis_contig97.17074.1 vs. uniprot
Match: A0A5J4Y6I9_9CHLO (Structure-specific endonuclease subunit SLX1 homolog n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y6I9_9CHLO)

HSP 1 Score: 142 bits (358), Expect = 5.010e-36
Identity = 70/129 (54.26%), Postives = 86/129 (66.67%), Query Frame = 0
Query:   42 FFHCYLLQSQDPKHKRSTYIGFTVDPSRRIRQHNGGINGGAYRTKRKRPWDMVAIVHGFPSKSSALQFETAWQHPQRDRRIKVKVRDLPVDSRRTVGVPSKLRLCKAMLCLDPWARYGLGIRFLREEYA 170
            F+ CYLL S DPK+K  TYIGFTV+P RR+RQHNG I  GA+RTKR RPWDMV +V+GFP+K  ALQFE AWQHP   + ++   + L   + R  G   K+RL   ML LDPW  Y L ++ L   YA
Sbjct:    4 FYGCYLLTSLDPKNKGRTYIGFTVNPRRRLRQHNGEITAGAHRTKRGRPWDMVLVVYGFPTKVQALQFEWAWQHPTASKAVREAAQRLGTIAMR--GAKGKVRLLFEMLSLDPWCYYPLTVQLLSTSYA 130          
BLAST of mRNA_C-linearis_contig97.17074.1 vs. uniprot
Match: D8QRY0_SELML (GIY-YIG domain-containing protein (Fragment) n=5 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8QRY0_SELML)

HSP 1 Score: 137 bits (344), Expect = 3.800e-35
Identity = 65/129 (50.39%), Postives = 88/129 (68.22%), Query Frame = 0
Query:   42 FFHCYLLQSQDPKHKRSTYIGFTVDPSRRIRQHNGGINGGAYRTKRKRPWDMVAIVHGFPSKSSALQFETAWQHPQRDRRIKVKVRDLPVDSRRTVGVPSKLRLCKAMLCLDPWARYGLGIRFLREEYA 170
            F+ CYLL+S +P+ K  TYIGFTV+P RRIRQHNG I  GA+RTK+KRPW+MV  V+GF SK+ ALQFE AWQHP+  + + +     P + R   G+  K+++  AMLC   W+R  L ++F   E+A
Sbjct:    1 FYGCYLLRSINPRFKGQTYIGFTVNPRRRIRQHNGEITCGAFRTKKKRPWEMVLCVYGFSSKTDALQFEWAWQHPKLSKEVVLPAEVKPKNLR---GIAGKIKILHAMLCSPKWSRMKLTVQFFSSEHA 126          
BLAST of mRNA_C-linearis_contig97.17074.1 vs. uniprot
Match: A0A2I0KXX6_PUNGR (GIY-YIG domain-containing protein n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0KXX6_PUNGR)

HSP 1 Score: 135 bits (340), Expect = 4.220e-35
Identity = 64/118 (54.24%), Postives = 82/118 (69.49%), Query Frame = 0
Query:   40 KKFFHCYLLQSQDPKHKRSTYIGFTVDPSRRIRQHNGGINGGAYRTKRKRPWDMVAIVHGFPSKSSALQFETAWQHPQRDRRIKVKVRDLPVDSRRTVGVPSKLRLCKAMLCLDPWAR 157
            ++F+ CYLL S  P+HK  TYIGFTV+P RRIRQHNG +  GA+RTK KRPW+MV  ++GFP+  SALQFE AWQHP    R  V VR+   + +   G+ +K++L  AML L PW R
Sbjct:   27 RRFYGCYLLVSLSPRHKGQTYIGFTVNPRRRIRQHNGELRSGAWRTKNKRPWEMVVCIYGFPTNVSALQFEWAWQHP----RESVAVREAAANFKSLSGITNKIKLAYAMLTLPPWQR 140          
BLAST of mRNA_C-linearis_contig97.17074.1 vs. uniprot
Match: UPI001F03346F (structure-specific endonuclease subunit SLX1 homolog n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F03346F)

