mRNA_C-linearis_contig97.17073.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig97.17073.1
Unique NamemRNA_C-linearis_contig97.17073.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig97.17073.1 vs. uniprot
Match: D8LKZ7_ECTSI (Methionyl-tRNA formyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKZ7_ECTSI)

HSP 1 Score: 594 bits (1531), Expect = 3.580e-208
Identity = 327/445 (73.48%), Postives = 354/445 (79.55%), Query Frame = 3
Query:   42 MGCTRLAPRLELGLGTFTGICALGMRGVCAFVP--------------HSSRFASVPSFTTRSTRIHDVSATWTQHQRTRCYAAATTMSTDSDG--RKKVVFLGTPDIAASSLELLIEASRQGKGGGFDVVRAVSNPPARTGRKKVLQPSPVQALAERKSIPVMTPATARDEEFLAELEGLEPDLCITAAYGQFLPRRFLDIPKYGTLNVHPSLLPLYRGASPVQRCLEAGDTKTGVTVAFTVLKMDAGPVVRQTVRELDGSEKAPELLQELFLEGTGQLIDCLPGVWDNTVKKTPQDDAAAVKAAKVSVQEARCCFKTTSAATIHNKVRAFAGWPGTWAMFSWGKDGSEASEPRKVKLITTAV------GDATEGGG----APARRQVVLRGNALELTCADGSVLKVLELQPLNKNVMSAKAFANGLRGEELSWVELEPLEEAVP 1298
            MGC R        LG  TGI ALGMR   AFVP              H +R A VP+ T RS                   +A TT S D+    RKKVVFLGTP+IAASSL LL+EASRQGKGGGFDVVRAVSNPPARTGRKKVLQPS VQALA+ + I VMTP TARDEEFLA LE L+PDLCITAAYGQFLPRRFLDIPK+GTLNVHPSLLPLYRGASPVQRCLEAGDT+TGVTVAFTVLKMDAGPVVRQTVRELDGSEKAPELLQELFLEGT QLI+CLPGVWDNTV+K+PQDDAAAVKAAK+SV EARCCFKTTSA TIHNKVRAFAGWPGTWAMFSWGK+G++ SE RKVKLITTAV      GD  +GG     A A RQVV++G+ALELTC+DGSVL+VLELQPLNK VMSAKAFANGLRG+E+ WVELEPL +AVP
Sbjct:   31 MGCKR-------PLGAITGIYALGMRCSLAFVPSTAPHALRLASNGLHRARGAVVPTSTRRSLG-----------------SAKTTTSMDTANVERKKVVFLGTPEIAASSLGLLLEASRQGKGGGFDVVRAVSNPPARTGRKKVLQPSAVQALADSEGITVMTPGTARDEEFLAGLEELQPDLCITAAYGQFLPRRFLDIPKFGTLNVHPSLLPLYRGASPVQRCLEAGDTETGVTVAFTVLKMDAGPVVRQTVRELDGSEKAPELLQELFLEGTKQLIECLPGVWDNTVEKSPQDDAAAVKAAKISVDEARCCFKTTSATTIHNKVRAFAGWPGTWAMFSWGKEGTD-SEARKVKLITTAVADPAAAGDDADGGTIEETAVAERQVVMKGDALELTCSDGSVLRVLELQPLNKKVMSAKAFANGLRGDEMRWVELEPLADAVP 450          
BLAST of mRNA_C-linearis_contig97.17073.1 vs. uniprot
Match: A0A835YXF4_9STRA (Methionyl-tRNA formyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXF4_9STRA)

HSP 1 Score: 397 bits (1020), Expect = 3.360e-132
Identity = 202/333 (60.66%), Postives = 239/333 (71.77%), Query Frame = 3
Query:  279 RKKVVFLGTPDIAASSLELLIEASRQGKGGGFDVVRAVSNPPARTGRKKVLQPSPVQALAERKSIPVMTPATARDEEFLAELEGLEPDLCITAAYGQFLPRRFLDIPKYGTLNVHPSLLPLYRGASPVQRCLEAGDTKTGVTVAFTVLKMDAGPVVRQTVRELDGSEKAPELLQELFLEGTGQLIDCLPGVWDNTVKKTPQDDAAAVKAAKVSVQEARCCFKTTSAATIHNKVRAFAGWPGTWAMFSWGKDGSEASEPRKVKLITTAVGDATEGGGAPARRQVVLRGNALELTCADGSVLKVLELQPLNKNVMSAKAFANGLRGEELSWVELE 1277
            RKKVVFLGTPD+AA SL LL+EAS +G+GGGFD+   V+ PPARTGR K + PS V  LA++  +PVM P  ARD EFL  L  L PDLCITAAYGQFLP++FLDIP++GTLN+HPSLLP YRGASPVQRCL+AGD  TGVT+ FT LKMD+GPV+RQ  R L G EKAP LL+ELF +G   L+  LP VWD + +   QDDA A +A K+   EARC F    A  IHNKVRAFAGWPGTW   +WG          KVKL+TTAVG+    GG    R VVL G ALE+TC DGSVL+VLE+QP  K VM A++F NG RG  ++WV+ E
Sbjct:   10 RKKVVFLGTPDVAAHSLSLLLEASSKGEGGGFDISAVVTQPPARTGRGKKVLPSAVHQLADQHGLPVMVPERARDPEFLEALRELGPDLCITAAYGQFLPQKFLDIPRHGTLNIHPSLLPKYRGASPVQRCLQAGDAVTGVTILFTELKMDSGPVLRQRSRALRGDEKAPALLRELFADGAAALVGALPEVWDGSAQPVAQDDAQATEAPKLDAAEARCDFAKEGARAIHNKVRAFAGWPGTWVRLAWG------GRATKVKLVTTAVGEGAGRGG----RGVVLAGGALEVTCRDGSVLRVLEVQPEGKRVMDARSFVNGARGAAVTWVDEE 332          
BLAST of mRNA_C-linearis_contig97.17073.1 vs. uniprot
