mRNA_C-linearis_contig97.17074.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig97.17074.1
Unique NamemRNA_C-linearis_contig97.17074.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig97.17074.1 vs. uniprot
Match: D8LKZ6_ECTSI (Endo/excinuclease amino terminal domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKZ6_ECTSI)

HSP 1 Score: 332 bits (851), Expect = 1.570e-107
Identity = 218/360 (60.56%), Postives = 231/360 (64.17%), Query Frame = 1 
Query:  370 RKKFFHCYLLQSQDPKHKRSTYIGFTVDPSRRIRQHNGGINGGAYRTKRKRPWDMVAIVHGFPSKSSALQFETAWQHPQRDRRIKVKVRDLPVDSRRTVGVPSKLRLCKAMLCLDPWARYGLGIRFLREEYATCYAKLHLPLXXXVDGDPDTELSTGVQQGLPVYTPPPASPENRLEAYRCALCGGSSGVTVDGGPLVWRVDDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGETQEGEEGESEDDDF-------LKLSGCSQGSRAGGRIAQTRRVPASGGRSGRECRPSPSPAGGQDSVVLVDTTSDRHDSENNSEVRDGE--TQPSPPRLPLAERLRLRRLGSC 1422
            RKKFFHCYLLQSQDPKHKRSTYIGFTVDP RRIRQHNG I GGA+RTKRKRPWDMVAIVHGFPSKSSALQFE AWQHPQRDRRIKVKV DLPVDSRRTVGVP KLRLCKAMLCLDPWARYGLGIRFLREEYA  Y+KL+LP    V GDPDTELSTG Q+GLPVY  PP S E RLEA                          XXXXXXXXXXXXXXXXXX                        +   GEE               L L    + S   G   Q  R PASG   G     SP+ A G   +  VDTTSDR+DS+ + E    +  T  SPP+LPLAERLRLRRL  C
Sbjct:    7 RKKFFHCYLLQSQDPKHKRSTYIGFTVDPGRRIRQHNGDIIGGAFRTKRKRPWDMVAIVHGFPSKSSALQFEAAWQHPQRDRRIKVKVPDLPVDSRRTVGVPGKLRLCKAMLCLDPWARYGLGIRFLREEYAASYSKLNLPQPLPVKGDPDTELSTGAQEGLPVYKSPPGSQEERLEAQXXXXXX-----------XXXXXXXXXXXXXXXXXXXXXXXXXXDGDGHDSDGAGGWSSDAGSTDFISQPYPGEEXXXXXXXXXXXSCWRLSLERAGKDSEGSG---QPERFPASGEMPGGV--KSPALANGNKHISFVDTTSDRYDSDGSEEGDQMKKITGQSPPKLPLAERLRLRRLRDC 350
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BLAST of mRNA_C-linearis_contig97.17074.1 vs. uniprot
Match: A0A836CE53_9STRA (GIY-YIG domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE53_9STRA)

HSP 1 Score: 150 bits (380), Expect = 9.570e-40
Identity = 70/122 (57.38%), Postives = 85/122 (69.67%), Query Frame = 1 
Query:  427 STYIGFTVDPSRRIRQHNGGINGGAYRTKRKRPWDMVAIVHGFPSKSSALQFETAWQHPQRDRRIKVKVRDLPVDSRRTVGVPSKLRLCKAMLCLDPWARYGLGIRFLREEYATCYAKLHLP 792
            STYIGFTV P RRIRQHNG I  GA RT+ KRPW M  +V GFPSKS+ALQFE AWQHP +DR +K KV  L +  R + G+ +KL +CKA++CL+PW RYGLG  F   + A  +    LP
Sbjct:    2 STYIGFTVHPKRRIRQHNGEIKAGARRTRMKRPWQMALVVTGFPSKSAALQFEWAWQHPYKDRHVKGKVGALALKGRGSYGLKAKLAICKALMCLEPWCRYGLGTHFADNDIAAVFRAAALP 123
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BLAST of mRNA_C-linearis_contig97.17074.1 vs. uniprot
Match: A0A5J4Y6I9_9CHLO (Structure-specific endonuclease subunit SLX1 homolog n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y6I9_9CHLO)

HSP 1 Score: 142 bits (358), Expect = 2.480e-35
Identity = 70/129 (54.26%), Postives = 86/129 (66.67%), Query Frame = 1 