HSP 1 Score: 138 bits (348), Expect = 7.370e-35
Identity = 78/195 (40.00%), Postives = 109/195 (55.90%), Query Frame = 0
Query:   37 EARKKFFHCYLLQSQDPKHKRSTYIGFTVDPSRRIRQHNGGIN-GGAYRTKRKRPWDMVAIVHGFPSKSSALQFETAWQHPQRDRRIKVKVRDLPVDSRRTVGVPSKLRLCKAMLCLDPWARYGLGIRFLREEYATCYAKL-----HLPLXXXVDGDPDTELSTGVQQGLPVYTPPPASP---ENRLEAYRCALC 222
            E   +F+ CYLL S +PK+K  TYIGFTVDP+RRIRQHNGGI  GGA++T ++ PW+M+  +HGFP++ SAL+FE AWQHP + RR+K  V       +    V    R+   ML + PW R  L IR+L++EY   +  L     H+P+               V   +P +  P ++    E  LE   C +C
Sbjct:    4 EEESRFYGCYLLYSLNPKYKGRTYIGFTVDPNRRIRQHNGGIEKGGAHKTSKRGPWEMILTIHGFPNEISALRFEWAWQHPMKSRRLKHVVEKKKSSEK---SVQFCFRVLTEMLRVGPWNRLPLTIRWLKDEYMMDFDTLKQPPIHMPI---------------VYGSIPSWKKPKSADIAREEELETKTCCIC 180          
BLAST of mRNA_C-linearis_contig97.17074.1 vs. uniprot
Match: A0A5E4G6P4_PRUDU (Structure-specific endonuclease subunit SLX1 homolog n=6 Tax=Prunus TaxID=3754 RepID=A0A5E4G6P4_PRUDU)

HSP 1 Score: 136 bits (342), Expect = 3.090e-34
Identity = 65/129 (50.39%), Postives = 84/129 (65.12%), Query Frame = 0
Query:   41 KFFHCYLLQSQDPKHKRSTYIGFTVDPSRRIRQHNGGINGGAYRTKRKRPWDMVAIVHGFPSKSSALQFETAWQHPQRDRRIKVKVRDLPVDSRRTVGVPSKLRLCKAMLCLDPWARYGLGIRFLREEY 169
            +FF CYLL S+ P++K  TYIGFTV+P RRIRQHNG I  GA+RTKRKRPW+MV  ++GFP+  SALQFE AWQHP     +   VR      +   G+ SK++L   ML L PW    + ++F   +Y
Sbjct:   26 RFFACYLLSSRSPRYKGHTYIGFTVNPRRRIRQHNGEIAQGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPT----VSKAVRQAAASFKSPRGLVSKIKLAYTMLTLPPWQSLNITVKFFSTQY 150          
BLAST of mRNA_C-linearis_contig97.17074.1 vs. uniprot
Match: UPI001068F671 (structure-specific endonuclease subunit SLX1 homolog n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI001068F671)

HSP 1 Score: 136 bits (343), Expect = 4.350e-34
Identity = 71/144 (49.31%), Postives = 92/144 (63.89%), Query Frame = 0
Query:   37 EARKKFFHCYLLQSQDPKHKRSTYIGFTVDPSRRIRQHNGGIN-GGAYRTKRKRPWDMVAIVHGFPSKSSALQFETAWQHPQRDRRIKVKVRDLPVDSRRTVGVPSKLRLCKAMLCLDPWARYGLGIRFLREEYATCYAKLHLP 179
            E + KF+ CYLL   +PK+K  TYIGFTVDP+RRI+QHNGG+  GGAYRT  K PW+MV  VHGFP++ SAL+FE AWQHP R RR+K  V +     +         R+   ML + PW R  L I++L+E+Y   +  L  P
Sbjct:    4 EEKSKFYGCYLLYCLNPKYKGRTYIGFTVDPNRRIKQHNGGVQKGGAYRTSNKGPWEMVLTVHGFPNEISALRFEWAWQHPFRSRRLKRVVANKKSTEK---NFAFYFRVLTEMLRIGPWNRLALTIQWLKEDYHMDFDLLKQP 144          
BLAST of mRNA_C-linearis_contig97.17074.1 vs. uniprot
Match: UPI0006AB688C (structure-specific endonuclease subunit SLX1-like n=1 Tax=Brassica napus TaxID=3708 RepID=UPI0006AB688C)

HSP 1 Score: 132 bits (333), Expect = 4.350e-34
Identity = 65/118 (55.08%), Postives = 80/118 (67.80%), Query Frame = 0
Query:   40 KKFFHCYLLQSQDPKHKRSTYIGFTVDPSRRIRQHNGGINGGAYRTKRKRPWDMVAIVHGFPSKSSALQFETAWQHPQRDRRIKVKVRDLPVDSRRTVGVPSKLRLCKAMLCLDPWAR 157
            K+FF CY+L S  P+HK  TYIGFTV+P RRIRQHNG I  GAYRTK+KRPW+MV  ++GFP+K SALQFE AWQHP    R  + VR+     +   G+ S ++L   ML L  W R
Sbjct:   26 KEFFACYILTSLSPRHKGHTYIGFTVNPRRRIRQHNGEITSGAYRTKKKRPWEMVLCIYGFPTKVSALQFEWAWQHP----RESLAVREAAAAFKSISGLASNIKLAYTMLSLPAWNR 139          
BLAST of mRNA_C-linearis_contig97.17074.1 vs. uniprot
Match: A0A061RKW1_9CHLO (Structure-specific endonuclease subunit SLX1 homolog n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RKW1_9CHLO)