Match: W7T6E6_9STRA (Methionyl-tRNA formyltransferase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T6E6_9STRA)

HSP 1 Score: 365 bits (938), Expect = 7.300e-119
Identity = 190/339 (56.05%), Postives = 236/339 (69.62%), Query Frame = 3
Query:  261 STDSDGRKKVVFLGTPDIAASSLELLIEASRQGKGGGFDVVRAVSNPPARTGRKKVLQPSPVQALAERKSIPVMTPATARDEEFLAELEGLEPDLCITAAYGQFLPRRFLDIPKYGTLNVHPSLLPLYRGASPVQRCLEAGDTKTGVTVAFTVLKMDAGPVVRQTVRELDGSEKAPELLQELFLEGTGQLIDCLPGVWDNTVKKTPQDDAAAVKAAKVSVQEARCCFKTTSAATIHNKVRAFAGWPGTWAMFSWGKDGSEASEPRKV--KLITTAVGDATEGGGAPARRQVVLRGN--ALELTCADGSVLKVLELQPLNKNVMSAKAFANGLRGEELSW 1265
            S+ S G K+VVFLGTPD+AA +L  L+ AS+ G+GGGF++V  V+ PPA +GRK  L PSPVQ LAE + +PV+ P  A+D  FL+ LE L PDLCITAAYG FLP +FL IP+YGTLN+HPSLLP YRGASPVQR L+AGD  TGV+V FT LKMDAGP++ Q    L G EKAPELLQ LF  GT  L++ LP VWD T +   Q +  A +A K+  +EA+ CF+  SA  +HNKVRAFAGWPGTWA+F   ++G +    + V  K++TT VG+  EG GA  R   VL G    L + C DGSVL +LE+QP  K VM  K++ANGLRG  L W
Sbjct:   74 SSKSAGTKRVVFLGTPDVAALTLSRLLAASKDGRGGGFEIVSVVTQPPAPSGRKLKLTPSPVQTLAESEKVPVLCPDKAKDPIFLSALETLAPDLCITAAYGNFLPSKFLAIPRYGTLNIHPSLLPKYRGASPVQRTLQAGDAVTGVSVLFTELKMDAGPLLAQVPYPLRGEEKAPELLQTLFTAGTEALLEALPSVWDGTARLVEQQEEQASQAEKIRAEEAQICFERESALRVHNKVRAFAGWPGTWAVFEVAEEGEKEGGGKAVRLKIVTTRVGEGEEGVGA-GRVVGVLGGKKGGLRVRCGDGSVLDILEVQPPGKKVMDCKSYANGLRGRTLRW 411          
BLAST of mRNA_C-linearis_contig97.17073.1 vs. uniprot
Match: A0A7S1XQ41_9STRA (Methionyl-tRNA formyltransferase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XQ41_9STRA)

HSP 1 Score: 356 bits (914), Expect = 1.790e-116
Identity = 188/340 (55.29%), Postives = 235/340 (69.12%), Query Frame = 3
Query:  276 GRKKVVFLGTPDIAASSLELLIEASRQGKGGG-FDVVRAVSNPPARTGRKKVLQPSPVQALAERKSIPVMTPATARDEEFLAELEGLEPDLCITAAYGQFLPRRFLDIPKYGTLNVHPSLLPLYRGASPVQRCLEAGDTKTGVTVAFTVLKMDAGPVVRQTVRELDGSEKAPELLQELFLEGTGQLIDCLPGVWDNTVKKTPQDDAAAVKAAKVSVQEARCCFKTTSAATIHNKVRAFAGWPGTWAMFSWGKDGSEASEPRKVKLITTAVGDATEGGGAPARRQVVLRGNALELTCADGSVLKVLELQPLNKNVMSAKAFANGLRGEELSWVELEPLEEA 1292
            G KKVVFLGTPD+AA SLE+L++ S +G   G +++V  V+NPPAR GR K +  SPV  LAE + +  +TPA+A+D EFL ELE +  DLCITAAYGQ+LP+RFL  PK+GTLNVHPSLLP +RGASPVQR LEAGD  TGV+V FTV KMDAGP++ Q  R L G E+APELL ELF EGT  L+D L GV+D + +   QD+AA   A K+S  +ARC   + +AATIH++ R FAGWPGTW M S      E  EP+K K   T +G   EG GA   R+V L G A  +TCADGSVL + ++QP  K +M AKA+ NG+RG ++ WV     E A
Sbjct:    3 GAKKVVFLGTPDVAARSLEILLDRSAEGAAAGLYEIVGVVTNPPARKGRGKKIVASPVGTLAEERGLKCLTPASAKDAEFLDELEAMGVDLCITAAYGQYLPKRFLATPKFGTLNVHPSLLPRWRGASPVQRSLEAGDETTGVSVLFTVTKMDAGPILAQADRTLGGDERAPELLMELFEEGTNLLVDNLAGVFDGSAEPWEQDEAAVTAADKISSDDARCDPASEAAATIHHRARGFAGWPGTWVMLS-----IEGGEPQKFKFSHTRLG---EGAGAADSREVTLEGKAARITCADGSVLDIEKIQPPTKKMMDAKAWWNGVRGRKVEWVPAPAPEPA 334          
BLAST of mRNA_C-linearis_contig97.17073.1 vs. uniprot
Match: A0A7S0L2B0_9EUKA (Methionyl-tRNA formyltransferase n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L2B0_9EUKA)

HSP 1 Score: 357 bits (915), Expect = 4.990e-116
Identity = 208/390 (53.33%), Postives = 249/390 (63.85%), Query Frame = 3
Query:  117 RGVCAFVPHSSRFASVPSFTTRSTRIHDVSATWTQHQ---RTRCYAAATTMSTDSDGRKKVVFLGTPDIAASSLELLIEASRQGKGGGFDVVRAVSNPPARTGRKKVLQPSPVQALAERKSIPVMTPATARDEEFLAELEGLEPDLCITAAYGQFLPRRFLDIPKYGTLNVHPSLLPLYRGASPVQRCLEAGDTKTGVTVAFTVLKMDAGPVVRQTVRELDGSEKAPELLQELFLEGTGQLIDCLPGVWDNTVKKT--PQDDAAAVKAAKVSVQEARCCFKTTSAATIHNKVRAFAGWPGTWAMFSWGKDGSEASEPRKVKLITTAVGDATEGGGAPARRQVVLRGNA-LELTCADGSVLKVLELQPLNKNVMSAKAFANGLRGEELSWV 1268