Query:  379 FFHCYLLQSQDPKHKRSTYIGFTVDPSRRIRQHNGGINGGAYRTKRKRPWDMVAIVHGFPSKSSALQFETAWQHPQRDRRIKVKVRDLPVDSRRTVGVPSKLRLCKAMLCLDPWARYGLGIRFLREEYA 765
            F+ CYLL S DPK+K  TYIGFTV+P RR+RQHNG I  GA+RTKR RPWDMV +V+GFP+K  ALQFE AWQHP   + ++   + L   + R  G   K+RL   ML LDPW  Y L ++ L   YA
Sbjct:    4 FYGCYLLTSLDPKNKGRTYIGFTVNPRRRLRQHNGEITAGAHRTKRGRPWDMVLVVYGFPTKVQALQFEWAWQHPTASKAVREAAQRLGTIAMR--GAKGKVRLLFEMLSLDPWCYYPLTVQLLSTSYA 130
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BLAST of mRNA_C-linearis_contig97.17074.1 vs. uniprot
Match: D8QRY0_SELML (GIY-YIG domain-containing protein (Fragment) n=5 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8QRY0_SELML)

HSP 1 Score: 137 bits (344), Expect = 1.730e-34
Identity = 65/129 (50.39%), Postives = 88/129 (68.22%), Query Frame = 1 
Query:  379 FFHCYLLQSQDPKHKRSTYIGFTVDPSRRIRQHNGGINGGAYRTKRKRPWDMVAIVHGFPSKSSALQFETAWQHPQRDRRIKVKVRDLPVDSRRTVGVPSKLRLCKAMLCLDPWARYGLGIRFLREEYA 765
            F+ CYLL+S +P+ K  TYIGFTV+P RRIRQHNG I  GA+RTK+KRPW+MV  V+GF SK+ ALQFE AWQHP+  + + +     P + R   G+  K+++  AMLC   W+R  L ++F   E+A
Sbjct:    1 FYGCYLLRSINPRFKGQTYIGFTVNPRRRIRQHNGEITCGAFRTKKKRPWEMVLCVYGFSSKTDALQFEWAWQHPKLSKEVVLPAEVKPKNLR---GIAGKIKILHAMLCSPKWSRMKLTVQFFSSEHA 126
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BLAST of mRNA_C-linearis_contig97.17074.1 vs. uniprot
Match: A0A2I0KXX6_PUNGR (GIY-YIG domain-containing protein n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0KXX6_PUNGR)

HSP 1 Score: 135 bits (340), Expect = 1.870e-34
Identity = 64/118 (54.24%), Postives = 82/118 (69.49%), Query Frame = 1 
Query:  373 KKFFHCYLLQSQDPKHKRSTYIGFTVDPSRRIRQHNGGINGGAYRTKRKRPWDMVAIVHGFPSKSSALQFETAWQHPQRDRRIKVKVRDLPVDSRRTVGVPSKLRLCKAMLCLDPWAR 726
            ++F+ CYLL S  P+HK  TYIGFTV+P RRIRQHNG +  GA+RTK KRPW+MV  ++GFP+  SALQFE AWQHP    R  V VR+   + +   G+ +K++L  AML L PW R
Sbjct:   27 RRFYGCYLLVSLSPRHKGQTYIGFTVNPRRRIRQHNGELRSGAWRTKNKRPWEMVVCIYGFPTNVSALQFEWAWQHP----RESVAVREAAANFKSLSGITNKIKLAYAMLTLPPWQR 140
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BLAST of mRNA_C-linearis_contig97.17074.1 vs. uniprot
Match: UPI001F03346F (structure-specific endonuclease subunit SLX1 homolog n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F03346F)

HSP 1 Score: 138 bits (348), Expect = 3.440e-34
Identity = 78/195 (40.00%), Postives = 109/195 (55.90%), Query Frame = 1 
Query:  364 EARKKFFHCYLLQSQDPKHKRSTYIGFTVDPSRRIRQHNGGIN-GGAYRTKRKRPWDMVAIVHGFPSKSSALQFETAWQHPQRDRRIKVKVRDLPVDSRRTVGVPSKLRLCKAMLCLDPWARYGLGIRFLREEYATCYAKL-----HLPLXXXVDGDPDTELSTGVQQGLPVYTPPPASP---ENRLEAYRCALC 921
            E   +F+ CYLL S +PK+K  TYIGFTVDP+RRIRQHNGGI  GGA++T ++ PW+M+  +HGFP++ SAL+FE AWQHP + RR+K  V       +    V    R+   ML + PW R  L IR+L++EY   +  L     H+P+               V   +P +  P ++    E  LE   C +C