HSP 1 Score: 136 bits (343), Expect = 4.570e-34
Identity = 71/140 (50.71%), Postives = 90/140 (64.29%), Query Frame = 0
Query:   40 KKFFHCYLLQSQDPKHKRSTYIGFTVDPSRRIRQHNGGINGGAYRTKRKRPWDMVAIVHGFPSKSSALQFETAWQHPQRDRRIKVKVRDLPVDSRRTVGVPSKLRLCKAMLCLDPWARYGLGIRFLREEYATCYAKLHLP 179
            KKFF CYLL S DPK K  TYIGFTV+P RRIRQHNG I  GA+RTK+ RPWDM  +++GFP+K  ALQFE AWQHP     ++    +L    R   GV  K+RL   ML ++P+  Y L ++FL  +Y+   A +  P
Sbjct:    3 KKFFGCYLLASLDPKCKGRTYIGFTVNPRRRIRQHNGQIVNGAHRTKKGRPWDMALVLYGFPTKIHALQFEWAWQHPSTSLAVRDAYNNLT--KRERGGVAGKIRLLIEMLRVEPFCFYQLTLQFLSSKYSAMRAGMPSP 140          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig97.17074.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKZ6_ECTSI9.060e-10960.56Endo/excinuclease amino terminal domain-containing... [more]
A0A836CE53_9STRA1.720e-4057.38GIY-YIG domain-containing protein n=1 Tax=Tribonem... [more]
A0A5J4Y6I9_9CHLO5.010e-3654.26Structure-specific endonuclease subunit SLX1 homol... [more]
D8QRY0_SELML3.800e-3550.39GIY-YIG domain-containing protein (Fragment) n=5 T... [more]
A0A2I0KXX6_PUNGR4.220e-3554.24GIY-YIG domain-containing protein n=1 Tax=Punica g... [more]
UPI001F03346F7.370e-3540.00structure-specific endonuclease subunit SLX1 homol... [more]
A0A5E4G6P4_PRUDU3.090e-3450.39Structure-specific endonuclease subunit SLX1 homol... [more]
UPI001068F6714.350e-3449.31structure-specific endonuclease subunit SLX1 homol... [more]
UPI0006AB688C4.350e-3455.08structure-specific endonuclease subunit SLX1-like ... [more]
A0A061RKW1_9CHLO4.570e-3450.71Structure-specific endonuclease subunit SLX1 homol... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000305GIY-YIG endonucleasePFAMPF01541GIY-YIGcoord: 44..119
e-value: 1.4E-15
score: 57.3
IPR000305GIY-YIG endonucleasePROSITEPS50164GIY_YIGcoord: 41..124
score: 19.156
IPR035901GIY-YIG endonuclease superfamilyGENE3D3.40.1440.10coord: 37..136
e-value: 4.7E-17
score: 63.7
IPR035901GIY-YIG endonuclease superfamilySUPERFAMILY82771GIY-YIG endonucleasecoord: 54..120
NoneNo IPR availablePANTHERPTHR20208FAMILY NOT NAMEDcoord: 28..244
IPR027520Structure-specific endonuclease subunit Slx1HAMAPMF_03100Endonuc_su_Slx1coord: 38..360
score: 22.194

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig97contigC-linearis_contig97:206945..209695 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig97.17074.1mRNA_C-linearis_contig97.17074.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig97 206945..210276 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig97.17074.1 ID=prot_C-linearis_contig97.17074.1|Name=mRNA_C-linearis_contig97.17074.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=392bp
MLLASTRMEDGDAALSTSTATIHKAPKGHSTRKKGPEARKKFFHCYLLQS
QDPKHKRSTYIGFTVDPSRRIRQHNGGINGGAYRTKRKRPWDMVAIVHGF
PSKSSALQFETAWQHPQRDRRIKVKVRDLPVDSRRTVGVPSKLRLCKAML
CLDPWARYGLGIRFLREEYATCYAKLHLPLPLPVDGDPDTELSTGVQQGL
PVYTPPPASPENRLEAYRCALCGGSSGVTVDGGPLVWRVDDSSDDEDDEY
GGRGGADESGCDSEQAAREDGGGWSGGSASRNNGETQEGEEGESEDDDFL
KLSGCSQGSRAGGRIAQTRRVPASGGRSGRECRPSPSPAGGQDSVVLVDT
TSDRHDSENNSEVRDGETQPSPPRLPLAERLRLRRLGSCHG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000305GIY-YIG_endonuc
IPR035901GIY-YIG_endonuc_sf
IPR027520Slx1