            RGVC     +S   +  S  + ++R     AT    +   R  C AAA         RKKVVFLGTP +AA SLELL+EASR G+GGGFDV   VS P ARTGRKK+L PSPV A+AE + + V+ P  A++  FLAE+E + PDLCITAAYG FLPRRFL+I K GTLN+HPSLLPLYRGA+P+QRCLEAGD   GV+V FTVLKMDAGP++RQ  R L   E+APELL ELF  GT  L+D LP VWD T K+    QD A A  AAKVSV+EA   F    AA  HN+VRAF+ WPGTW   S G     ++EP + KL+ T V D    G   AR + +   N  L + CADGSVL+VL L    K  + A AF NGL G  + WV
Sbjct:    4 RGVCVLACLASALPTAGSLLSPTSRAFAARATPFSRRCAPRALCSAAA--------DRKKVVFLGTPSVAARSLELLLEASRAGRGGGFDVAAVVSQPDARTGRKKLLTPSPVSAMAEAQGVRVLKPPNAKEVGFLAEIEEIAPDLCITAAYGCFLPRRFLEIGKCGTLNIHPSLLPLYRGAAPLQRCLEAGDEVGGVSVLFTVLKMDAGPILRQVRRPLATEEQAPELLLELFETGTELLVDALPSVWDGTYKEVLEEQDGALATSAAKVSVEEAALDFSVIGAAAAHNRVRAFSPWPGTWTAISIG-----SAEPVRAKLLQTRVID----GLLEARTRSLAHSNGGLRIVCADGSVLEVLRLTMPGKKPVGASAFWNGLNGRSVEWV 376          
BLAST of mRNA_C-linearis_contig97.17073.1 vs. uniprot
Match: A0A6S9KXU3_HETAK (Methionyl-tRNA formyltransferase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9KXU3_HETAK)

HSP 1 Score: 356 bits (913), Expect = 1.390e-115
Identity = 184/336 (54.76%), Postives = 231/336 (68.75%), Query Frame = 3
Query:  258 MSTDSDGRKKVVFLGTPDIAASSLELLIEASRQGKGGGFDVVRAVSNPPARTGRKKVLQPSPVQALAERKSIPVMTPATARDEEFLAELEGLEPDLCITAAYGQFLPRRFLDIPKYGTLNVHPSLLPLYRGASPVQRCLEAGDTKTGVTVAFTVLKMDAGPVVRQTVRELDGSEKAPELLQELFLEGTGQLIDCLPGVWDNTVKKTPQDDAAAVKAAKVSVQEARCCFKTTSAATIHNKVRAFAGWPGTWAMFSWGKDGSEASEPRKVKLITTAVGDATEGGGAPARRQVVLRGNALELTCADGSVLKVLELQPLNKNVMSAKAFANGLRGEELSW 1265
            M + S  RKKV+FLGTPD+AA +L  L++AS +G+GGGFD+   V+ PPA  GRKK L PSPVQ LAE K + V+TP  A+D+ F+  L  + PDLCITAAYGQFLP +FL+IPK+GTLN+HPSLLP +RGASPVQR LEAGD  TGV+V FTVLKMDAGP+ +       G E+AP LL+ LF  GT  L++ LP VWD T+K T QD+A AV A K+S  +    F    AA  HN+ R FAGWPG  + F  G    E+ EP  +K++TT +  A E G +   ++V L+GN LE+ C DGSVL V ELQP NK  M+ KA+ NGLRGE + W
Sbjct:   49 MMSSSTDRKKVIFLGTPDVAAQTLNRLLKASEEGRGGGFDISAVVTQPPAPAGRKKKLTPSPVQVLAEEKGLIVLTPEKAKDDNFIETLTQIGPDLCITAAYGQFLPTKFLNIPKFGTLNIHPSLLPRWRGASPVQRALEAGDAVTGVSVLFTVLKMDAGPIAKSIEYTCTGDEQAPWLLEHLFGLGTDGLVEVLPAVWDGTIKTTEQDEATAVAADKISKADGLLDFGAMGAAECHNRGRGFAGWPGVQSTFLIG----ESDEPTSIKILTTKL-VAKESGSSEPTQEVKLKGNLLEVICGDGSVLGVTELQPPNKKGMAVKAWWNGLRGERVRW 379          
BLAST of mRNA_C-linearis_contig97.17073.1 vs. uniprot
Match: R1CZB6_EMIHU (Methionyl-tRNA formyltransferase n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CZB6_EMIHU)

HSP 1 Score: 357 bits (916), Expect = 1.750e-115
Identity = 198/364 (54.40%), Postives = 240/364 (65.93%), Query Frame = 3
Query:  264 TDSDGRKKVVFLGTPDIAASSLELLIEASRQGKGGGFDVVRAVSNPPARTGRKKVLQPSPVQALAERKSIPVMTPATARDEEFLAELEGLEPDLCITAAYGQFLPRRFLDIPKYGTLNVHPSLLPLYRGASPVQRCLEAGDTKTGVTVAFTVLKMDAGPVVRQTVRELDGSEKAPELLQELFLEGTGQL------IDCLPGVWDNTV--KKTPQDDAAAVKAAKVSVQEARCCFKTTSAATIHNKVRAFAGWPGTWAMFSWGKDGSEASEPRKVKLITTAVGDAT---------EGGGAPARRQVVLR--GNALELTCADGSVLKVLELQPLNKNVMSAKAFANGLRGEELSWVELEPLEEAVP 1298
            T S  +++VVFLGTP +AA SLELL++AS QG GGGF+V   VS PPAR+GRK  L  SPVQ LAE + I ++TPA+A++E FLA L+ L+PDLCITAAYG FLP+RFLDIP++GTLNVHPSLLPLYRGA+P+QRCLEAGD   GV+VAFTVLKMDAGP++RQ  R L G E+ P LL ELF  GT  L      +D LP VWD +   +  PQ+DA A KAAK+S  +A    +  SA+  HNKVRAFAGWPGTW   S G      +EP +VKL+ T +G A          +    P  RQV L   G AL L C DGS+L+VL L    K  + A+AF NGL G    W    P   A P