Sbjct:    4 EEESRFYGCYLLYSLNPKYKGRTYIGFTVDPNRRIRQHNGGIEKGGAHKTSKRGPWEMILTIHGFPNEISALRFEWAWQHPMKSRRLKHVVEKKKSSEK---SVQFCFRVLTEMLRVGPWNRLPLTIRWLKDEYMMDFDTLKQPPIHMPI---------------VYGSIPSWKKPKSADIAREEELETKTCCIC 180
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BLAST of mRNA_C-linearis_contig97.17074.1 vs. uniprot
Match: A0A5E4G6P4_PRUDU (Structure-specific endonuclease subunit SLX1 homolog n=6 Tax=Prunus TaxID=3754 RepID=A0A5E4G6P4_PRUDU)

HSP 1 Score: 136 bits (342), Expect = 1.390e-33
Identity = 65/129 (50.39%), Postives = 84/129 (65.12%), Query Frame = 1 
Query:  376 KFFHCYLLQSQDPKHKRSTYIGFTVDPSRRIRQHNGGINGGAYRTKRKRPWDMVAIVHGFPSKSSALQFETAWQHPQRDRRIKVKVRDLPVDSRRTVGVPSKLRLCKAMLCLDPWARYGLGIRFLREEY 762
            +FF CYLL S+ P++K  TYIGFTV+P RRIRQHNG I  GA+RTKRKRPW+MV  ++GFP+  SALQFE AWQHP     +   VR      +   G+ SK++L   ML L PW    + ++F   +Y
Sbjct:   26 RFFACYLLSSRSPRYKGHTYIGFTVNPRRRIRQHNGEIAQGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPT----VSKAVRQAAASFKSPRGLVSKIKLAYTMLTLPPWQSLNITVKFFSTQY 150
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BLAST of mRNA_C-linearis_contig97.17074.1 vs. uniprot
Match: UPI0006AB688C (structure-specific endonuclease subunit SLX1-like n=1 Tax=Brassica napus TaxID=3708 RepID=UPI0006AB688C)

HSP 1 Score: 132 bits (333), Expect = 1.850e-33
Identity = 65/118 (55.08%), Postives = 80/118 (67.80%), Query Frame = 1 
Query:  373 KKFFHCYLLQSQDPKHKRSTYIGFTVDPSRRIRQHNGGINGGAYRTKRKRPWDMVAIVHGFPSKSSALQFETAWQHPQRDRRIKVKVRDLPVDSRRTVGVPSKLRLCKAMLCLDPWAR 726
            K+FF CY+L S  P+HK  TYIGFTV+P RRIRQHNG I  GAYRTK+KRPW+MV  ++GFP+K SALQFE AWQHP    R  + VR+     +   G+ S ++L   ML L  W R
Sbjct:   26 KEFFACYILTSLSPRHKGHTYIGFTVNPRRRIRQHNGEITSGAYRTKKKRPWEMVLCIYGFPTKVSALQFEWAWQHP----RESLAVREAAAAFKSISGLASNIKLAYTMLSLPAWNR 139
[Close]
BLAST of mRNA_C-linearis_contig97.17074.1 vs. uniprot
Match: UPI001068F671 (structure-specific endonuclease subunit SLX1 homolog n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI001068F671)

HSP 1 Score: 136 bits (343), Expect = 1.970e-33
Identity = 71/144 (49.31%), Postives = 92/144 (63.89%), Query Frame = 1 
Query:  364 EARKKFFHCYLLQSQDPKHKRSTYIGFTVDPSRRIRQHNGGIN-GGAYRTKRKRPWDMVAIVHGFPSKSSALQFETAWQHPQRDRRIKVKVRDLPVDSRRTVGVPSKLRLCKAMLCLDPWARYGLGIRFLREEYATCYAKLHLP 792
            E + KF+ CYLL   +PK+K  TYIGFTVDP+RRI+QHNGG+  GGAYRT  K PW+MV  VHGFP++ SAL+FE AWQHP R RR+K  V +     +         R+   ML + PW R  L I++L+E+Y   +  L  P
Sbjct:    4 EEKSKFYGCYLLYCLNPKYKGRTYIGFTVDPNRRIKQHNGGVQKGGAYRTSNKGPWEMVLTVHGFPNEISALRFEWAWQHPFRSRRLKRVVANKKSTEK---NFAFYFRVLTEMLRIGPWNRLALTIQWLKEDYHMDFDLLKQP 144
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BLAST of mRNA_C-linearis_contig97.17074.1 vs. uniprot
Match: A0A061RKW1_9CHLO (Structure-specific endonuclease subunit SLX1 homolog n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RKW1_9CHLO)

HSP 1 Score: 136 bits (343), Expect = 2.080e-33
Identity = 71/140 (50.71%), Postives = 90/140 (64.29%), Query Frame = 1 
Query:  373 KKFFHCYLLQSQDPKHKRSTYIGFTVDPSRRIRQHNGGINGGAYRTKRKRPWDMVAIVHGFPSKSSALQFETAWQHPQRDRRIKVKVRDLPVDSRRTVGVPSKLRLCKAMLCLDPWARYGLGIRFLREEYATCYAKLHLP 792
            KKFF CYLL S DPK K  TYIGFTV+P RRIRQHNG I  GA+RTK+ RPWDM  +++GFP+K  ALQFE AWQHP     ++    +L    R   GV  K+RL   ML ++P+  Y L ++FL  +Y+   A +  P
Sbjct:    3 KKFFGCYLLASLDPKCKGRTYIGFTVNPRRRIRQHNGQIVNGAHRTKKGRPWDMALVLYGFPTKIHALQFEWAWQHPSTSLAVRDAYNNLT--KRERGGVAGKIRLLIEMLRVEPFCFYQLTLQFLSSKYSAMRAGMPSP 140
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig97.17074.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKZ6_ECTSI1.570e-10760.56Endo/excinuclease amino terminal domain-containing... [more]
A0A836CE53_9STRA9.570e-4057.38GIY-YIG domain-containing protein n=1 Tax=Tribonem... [more]
A0A5J4Y6I9_9CHLO2.480e-3554.26Structure-specific endonuclease subunit SLX1 homol... [more]
D8QRY0_SELML1.730e-3450.39GIY-YIG domain-containing protein (Fragment) n=5 T... [more]
A0A2I0KXX6_PUNGR1.870e-3454.24GIY-YIG domain-containing protein n=1 Tax=Punica g... [more]
UPI001F03346F3.440e-3440.00structure-specific endonuclease subunit SLX1 homol... [more]
A0A5E4G6P4_PRUDU1.390e-3350.39Structure-specific endonuclease subunit SLX1 homol... [more]
UPI0006AB688C1.850e-3355.08structure-specific endonuclease subunit SLX1-like ... [more]
UPI001068F6711.970e-3349.31structure-specific endonuclease subunit SLX1 homol... [more]
A0A061RKW1_9CHLO2.080e-3350.71Structure-specific endonuclease subunit SLX1 homol... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig97contigC-linearis_contig97:206945..210276 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score342.0
Seed ortholog evalue3.6e-91
Seed eggNOG ortholog2880.D8LKZ6
KEGG koko:K15078
KEGG Pathwayko03460,map03460
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000723,GO:0001325,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0006139,GO:0006259,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008821,GO:0009893,GO:0009987,GO:0010604,GO:0010638,GO:0016043,GO:0016787,GO:0016788,GO:0016888,GO:0016889,GO:0016893,GO:0016894,GO:0017108,GO:0019219,GO:0019222,GO:0022607,GO:0031323,GO:0031325,GO:0031974,GO:0031981,GO:0032200,GO:0032204,GO:0032206,GO:0032991,GO:0033043,GO:0033044,GO:0033557,GO:0034641,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0045935,GO:0046483,GO:0048256,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051052,GO:0051054,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051276,GO:0060249,GO:0060255,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090656,GO:0090737,GO:0140097,GO:1901360,GO:1904429,GO:1904431,GO:2001252