Sbjct:   31 TMSAAKRRVVFLGTPAVAARSLELLLDASAQGGGGGFEVAAVVSQPPARSGRKMKLTASPVQTLAEARGIELLTPASAKEEAFLARLDELQPDLCITAAYGCFLPQRFLDIPRFGTLNVHPSLLPLYRGAAPLQRCLEAGDAVAGVSVAFTVLKMDAGPLLRQEERPLVGDEQEPPLLLELFERGTEPLEAEDLLLDALPSVWDGSCAGQLAPQEDARATKAAKLSTADAELRLEQLSASEAHNKVRAFAGWPGTWTRISIG-----GAEPIRVKLLQTRLGAAARSRHLSPPLQSSSRPTGRQVALAAGGGALRLVCGDGSLLEVLRLTLPGKKPVDARAFWNGLNGRRAEWASAPPDAAAAP 389          
BLAST of mRNA_C-linearis_contig97.17073.1 vs. uniprot
Match: A0A7S2Y3A0_9STRA (Methionyl-tRNA formyltransferase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y3A0_9STRA)

HSP 1 Score: 342 bits (878), Expect = 8.640e-110
Identity = 187/360 (51.94%), Postives = 234/360 (65.00%), Query Frame = 3
Query:  210 TWTQHQRTRCYAAATTMSTDSDGR--KKVVFLGTPDIAASSLELLIEASRQGKGGGFDVVRAVSNPPARTGRKKVLQPSPVQALAERKSIPVMTPATARDEEFLAEL-EGLEPDLCITAAYGQFLPRRFLDIPKYGTLNVHPSLLPLYRGASPVQRCLEAGDTKTGVTVAFTVLKMDAGPVVRQTVRELDGSEKAPELLQELFLEGTGQLIDCLPGVWDNTVKKTPQDDAAAVKAAKVSVQEARCCFKTTSAATIHNKVRAFAGWPGTWAMFSWGKDGSEASEPRKVKL-ITTAVGDATEGGGAPARRQVVLRGNALELTCADGSVLKVLELQPLNKNVMSAKAFANGLRGEELSWVELE 1277
            T T H  T  YA        ++G   K+VVFLGTP +AA SLELL++AS+ G+GGGF+V   V+ PPAR+GRKK L PSPV  LAE + IPV+TP  A+DE+FL  L E + PDLCITAAYGQFLP +FL+IPK+GTLN+HPSLLPLYRGASPVQR L+ G  +TGV+V FTVLKMDAGP+VRQ    LDG E+ P+LL  LF  GT +L+D LP VW       PQD+  A KA K+   E    F+   A   HNKVR FAGWPGTWA FS G       +P  +K+  +  +  AT    + +    + +   +E+ C DGS+  + E+Q  NKN   +K F NGLRGEE+SW   E
Sbjct:   69 THTFHSSTSQYATGEDHGEATEGSDPKRVVFLGTPPVAARSLELLLDASKSGRGGGFEVSAVVTQPPARSGRKKRLTPSPVHQLAEAQGIPVLTPEKAKDEDFLQALREDINPDLCITAAYGQFLPTKFLNIPKFGTLNIHPSLLPLYRGASPVQRSLQDGVAETGVSVLFTVLKMDAGPIVRQPRITLDGDEQTPDLLLRLFELGTKELVDALPSVWSGECIPIPQDETLATKADKIDKSEGLLDFRE-GAEVCHNKVRGFAGWPGTWAPFSIG-----GKDPVNLKIKASKIISRATNQPSSLSNNASLNKDGVIEVQCDDGSIFGICEIQAPNKNSQPSKVFWNGLRGEEMSWATEE 422          
BLAST of mRNA_C-linearis_contig97.17073.1 vs. uniprot
Match: A0A0G4EPG3_VITBC (Methionyl-tRNA formyltransferase n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EPG3_VITBC)

HSP 1 Score: 329 bits (843), Expect = 8.180e-105
Identity = 178/371 (47.98%), Postives = 237/371 (63.88%), Query Frame = 3
Query:  207 ATWTQHQRTRCYAAATTMSTDSDGRKKVVFLGTPDIAASSLELLIEASRQGKGGGFDVVRAVSNPPARTGRKKVLQPSPVQALAERKSIPVMTPATARDEEFLAELEGLEPDLCITAAYGQFLPRRFLDIPKYGTLNVHPSLLPLYRGASPVQRCLEAGDTKTGVTVAFTVLKMDAGPVVRQTVRELDGSEKAPELLQELFLEGTGQLIDCLPGVWDNTVKKTPQDDAAAVKAAKVSVQEARCCFKTTSAATIHNKVRAFAGWPGTWAMFSWGKDGSEASEPR-----KVKLITTAV-----GDATEGGGAPAR----RQVVLRGNALELTCADGSVLKVLELQPLNKNVMSAKAFANGLRGEELSWVELE 1277
            A  T   R    A+A+T   +   R+KVVFLGTPD+AA  L+ + +A+++    GFD++  V+NPPA  GRK+ + PSPVQA AE   +PV  P    DE FL E+E L PDLCITAAYG FLP+RFLDIP+YGTLN+HPSLLP YRGA+PVQR LEAG+  TGV+V  TVLKMDAGPV++Q    L G E  P+LL  LF  GT  L+D LP VW       PQD++ A KA K++  E    F   +AA+ HNK+RAF+GWPG W+ F+      + + P+     K+KL+++ +       A++G  + A     R + L+G+AL++ C DGS L + +LQP ++  M AKAF NGLRG  + WV  E
Sbjct:   37 AAGTARSRVSSLASASTEGAEGVVRRKVVFLGTPDVAALCLQRIHKAAQEDSS-GFDLMGVVTNPPAPVGRKRTVVPSPVQAYAEENGLPVWAPDKPSDEAFLNEMEALSPDLCITAAYGGFLPQRFLDIPEYGTLNIHPSLLPKYRGAAPVQRALEAGEAVTGVSVVRTVLKMDAGPVLKQIEYPLTGDETCPQLLHTLFELGTDALLDLLPSVWRREAPAQPQDESLATKARKLTADEGELRFNRETAASAHNKIRAFSGWPGCWSEFTLTSGSDDDAPPQDTETLKMKLLSSRLLRGGPSSASDGNASSAPPSADRLIDLQGDALKIVCFDGSELGITQLQPQSRKAMGAKAFWNGLRGRLVRWVGAE 406          
BLAST of mRNA_C-linearis_contig97.17073.1 vs. uniprot
Match: A0A8J5X4E8_DIALT (Methionyl-tRNA formyltransferase n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5X4E8_DIALT)

HSP 1 Score: 314 bits (804), Expect = 3.930e-99
Identity = 178/333 (53.45%), Postives = 215/333 (64.56%), Query Frame = 3
Query:  282 KKVVFLGTPDIAASSLELLIEASR-QGKGGGFDVVRAVSNPPARTGRKKVLQPSPVQALAERKSIPVMTPATARDEEFLAELEGLEPDLCITAAYGQFLPRRFLDIPKYGTLNVHPSLLPLYRGASPVQRCLEAGDTKTGVTVAFTVLKMDAGPVVRQTVRELDGSEKAPELLQELFLEGTGQLIDCLPGVWDN--TVKKTPQDDAAAVKAAKVSVQEARCCFKTTSAATIHNKVRAFAGWPGTWAMFSWGKDGSEASEPRKVKLITTAVGDATEGGGAPARRQVVLRGNALELTCADGSVLKVLELQPLNKNVMSAKAFANGLRG-EELSWV 1268
            ++VVFLGTP +AA SLE+L++A+R       F+VV  VS PPA  GRKKVL  SPV ALA+ + + V+TP +ARD  FL ELE +  DLC+TAAYG FLP RFL IP  GTLN+HPSLLP +RGA+PVQR LEAGD  TGVTV FTVLKMDAGP+VRQ    L G E+ PELL+ LF  G  +L+DCLP VW      +   QD+ AA  A K+S  EA   F   SA  +HN VRAFA WPGT    S G       EP  VKL  T +  +    GA   R + L G AL   CADGSVL + ELQ   +  + A+AF NGL+G +ELSW+
Sbjct:   68 RRVVFLGTPAVAAHSLEMLLDAARPHAPDSTFEVVAVVSQPPAPAGRKKVLTNSPVHALADARGVRVLTPKSARDGAFLDELEAMGIDLCVTAAYGCFLPARFLAIPSCGTLNIHPSLLPRWRGAAPVQRTLEAGDAVTGVTVLFTVLKMDAGPIVRQRTLPLRGDEQCPELLRNLFEIGCHELLDCLPDVWSGEAAARARAQDEGAATTAPKLSKDEALGSFAAQSATQLHNAVRAFAEWPGTLVSLSVG------GEPTDVKLCRTRLPASDAAAGAARTRALTLDGAALVAVCADGSVLHIEELQVAGRRRVDARAFWNGLQGKDELSWL 394          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig97.17073.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKZ7_ECTSI3.580e-20873.48Methionyl-tRNA formyltransferase n=2 Tax=Ectocarpu... [more]
A0A835YXF4_9STRA3.360e-13260.66Methionyl-tRNA formyltransferase n=1 Tax=Tribonema... [more]
W7T6E6_9STRA7.300e-11956.05Methionyl-tRNA formyltransferase n=2 Tax=Monodopsi... [more]
A0A7S1XQ41_9STRA1.790e-11655.29Methionyl-tRNA formyltransferase n=1 Tax=Phaeomona... [more]
A0A7S0L2B0_9EUKA4.990e-11653.33Methionyl-tRNA formyltransferase n=1 Tax=Coccolith... [more]
A0A6S9KXU3_HETAK1.390e-11554.76Methionyl-tRNA formyltransferase n=1 Tax=Heterosig... [more]
R1CZB6_EMIHU1.750e-11554.40Methionyl-tRNA formyltransferase n=1 Tax=Emiliania... [more]
A0A7S2Y3A0_9STRA8.640e-11051.94Methionyl-tRNA formyltransferase n=1 Tax=Fibrocaps... [more]
A0A0G4EPG3_VITBC8.180e-10547.98Methionyl-tRNA formyltransferase n=2 Tax=Vitrella ... [more]
A0A8J5X4E8_DIALT3.930e-9953.45Methionyl-tRNA formyltransferase n=2 Tax=Diacronem... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig97contigC-linearis_contig97:203935..206905 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score600.1
Seed ortholog evalue7.8e-169
Seed eggNOG ortholog2880.D8LKZ7
Preferred nameMTF1
KEGG rclassRC00026,RC00165
KEGG koko:K00604
KEGG ReactionR03940
KEGG Pathwayko00670,ko00970,map00670,map00970
Hectar predicted targeting categorychloroplast
EggNOG free text desc.methionyl-tRNA formyltransferase activity
EggNOG OGsCOG0223@1,KOG3082@2759
Ec32 ortholog descriptionmethionyl-tRNA formyltransferase
Ec32 orthologEc-11_006140.1
EC2.1.2.9
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons4