EggNOG free text desc.5'-flap endonuclease activity
EggNOG OGsKOG3005@1,KOG3005@2759
Ec32 ortholog descriptionGIY-YIG nuclease superfamily
Ec32 orthologEc-11_006130.1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400
Exons7
Model size1431
Cds size1176
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig97.17074.1prot_C-linearis_contig97.17074.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig97 206945..209695 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930830.890399-CDS-C-linearis_contig97:206944..2071031622930830.890399-CDS-C-linearis_contig97:206944..207103Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 206945..207103 -
1690881271.9617314-CDS-C-linearis_contig97:206944..2071031690881271.9617314-CDS-C-linearis_contig97:206944..207103Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 206945..207103 -
1622930830.9294002-CDS-C-linearis_contig97:207136..2074871622930830.9294002-CDS-C-linearis_contig97:207136..207487Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 207137..207487 -
1690881271.9755588-CDS-C-linearis_contig97:207136..2074871690881271.9755588-CDS-C-linearis_contig97:207136..207487Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 207137..207487 -
1622930830.953453-CDS-C-linearis_contig97:207751..2079471622930830.953453-CDS-C-linearis_contig97:207751..207947Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 207752..207947 -
1690881271.990252-CDS-C-linearis_contig97:207751..2079471690881271.990252-CDS-C-linearis_contig97:207751..207947Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 207752..207947 -
1622930830.9753304-CDS-C-linearis_contig97:208413..2086311622930830.9753304-CDS-C-linearis_contig97:208413..208631Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 208414..208631 -
1690881272.006543-CDS-C-linearis_contig97:208413..2086311690881272.006543-CDS-C-linearis_contig97:208413..208631Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 208414..208631 -
1622930830.9922333-CDS-C-linearis_contig97:209162..2091901622930830.9922333-CDS-C-linearis_contig97:209162..209190Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 209163..209190 -
1690881272.0239367-CDS-C-linearis_contig97:209162..2091901690881272.0239367-CDS-C-linearis_contig97:209162..209190Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 209163..209190 -
1622930831.0082521-CDS-C-linearis_contig97:209471..2096951622930831.0082521-CDS-C-linearis_contig97:209471..209695Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 209472..209695 -