Model size1591
Cds size1263
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig97.17073.1prot_C-linearis_contig97.17073.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig97 203976..206618 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930830.6861792-UTR-C-linearis_contig97:203934..2039751622930830.6861792-UTR-C-linearis_contig97:203934..203975Chordaria linearis ClinC8C monoicousUTRC-linearis_contig97 203935..203975 +
1690881271.882012-UTR-C-linearis_contig97:203934..2039751690881271.882012-UTR-C-linearis_contig97:203934..203975Chordaria linearis ClinC8C monoicousUTRC-linearis_contig97 203935..203975 +
1622930830.837359-UTR-C-linearis_contig97:206618..2069051622930830.837359-UTR-C-linearis_contig97:206618..206905Chordaria linearis ClinC8C monoicousUTRC-linearis_contig97 206619..206905 +
1690881271.9501069-UTR-C-linearis_contig97:206618..2069051690881271.9501069-UTR-C-linearis_contig97:206618..206905Chordaria linearis ClinC8C monoicousUTRC-linearis_contig97 206619..206905 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930830.7020257-CDS-C-linearis_contig97:203975..2046891622930830.7020257-CDS-C-linearis_contig97:203975..204689Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 203976..204689 +
1690881271.9037466-CDS-C-linearis_contig97:203975..2046891690881271.9037466-CDS-C-linearis_contig97:203975..204689Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 203976..204689 +
1622930830.7205303-CDS-C-linearis_contig97:205326..2054391622930830.7205303-CDS-C-linearis_contig97:205326..205439Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 205327..205439 +
1690881271.91677-CDS-C-linearis_contig97:205326..2054391690881271.91677-CDS-C-linearis_contig97:205326..205439Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 205327..205439 +
1622930830.7821686-CDS-C-linearis_contig97:205775..2058801622930830.7821686-CDS-C-linearis_contig97:205775..205880Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 205776..205880 +
1690881271.9307141-CDS-C-linearis_contig97:205775..2058801690881271.9307141-CDS-C-linearis_contig97:205775..205880Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 205776..205880 +
1622930830.8146915-CDS-C-linearis_contig97:206287..2066181622930830.8146915-CDS-C-linearis_contig97:206287..206618Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 206288..206618 +
1690881271.9402761-CDS-C-linearis_contig97:206287..2066181690881271.9402761-CDS-C-linearis_contig97:206287..206618Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 206288..206618 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig97.17073.1

>prot_C-linearis_contig97.17073.1 ID=prot_C-linearis_contig97.17073.1|Name=mRNA_C-linearis_contig97.17073.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=421bp
MGCTRLAPRLELGLGTFTGICALGMRGVCAFVPHSSRFASVPSFTTRSTR
IHDVSATWTQHQRTRCYAAATTMSTDSDGRKKVVFLGTPDIAASSLELLI
EASRQGKGGGFDVVRAVSNPPARTGRKKVLQPSPVQALAERKSIPVMTPA
TARDEEFLAELEGLEPDLCITAAYGQFLPRRFLDIPKYGTLNVHPSLLPL
YRGASPVQRCLEAGDTKTGVTVAFTVLKMDAGPVVRQTVRELDGSEKAPE
LLQELFLEGTGQLIDCLPGVWDNTVKKTPQDDAAAVKAAKVSVQEARCCF
KTTSAATIHNKVRAFAGWPGTWAMFSWGKDGSEASEPRKVKLITTAVGDA
TEGGGAPARRQVVLRGNALELTCADGSVLKVLELQPLNKNVMSAKAFANG
LRGEELSWVELEPLEEAVPG*