1690881272.0376945-CDS-C-linearis_contig97:209471..2096951690881272.0376945-CDS-C-linearis_contig97:209471..209695Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 209472..209695 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930831.0202303-UTR-C-linearis_contig97:209695..2097071622930831.0202303-UTR-C-linearis_contig97:209695..209707Chordaria linearis ClinC8C monoicousUTRC-linearis_contig97 209696..209707 -
1690881272.054154-UTR-C-linearis_contig97:209695..2097071690881272.054154-UTR-C-linearis_contig97:209695..209707Chordaria linearis ClinC8C monoicousUTRC-linearis_contig97 209696..209707 -
1622930831.0345705-UTR-C-linearis_contig97:210033..2102761622930831.0345705-UTR-C-linearis_contig97:210033..210276Chordaria linearis ClinC8C monoicousUTRC-linearis_contig97 210034..210276 -
1690881272.0648375-UTR-C-linearis_contig97:210033..2102761690881272.0648375-UTR-C-linearis_contig97:210033..210276Chordaria linearis ClinC8C monoicousUTRC-linearis_contig97 210034..210276 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig97.17074.1

>prot_C-linearis_contig97.17074.1 ID=prot_C-linearis_contig97.17074.1|Name=mRNA_C-linearis_contig97.17074.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=392bp
MLLASTRMEDGDAALSTSTATIHKAPKGHSTRKKGPEARKKFFHCYLLQS
QDPKHKRSTYIGFTVDPSRRIRQHNGGINGGAYRTKRKRPWDMVAIVHGF
PSKSSALQFETAWQHPQRDRRIKVKVRDLPVDSRRTVGVPSKLRLCKAML
CLDPWARYGLGIRFLREEYATCYAKLHLPLPLPVDGDPDTELSTGVQQGL
PVYTPPPASPENRLEAYRCALCGGSSGVTVDGGPLVWRVDDSSDDEDDEY
GGRGGADESGCDSEQAAREDGGGWSGGSASRNNGETQEGEEGESEDDDFL
KLSGCSQGSRAGGRIAQTRRVPASGGRSGRECRPSPSPAGGQDSVVLVDT
TSDRHDSENNSEVRDGETQPSPPRLPLAERLRLRRLGSCHG*
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mRNA from alignment at C-linearis_contig97:206945..210276-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig97.17074.1 ID=mRNA_C-linearis_contig97.17074.1|Name=mRNA_C-linearis_contig97.17074.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3332bp|location=Sequence derived from alignment at C-linearis_contig97:206945..210276- (Chordaria linearis ClinC8C monoicous)
CGCACAGCTGTCATCGCATCTTGATCTCCCTTTGCTGGTCGTGGTTGGCG
TTCGGATCAGGAGAGTGCGGCCACTGGACGACCCACCCCTTCTATAGGTT
GGAACTCCAGCAGTGTGTGGTTTTCTCTCCTTAGGCCTGCATTGCTGAGC
GAAAACGTGGTTACGCAGCGTGTGTACAAAAAAAAGTCAACGGGAACGGG
GGAACGCGCAGCGAGCAACTCCGTCCGTGCTGCACTGCTGCAGGTATGTA
TGTATGTGATGAAGCTGGCTCGGCTGGCGATGCACCCCATAATATCAGTA
CACATCATACTACTTTATGCGTGTGCTGATGTGCACACAGGTTGTGGTTG
ATGAACGTAGAAGGCTGCTCTGGTCGTAGATCACGTAGCAACGTGTTTTG
AGACCAAGACTACAAAAACGACTCCGTACACCGTCTCCGTGTGGTGTTTG
TTTGCCGGTGCAGGCAACCTTGATGTGAACGCTTATCTCTCTCCCACTCC
CCCGTCTCTTGACTGGCCACACGGTGGTTTTCGGACTTGACCCCCTGCAT
CCCGCCCACCATCGAGAAGCAGCACTGCTTTATGCTGTTAGCGTCAACAA
GAATGGAAGACGGAGATGCAGCCTTATCCACGTCCACTGCAACAATCCAC
AAAGCCCCGAAAGGGCACAGCACGCGCAAGAAAGGGCCCGAGGCGCGCAA
GAAGTTCTTTCACTGCTACCTGCTGCAGTCACAAGACCCCAAGCACAAGC
GTTCGACGTATATTGGCTTCACCGTAGATCCCAGCCGAAGAATACGGCAA