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mRNA from alignment at C-linearis_contig97:203935..206905+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig97.17073.1 ID=mRNA_C-linearis_contig97.17073.1|Name=mRNA_C-linearis_contig97.17073.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2971bp|location=Sequence derived from alignment at C-linearis_contig97:203935..206905+ (Chordaria linearis ClinC8C monoicous)
GCTCCCATCAGCATTGATTGTTCCTGCCTCACGCAGCACCTATGGGTTGC ACGCGGTTAGCACCTAGGTTAGAATTGGGGTTGGGAACCTTCACAGGAAT CTGTGCTCTAGGCATGCGAGGAGTCTGCGCGTTTGTGCCTCATTCCTCGA GGTTTGCATCCGTCCCGTCCTTCACTACACGTAGCACTCGAATACATGAT GTTTCTGCAACATGGACACAGCACCAACGCACACGCTGCTACGCGGCGGC CACAACCATGAGCACCGACAGCGACGGGCGAAAGAAAGTGGTGTTCCTCG GCACGCCGGATATTGCAGCCTCGTCGCTGGAGCTGCTGATAGAGGCGTCT CGACAGGGCAAAGGCGGCGGATTTGACGTTGTCCGAGCAGTGTCCAACCC GCCGGCCCGCACGGGCCGCAAAAAAGTTCTGCAACCTTCTCCGGTCCAGG CTCTCGCGGAACGCAAGAGCATCCCGGTCATGACGCCGGCCACCGCCCGC GACGAAGAGTTTCTGGCTGAGCTGGAGGGGCTGGAGCCGGATCTGTGCAT CACCGCAGCCTACGGGCAGTTCCTGCCGCGACGGTTTCTGGATATCCCCA AGTACGGGACCTTGAACGTGCACCCCTCGCTGCTTCCGCTCTACCGGGGG GCATCGCCAGTTCAGCGATGCCTTGAGGCCGGAGATACCAAAACCGGAGT CACGGTGGCGTTTACGGTGCTCAAAATGGACGCGGGGCCTGTCGTCAGGC AGACGGTGAGAGACGTAGGGGAGCGCGGGGATGCCATCGTATATTGTACG TTCCGTGGATAGGTACGCGCGCGTTGCGTGCGGCTGTGTTGCGTGCAACG GCCGTGCTGATTGTGCCAGGTGATTTTGGAGCAGCATCGTCTTGGTGCAC TGGGGGAAAGGTCTAGTCTATATTCTGTTGTCGCGATTCTCACACAAGTC TGGCCCCAAGTAGCGTCGTAGTCTACAGTATCGCACACGAACTTGCCCAT CTACCTTCGACGGCATACTGCCGTTATTCGAGGCAGGTGTTGTCTTGGAA GTTGCTTGGTCAGAAGATAGGCAGATGTTGTGCAAAGCTCTGGATTAAGC TCTCAAGAGAGAAGTGAGAGGAGGGGCGCGTTTCGACGCTAACCCAACGC AGACTGGACTCATACACGTATACCCCAGGACAACGCAGTAACGAACGCGT GTGCCCCTAAAACCCGGTGAATGCAACAGATGTTGTGCCATGTAAGGGTT GGTAAATGCCAGCCGGGACCTCGAACGACCGAGGCTCGGGTCAAAATACC ACGCTGTGTAGCAGTATCGCCGTGCCATGCCACGGCCATTGAATGGCCGT TGCCCGTGCGCTTGCCGCTGTTGGTAATCTCGATGGCAACAGGTGCGCGA GCTGGACGGCTCGGAAAAGGCACCTGAGCTACTGCAAGAGCTGTTTTTGG AGGGCACTGGACAGCTCATCGACTGCCTACCCGGCGTGTGGGACAACACT GTGAAGTGAGCGCCCAGTTATAGTGTTCGATTAACCCGGGCGGTTCGGGC GTCGGTCGTCGCGTACTGCATTAGCATTCCAACGCAGGCATGCAGGGAGA GAGAGAGAGAGAGAGAGAGAGAATGAGACCTAGAAAGAGCCCTGAACCAG TTCGACCTATGGCGGTTGGTGACCGTCGAGTGGCGCCAAGGTTTTCCTGT GGTTTAATTCGCCCGACGAACATCGTTTTGGTTACTAGTAGATAGTAGAA GGAGGAGGTCCAGCTGTACGTACCTACCACGGTTGTTTCGTCGCAGATCG TTCATGTTCCACCCACCCCTGTTTTCCGCATTTTCTGTCAGGAAAACTCC TCAGGACGATGCTGCGGCCGTGAAAGCTGCCAAGGTTTCTGTCCAAGAGG CGCGGTGCTGTTTCAAGACCACCAGCGCAGCAACCATCCACAACAAGTGA GGCGAAGCACCACACCTGGCTCTGCGTCATGTTGATGCCCCCCTGCTTGT GTGCACATAGTAAACTACCTTGCGCACCAGCCGTCAGCGACAATGCTTTC CCTGTATCTACAAGTAGGATACGTTCTTCGAGGATTGTGAACACCAGATT CATGATGTCAGGCACATCTAGTTTGTTCCCTCGCCGCTTGTAGAGCTTTG TACGGACCGGTTACCTCCGTCAGCTCACCTCATACGCCAACACACCGTGA TAACGTGTTGGAGCTCGCAAAAATCGATACAAAGCATGAGGTGTAAGACT AGTTGAACGACGGCACCGAACGAGTGTAGATTACTCATCTACACCTTGAA CATGTTTGTTTTTTTGCCTCCCTTGATCCTACGGCACACGGACCGCCTCG CAGAGTGAGAGCATTCGCGGGCTGGCCGGGCACGTGGGCCATGTTCTCCT GGGGGAAAGACGGAAGCGAGGCTTCGGAACCGCGAAAAGTGAAGCTGATC ACCACTGCCGTGGGAGACGCAACAGAGGGGGGTGGGGCACCGGCTAGACG ACAAGTGGTGTTGAGGGGCAATGCGCTAGAGTTGACGTGTGCGGACGGCA GCGTGCTGAAGGTGCTGGAGCTACAGCCGTTGAATAAGAACGTCATGAGC GCAAAGGCGTTTGCGAATGGCCTGAGGGGGGAGGAACTTAGCTGGGTTGA GCTCGAGCCATTAGAGGAAGCCGTTCCAGGATGACCGCTGCTCGTGGTTA ACAAACATATGTACGTTGGTACAAGTTTTGCGTTGCGCGCTACGCATGGG TTGCAGCCTTGGTGGTGGCTGCAGCCTTGGTGGTGGCTGCAGCCCTGGTG GTTGCACCCTCGGTGGTTGCGCAACACCTGAACTAGCTTCTACCATGGTC GGTACGGCAAGCGTTAACTCCAAAGTGTGTTGGCCTTTTCAAAAGACGGG GAAACACAGGTTCACACGATCCGCGATCCTTCGGGGTTGTGACATGGCAC CCAACAACATAGCACATGACG