CACAAGTGAGACTACATCTTCTACAAAGTAGTCTTGTTCTCGGCGGTCGA
TTGACACGGATAAGACTACATACTGTAGGTTTCCCCGCAAAGCTGTATTG
TCCAAGCACACGTCTGCAATACTGCAGGTTCATGCACGATATGGACACCA
TGTTTCGAAGTATTTGTATTTAGTCTGTGCTGTGGCCCATTCTCAATCTC
CTCGTTGCTCCGCACTACACGTTTCTCTCGCTCGCTTTTGCAACCCCATA
TCCGAATCGACGGCACACCTGCCCTTGATATTCCAGCGGAGGCATCAATG
GCGGCGCATACCGGGTGAGGCGCAAGGCGTTGGTGTTGTGTTGTGTTGTG
TTGTGTTGCCGCTGCACAGTTGTACAAGTACAAGATAATCCGCTGTGTGT
AAGGCCACGAAACCAATCTGCTGGTAGCCTGCGCCCTCGTAGAGCATAGC
GAGAAGATAGAGTAGCTTCAAGAGGCGTGTTTTTTTCGCGGGAATGCCTG
AATACCTGACGTTCTGCGTTTGGGTGCCAGCTGCAGCAGCACTCATCCTG
GATCTCTCTCAACATGCTGAAACAGCTTCATCAGTATGTGCAAACCTGCG
AAGCTACCGCAGATGCTTAAGCTTGGACATCAGCTTCTCTTCGGCATATT
ACTCACCGCCAACAGCAGTGTTGATGTCGTGTGGGCCATGGTGACTATCT
TCTGCGATACATGTTTGTCGATGATCGTATGGTAAGCACTAGCTCGCCAG
TACTACGGCTCTTGTACGCTCGTTGTCATCTTGCTCTCAGCTTGCTCGTG
CGTCCTTCCATCGCGGACTGTTTTTCTGTCGTCCTCACGTTCCAGACAAA
GCGCAAACGCCCTTGGGATATGGTGGCCATAGTGCACGGTTTCCCTTCAA
AATCGTCCGCGCTGCAGTTCGAGACGGCCTGGCAGCACCCCCAACGAGAC
CGCCGCATTAAGGTCAAAGTTAGAGATTTGCCGGTGGACTCACGTCGAAC
GGTCGGGGTACCGAGCAAGCTCCGCCTCTGCAAGGCCATGCTGTGCCTCG
ACCCTTGGGCAAGGTGAGTCGAGTTATCGCTGGCTTCTCACCCCTGGGTT
CACAAGTACGTGTTCCGGCGGCAGTCTTGAATATTCGTATTTGTAGCCGG
CGCAGAAGGAATAGGCTTACATTGTACTTCGTAGATGTTTTTGCGCAGTG
GCTTCAGTCTCCCGAGAAGGAAGAAGGAACTTCAAATTTGTCGTTTTGTT
TCTTGTGCTCTCCATTCTTCCTCTGCACTGTTGCCAAGGTACTGTAGTTG
GCGCCCTAAGGATTCTCTCGTATTCCAGAGTACTCGGCTGTTCTCCTGCA
GAGACCGTCAATACCCACGCTTTGTTCTCTCGTCTCCAAGTGCTTGAACG
ACACACTGATCAAGGATGTAGGCCACTCAATGCATACCTACGTCTACCAC
GACGCCCCCCCCCGCCCAAACCAAAACGACGCACCCATCTACCCACCCAC
ACCATGCCACGTCGCTGACGAAACGACAGGTACGGCCTGGGCATCCGCTT
CTTGCGAGAGGAGTACGCGACATGCTACGCCAAGCTGCACCTGCCCTTGC
CCCTCCCGGTCGACGGCGACCCCGACACCGAACTCAGCACGGGGGTTCAG
CAGGGCCTACCTGTCTACACACCGCCCCCTGCTTCTCCAGAGAACCGACT
CGAGGCATACAGGTGCGCCCTTTGCGTGCAGTCTTTTCTCGCGGGCGCGA
CCCTGATGGCGTGCTACCACTGCGGAGCGGCGGCGCACGTGAGGTGCCTG
GCGGACCGAATGCTCGGCGAGGCCGACGGGGGCGACGAGTCGGAGGTCAT
CCCCTCCGAGGGTCCTTGTTGGGCGCCGGCTTGTGCGCGGCGACTTCTGT
GGTCGCGGCTTGTGAAGGGCGTGCAGGCGTACCGCCCGAGATCAAGCCGC
CCGGCGGAGGACGAGGATCCAGAAGACACGCCCGTGGAGGGTGGAAGTAG
CGGTGTGACGGTCGACGGCGGGCCTCTCGTGTGGCGAGTAGACGATAGCA
GCGACGATGAGGACGACGAATATGGCGGTCGCGGCGGTGCTGACGAGTCG
GGGTGTGACAGCGAACAAGCCGCCCGGGAAGATGGTGGAGGTTGGAGCGG
CGGTTCGGCTTCGAGAAACAACGGGGAAACTCAGGAGGGGGAGGAGGGGG
AAAGTGAGGACGATGACTTCTTGAAGCTGAGTGGATGCTCTCAAGGCAGC
CGAGCAGGCGGCCGGATTGCGCAGACGAGGCGTGTTCCGGCATCCGGGGG
GCGGTCAGGAAGGGAATGTAGACCGTCTCCATCGCCCGCCGTTGGTCGAA
CGCAGGCGGCGAAGTCTAGAAAGGGCGGGCAAGACTCGGTGGTACTCGTC
GACACCACCAGCGATCGGCACGACAGCGAGAATAATAGTGAGGTTCGAGA
CGGGGAAACACAACCATCACCGCCGAGGCTACCGCTGGCCGAACGACTTC
GGTTGAGGAGATTGGGTAGCTGTCACGGGTAG
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Coding sequence (CDS) from alignment at C-linearis_contig97:206945..210276-

>mRNA_C-linearis_contig97.17074.1 ID=mRNA_C-linearis_contig97.17074.1|Name=mRNA_C-linearis_contig97.17074.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2352bp|location=Sequence derived from alignment at C-linearis_contig97:206945..210276- (Chordaria linearis ClinC8C monoicous)
ATGCTGTTAGCGTCAACAAGAATGGAAGACGGAGATGCAGCCTTATCCAC
GTCCACTGCAACAATCCACAAAGCCCCGAAAGGGCACAGCACGCGCAAGA
AAGGGCCCGAGGCGCGCAAGAAGTTCTTTCACTGCTACCTGCTGCAGTCA
CAAGACCCCAAGCACAAGCGTTCGACGTATATTGGCTTCACCGTAGATCC
CAGCCGAAGAATACGGCAACACAAATGCTGTTAGCGTCAACAAGAATGGA
AGACGGAGATGCAGCCTTATCCACGTCCACTGCAACAATCCACAAAGCCC
CGAAAGGGCACAGCACGCGCAAGAAAGGGCCCGAGGCGCGCAAGAAGTTC
TTTCACTGCTACCTGCTGCAGTCACAAGACCCCAAGCACAAGCGTTCGAC
GTATATTGGCTTCACCGTAGATCCCAGCCGAAGAATACGGCAACACAACG
GAGGCATCAATGGCGGCGCATACCGGCGGAGGCATCAATGGCGGCGCATA
CCGGACAAAGCGCAAACGCCCTTGGGATATGGTGGCCATAGTGCACGGTT
TCCCTTCAAAATCGTCCGCGCTGCAGTTCGAGACGGCCTGGCAGCACCCC
CAACGAGACCGCCGCATTAAGGTCAAAGTTAGAGATTTGCCGGTGGACTC
ACGTCGAACGGTCGGGGTACCGAGCAAGCTCCGCCTCTGCAAGGCCATGC
TGTGCCTCGACCCTTGGGCAAGACAAAGCGCAAACGCCCTTGGGATATGG
TGGCCATAGTGCACGGTTTCCCTTCAAAATCGTCCGCGCTGCAGTTCGAG
ACGGCCTGGCAGCACCCCCAACGAGACCGCCGCATTAAGGTCAAAGTTAG
AGATTTGCCGGTGGACTCACGTCGAACGGTCGGGGTACCGAGCAAGCTCC
GCCTCTGCAAGGCCATGCTGTGCCTCGACCCTTGGGCAAGGTACGGCCTG
GGCATCCGCTTCTTGCGAGAGGAGTACGCGACATGCTACGCCAAGCTGCA
CCTGCCCTTGCCCCTCCCGGTCGACGGCGACCCCGACACCGAACTCAGCA
CGGGGGTTCAGCAGGGCCTACCTGTCTACACACCGCCCCCTGCTTCTCCA
GAGAACCGACTCGAGGCATACAGGTGCGCCCTTTGCGTACGGCCTGGGCA
TCCGCTTCTTGCGAGAGGAGTACGCGACATGCTACGCCAAGCTGCACCTG
CCCTTGCCCCTCCCGGTCGACGGCGACCCCGACACCGAACTCAGCACGGG
GGTTCAGCAGGGCCTACCTGTCTACACACCGCCCCCTGCTTCTCCAGAGA
ACCGACTCGAGGCATACAGGTGCGCCCTTTGCGGTGGAAGTAGCGGTGTG
ACGGTCGACGGCGGGCCTCTCGTGTGGCGAGTAGACGATAGCAGCGACGA
TGAGGACGACGAATATGGCGGTCGCGGCGGTGCTGACGAGTCGGGGTGTG
ACAGCGAACAAGCCGCCCGGGAAGATGGTGGAGGTTGGAGCGGCGGTTCG
GCTTCGAGAAACAACGGGGAAACTCAGGAGGGGGAGGAGGGGGAAAGTGA
GGACGATGACTTCTTGAAGCTGAGTGGATGCTCTCAAGGCAGCCGAGCAG
GCGGCCGGATTGCGCAGACGAGGCGTGTTCCGGCATCCGGGGGGCGGTCA
GGAAGGGAATGTAGACCGTCTCCATCGCCCGCCGGTGGAAGTAGCGGTGT
GACGGTCGACGGCGGGCCTCTCGTGTGGCGAGTAGACGATAGCAGCGACG
ATGAGGACGACGAATATGGCGGTCGCGGCGGTGCTGACGAGTCGGGGTGT
GACAGCGAACAAGCCGCCCGGGAAGATGGTGGAGGTTGGAGCGGCGGTTC
GGCTTCGAGAAACAACGGGGAAACTCAGGAGGGGGAGGAGGGGGAAAGTG
AGGACGATGACTTCTTGAAGCTGAGTGGATGCTCTCAAGGCAGCCGAGCA
GGCGGCCGGATTGCGCAGACGAGGCGTGTTCCGGCATCCGGGGGGCGGTC
AGGAAGGGAATGTAGACCGTCTCCATCGCCCGCCGGCGGGCAAGACTCGG
TGGTACTCGTCGACACCACCAGCGATCGGCACGACAGCGAGAATAATAGT
GAGGTTCGAGACGGGGAAACACAACCATCACCGCCGAGGCTACCGCTGGC
CGAACGACTTCGGTTGAGGAGATTGGGTAGCTGTCACGGGTAGGGCGGGC
AAGACTCGGTGGTACTCGTCGACACCACCAGCGATCGGCACGACAGCGAG
AATAATAGTGAGGTTCGAGACGGGGAAACACAACCATCACCGCCGAGGCT
ACCGCTGGCCGAACGACTTCGGTTGAGGAGATTGGGTAGCTGTCACGGGT
AG
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