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Coding sequence (CDS) from alignment at C-linearis_contig97:203935..206905+

>mRNA_C-linearis_contig97.17073.1 ID=mRNA_C-linearis_contig97.17073.1|Name=mRNA_C-linearis_contig97.17073.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2526bp|location=Sequence derived from alignment at C-linearis_contig97:203935..206905+ (Chordaria linearis ClinC8C monoicous)
ATGGGTTGCACGCGGTTAGCACCTAGGTTAGAATTGGGGTTGGGAACCTT
CACAGGAATCTGTGCTCTAGGCATGCGAGGAGTCTGCGCGTTTGTGCCTC
ATTCCTCGAGGTTTGCATCCGTCCCGTCCTTCACTACACGTAGCACTCGA
ATACATGATGTTTCTGCAACATGGACACAGCACCAACGCACACGCTGCTA
CGCGGCGGCCACAACCATGAGCACCGACAGCGACGGGCGAAAGAAAGTGG
TGTTCCTCGGCACGCCGGATATTGCAGCCTCGTCGCTGGAGCTGCTGATA
GAGGCGTCTCGACAGGGCAAAGGCGGCGGATTTGACGTTGTCCGAGCAGT
GTCCAACCCGCCGGCCCGCACGGGCCGCAAAAAAGTTCTGCAACCTTCTC
CGGTCCAGGCTCTCGCGGAACGCAAGAGCATCCCGGTCATGACGCCGGCC
ACCGCCCGCGACGAAGAGTTTCTGGCTGAGCTGGAGGGGCTGGAGCCGGA
TCTGTGCATCACCGCAGCCTACGGGCAGTTCCTGCCGCGACGGTTTCTGG
ATATCCCCAAGTACGGGACCTTGAACGTGCACCCCTCGCTGCTTCCGCTC
TACCGGGGGGCATCGCCAGTTCAGCGATGCCTTGAGGCCGGAGATACCAA
AACCGGAGTCACGGTGGCGTTTACGGTGCTCAAAATGGACGCGGGGCCTG
TCGTCAGGCAGACGATGGGTTGCACGCGGTTAGCACCTAGGTTAGAATTG
GGGTTGGGAACCTTCACAGGAATCTGTGCTCTAGGCATGCGAGGAGTCTG
CGCGTTTGTGCCTCATTCCTCGAGGTTTGCATCCGTCCCGTCCTTCACTA
CACGTAGCACTCGAATACATGATGTTTCTGCAACATGGACACAGCACCAA
CGCACACGCTGCTACGCGGCGGCCACAACCATGAGCACCGACAGCGACGG
GCGAAAGAAAGTGGTGTTCCTCGGCACGCCGGATATTGCAGCCTCGTCGC
TGGAGCTGCTGATAGAGGCGTCTCGACAGGGCAAAGGCGGCGGATTTGAC
GTTGTCCGAGCAGTGTCCAACCCGCCGGCCCGCACGGGCCGCAAAAAAGT
TCTGCAACCTTCTCCGGTCCAGGCTCTCGCGGAACGCAAGAGCATCCCGG
TCATGACGCCGGCCACCGCCCGCGACGAAGAGTTTCTGGCTGAGCTGGAG
GGGCTGGAGCCGGATCTGTGCATCACCGCAGCCTACGGGCAGTTCCTGCC
GCGACGGTTTCTGGATATCCCCAAGTACGGGACCTTGAACGTGCACCCCT
CGCTGCTTCCGCTCTACCGGGGGGCATCGCCAGTTCAGCGATGCCTTGAG
GCCGGAGATACCAAAACCGGAGTCACGGTGGCGTTTACGGTGCTCAAAAT
GGACGCGGGGCCTGTCGTCAGGCAGACGGTGCGCGAGCTGGACGGCTCGG
AAAAGGCACCTGAGCTACTGCAAGAGCTGTTTTTGGAGGGCACTGGACAG
CTCATCGACTGCCTACCCGGCGTGTGGGACAACACTGTGAAGTGCGCGAG
CTGGACGGCTCGGAAAAGGCACCTGAGCTACTGCAAGAGCTGTTTTTGGA
GGGCACTGGACAGCTCATCGACTGCCTACCCGGCGTGTGGGACAACACTG
TGAAGAAAACTCCTCAGGACGATGCTGCGGCCGTGAAAGCTGCCAAGGTT
TCTGTCCAAGAGGCGCGGTGCTGTTTCAAGACCACCAGCGCAGCAACCAT
CCACAACAAGAAAACTCCTCAGGACGATGCTGCGGCCGTGAAAGCTGCCA
AGGTTTCTGTCCAAGAGGCGCGGTGCTGTTTCAAGACCACCAGCGCAGCA
ACCATCCACAACAAAGTGAGAGCATTCGCGGGCTGGCCGGGCACGTGGGC
CATGTTCTCCTGGGGGAAAGACGGAAGCGAGGCTTCGGAACCGCGAAAAG
TGAAGCTGATCACCACTGCCGTGGGAGACGCAACAGAGGGGGGTGGGGCA
CCGGCTAGACGACAAGTGGTGTTGAGGGGCAATGCGCTAGAGTTGACGTG
TGCGGACGGCAGCGTGCTGAAGGTGCTGGAGCTACAGCCGTTGAATAAGA
ACGTCATGAGCGCAAAGGCGTTTGCGAATGGCCTGAGGGGGGAGGAACTT
AGCTGGGTTGAGCTCGAGCCATTAGAGGAAGCCGTTCCAGGATGAAGTGA
GAGCATTCGCGGGCTGGCCGGGCACGTGGGCCATGTTCTCCTGGGGGAAA
GACGGAAGCGAGGCTTCGGAACCGCGAAAAGTGAAGCTGATCACCACTGC
CGTGGGAGACGCAACAGAGGGGGGTGGGGCACCGGCTAGACGACAAGTGG
TGTTGAGGGGCAATGCGCTAGAGTTGACGTGTGCGGACGGCAGCGTGCTG
AAGGTGCTGGAGCTACAGCCGTTGAATAAGAACGTCATGAGCGCAAAGGC
GTTTGCGAATGGCCTGAGGGGGGAGGAACTTAGCTGGGTTGAGCTCGAGC
CATTAGAGGAAGCCGTTCCAGGATGA
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